Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

37522127 .. 37523351

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG298200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTGCACTTGCTCTCACCCCAGATATCGAGTACCGGATTCGCGAGATCATGCAGGAGGCCATCAAATGCATGTGACACACAGACTGTTTTGACAACCGATGATGTGGATCGCGCGCTTAAATTAAGAAATGTGGAGCCAATATATGGCTTTGGTTCTGGAGATCCTTTGGGATTCAAGAGAGCTGCTGGACATAGGGATTTGTTCTGCATAGATGACAAGGATGTTGAATTTAAAGATGTGATTGAGGCACCTTTGCCAAAAGCACCATTTGATGTATCCGTTACTGCTCACTGGCTGGCAATCGAAGGTTTTCAACCTGCAATTCCAGAAAATGCTCCAGTGAAGCGCTTGCTGTATACTCTGATGTCCAAAAATCTGAATACAAGGAAGATGGACTTCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

135

Amino Acids

15.06

Weight (kDa)

6.82

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	250
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	3 cut(s)	44, 114, 116
AclWI	GGATC	2 cut(s)	117, 158
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	1 cut(s)	34
AfeI	AGCGCT	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	178, 230, 317
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
AlwI	GGATC	2 cut(s)	117, 158
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	3 cut(s)	116, 118, 351
AsuHPI	GGTGA	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	70, 388
BciVI	GTATCC	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	404
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	138, 252
BpmI	CTGGAG	2 cut(s)	180, 324
BsaBI	GATNNNNATC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	299, 341
Bse8I	GATNNNNATC	1 cut(s)	108
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	299, 341
BsePI	GCGCGC	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	3 cut(s)	44, 114, 116
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	47, 109, 163
Bsp68I	TCGCGA	1 cut(s)	44
BspANI	GGCC	1 cut(s)	61
BspFNI	CGCG	3 cut(s)	44, 114, 116
BspLI	GGNNCC	2 cut(s)	138, 252
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	117, 158
BspT107I	GGYRCC	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	299, 341
BssHII	GCGCGC	1 cut(s)	114
BssMI	GATC	3 cut(s)	47, 109, 163
BssNAI	GTATAC	1 cut(s)	360
Bst1107I	GTATAC	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	116, 300, 353
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	3 cut(s)	44, 114, 116
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	3 cut(s)	116, 118, 351
BstKTI	GATC	3 cut(s)	50, 112, 166
BstMBI	GATC	3 cut(s)	47, 109, 163
BstNSI	RCATGY	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	404
BstUI	CGCG	3 cut(s)	44, 114, 116
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BstZ17I	GTATAC	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	292, 348
BtuMI	TCGCGA	1 cut(s)	44
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	116, 300, 353
CfoI	GCGC	3 cut(s)	116, 118, 351
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	51, 72
CviJI	RGCY	5 cut(s)	61, 139, 150, 185, 298
CviKI_1	RGCY	5 cut(s)	61, 139, 150, 185, 298
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	3 cut(s)	49, 111, 165
DpnII	GATC	3 cut(s)	47, 109, 163
DraI	TTTAAA	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	27
Eco47III	AGCGCT	1 cut(s)	350
EcoRV	GATATC	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	2 cut(s)	54, 75
FaiI	YATR	7 cut(s)	52, 73, 145, 147, 195, 212, 360
FalI	AAGNNNNNCTT	1 cut(s)	383
FatI	CATG	2 cut(s)	50, 71
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	186
GlaI	GCGC	3 cut(s)	115, 117, 350
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	2 cut(s)	180, 324
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	3 cut(s)	116, 118, 351
Hin1II	CATG	2 cut(s)	54, 75
Hin6I	GCGC	3 cut(s)	114, 116, 349
HinP1I	GCGC	3 cut(s)	114, 116, 349
HinfI	GANTC	2 cut(s)	39, 174
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	2 cut(s)	366, 381
Hpy188III	TCNNGA	4 cut(s)	43, 159, 178, 329
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	7, 54, 71, 210, 323
Hsp92II	CATG	2 cut(s)	54, 75
HspAI	GCGC	3 cut(s)	114, 116, 349
Kzo9I	GATC	3 cut(s)	47, 109, 163
LmnI	GCTCC	2 cut(s)	136, 343
Lsp1109I	GCAGC	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	74, 283
MalI	GATC	3 cut(s)	49, 111, 165
MboI	GATC	3 cut(s)	47, 109, 163
MboII	GAAGA	1 cut(s)	403
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	3 cut(s)	122, 230, 324
MnlI	CCTC	2 cut(s)	51, 241
Mph1103I	ATGCAT	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	3 cut(s)	120, 125, 234
MspI	CCGG	1 cut(s)	36
MvnI	CGCG	3 cut(s)	44, 114, 116
NdeII	GATC	3 cut(s)	47, 109, 163
NlaIII	CATG	2 cut(s)	54, 75
NlaIV	GGNNCC	2 cut(s)	138, 252
NmuCI	GTSAC	1 cut(s)	74
NruI	TCGCGA	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	1 cut(s)	75
PauI	GCGCGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	39, 174
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	138, 252
PsuI	RGATCY	1 cut(s)	163
PteI	GCGCGC	1 cut(s)	114
RruI	TCGCGA	1 cut(s)	44
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	120, 125, 234
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	47, 109, 163
SetI	ASST	4 cut(s)	187, 256, 313, 322
SfcI	CTRYAG	1 cut(s)	404
Sse9I	AATT	3 cut(s)	122, 230, 324
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	29, 306
TasI	AATT	3 cut(s)	122, 230, 324
TfiI	GAWTC	2 cut(s)	39, 174
Tru1I	TTAA	3 cut(s)	120, 125, 234
Tru9I	TTAA	3 cut(s)	120, 125, 234
TscAI	CASTG	2 cut(s)	299, 348
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	299, 348
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.