Rorug02G0460800

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000796
Physical Location & Seq
Forward (+)
59263599 .. 59264330
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0460800.1

Sequence Viewer

Length: 690 bp
ATGGTGGAGAAGGACTTCAGGATTCAAGAGAAGACTGACAACCGGTTCCTGTTCTCCTTTTATTCGGTTTGGGATCGGAACAAGGTGCTTAGGGGCAGTGTGTGGTGCTTTGACAGAGCCCCAATCTGTTTGGAGGAGTATGATGGTGTTCTTCCCATCGCTGAAGTCCCTCTGAAGCATGTTAGGATGTGGGTTAGGGTTTCTGACATCCCTCCTCTCTACGAGGAACTTGATAATTTCATCCTCATTGGAAACTTGCTGGGTGTTCGAATTTTCTTCTCTCATGACATCTCCAAACAGGTTATTCTTGAGCGAAGGGTTTTTCTGGCCCCAGGCATAGAGCCTATTTTGCAGTTCCAGTTTGCACATCTCAAAGGGAGATGTCCTCAGTGTGGATTGATTACACATTCTGGGGCTAAATGTGAGGAGCCCAATGCGGCTGTTTCTGCTCCTAGGGTTTTGAATTTTGGTGGTGGCCCCTCTACCTCTGGCGGCCCCTTCTCCTTCTCTGCTCAGACTACTCGAGACCTACCTATGCCTTCTTCTTCCTTGCTAAAAAAGAAGCCAGTCATTCATCATCTAGAGCGTTCAATTTGTGGAATTGCTGCTCCTCAGGATATTGTGCACACCACGTCAGAGATGAAAGGTATGGATCAAGAGGTTGTATTGCAGGAAAAGACCACTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

229

Amino Acids

25.74

Weight (kDa)

7.04

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 437, 492
AclWI GGATC 2 cut(s) 81, 660
AcsI RAATTY 2 cut(s) 270, 463
AcuI CTGAAG 2 cut(s) 183, 194
AfiI CCNNNNNNNGG 1 cut(s) 392
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 3 cut(s) 26, 463, 591
AjiI CACGTC 1 cut(s) 633
AjnI CCWGG 1 cut(s) 331
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 1 cut(s) 519
Alw44I GTGCAC 1 cut(s) 623
AlwI GGATC 2 cut(s) 81, 660
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 3 cut(s) 327, 475, 493
ApaLI GTGCAC 1 cut(s) 623
ApeKI GCWGC 1 cut(s) 605
ApoI RAATTY 2 cut(s) 270, 463
AsiGI ACCGGT 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 14
AspA2I CCTAGG 1 cut(s) 452
AspS9I GGNCC 3 cut(s) 328, 476, 494
AsuII TTCGAA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 522
AvrII CCTAGG 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 612
BaeGI GKGCMC 1 cut(s) 627
BanII GRGCYC 2 cut(s) 121, 432
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 1 cut(s) 592
BccI CCATC 2 cut(s) 137, 164
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 2 cut(s) 453, 581
BisI GCNGC 3 cut(s) 438, 493, 606
BlnI CCTAGG 1 cut(s) 452
BlsI GCNGC 3 cut(s) 439, 494, 607
Bme1390I CCNGG 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 522
BmgBI CACGTC 1 cut(s) 633
BmgT120I GGNCC 3 cut(s) 328, 476, 494
BmiI GGNNCC 5 cut(s) 47, 330, 429, 478, 496
BmrFI CCNGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 370, 402
Bpu10I CCTNAGC 1 cut(s) 89
Bpu14I TTCGAA 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 331, 452
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 358, 566, 688
Bse21I CCTNAGG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 331, 452
BseGI GGATG 3 cut(s) 192, 207, 240
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 3 cut(s) 401, 527, 626
BseNI ACTGG 3 cut(s) 358, 566, 688
BseRI GAGGAG 4 cut(s) 149, 204, 440, 600
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 1 cut(s) 592
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 3 cut(s) 329, 477, 495
BshTI ACCGGT 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 3 cut(s) 329, 477, 495
Bso31I GGTCTC 1 cut(s) 519
BsoBI CYCGRG 1 cut(s) 522
Bsp119I TTCGAA 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 121, 432, 627
Bsp143I GATC 2 cut(s) 73, 652
BspACI CCGC 2 cut(s) 437, 492
BspANI GGCC 3 cut(s) 329, 477, 495
BspCNI CTCAG 3 cut(s) 400, 526, 625
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 5 cut(s) 47, 330, 429, 478, 496
BspPI GGATC 2 cut(s) 81, 660
BspT104I TTCGAA 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 3 cut(s) 358, 566, 688
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 331, 452
BssMI GATC 2 cut(s) 73, 652
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 333
BstBI TTCGAA 1 cut(s) 268
BstDEI CTNAG 4 cut(s) 89, 387, 513, 612
BstF5I GGATG 3 cut(s) 192, 207, 240
BstKTI GATC 2 cut(s) 76, 655
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 2 cut(s) 73, 652
BstMWI GCNNNNNNNGC 2 cut(s) 349, 446
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 38
Bsu36I CCTNAGG 1 cut(s) 612
BsuRI GGCC 3 cut(s) 329, 477, 495
BtgZI GCGATG 1 cut(s) 142
BtrI CACGTC 1 cut(s) 633
BtsCI GGATG 3 cut(s) 192, 207, 240
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 103, 395, 681
CciI TCATGA 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 328, 476, 494
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 2 cut(s) 179, 284
CviJI RGCY 9 cut(s) 119, 329, 343, 416, 430, 440, 477, 495, 565
CviKI_1 RGCY 9 cut(s) 119, 329, 343, 416, 430, 440, 477, 495, 565
DdeI CTNAG 4 cut(s) 89, 387, 513, 612
DpnI GATC 2 cut(s) 75, 654
DpnII GATC 2 cut(s) 73, 652
Eco130I CCWWGG 1 cut(s) 452
Eco24I GRGCYC 2 cut(s) 121, 432
Eco31I GGTCTC 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 183, 194
Eco81I CCTNAGG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 522
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 452
EcoT38I GRGCYC 2 cut(s) 121, 432
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 2 cut(s) 182, 287
FaiI YATR 6 cut(s) 141, 180, 285, 338, 536, 650
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 178, 283
Fnu4HI GCNGC 3 cut(s) 438, 493, 606
FokI GGATG 3 cut(s) 194, 199, 227
FriOI GRGCYC 2 cut(s) 121, 432
Fsp4HI GCNGC 3 cut(s) 438, 493, 606
FspBI CTAG 2 cut(s) 453, 581
GluI GCNGC 3 cut(s) 438, 493, 606
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 3 cut(s) 329, 477, 495
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 182, 287
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 5 cut(s) 78, 174, 205, 516, 637
Hpy188III TCNNGA 8 cut(s) 19, 26, 284, 308, 524, 581, 614, 656
Hpy8I GTNNAC 1 cut(s) 625
HpyAV CCTTC 5 cut(s) 4, 309, 508, 514, 549
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 4 cut(s) 352, 365, 625, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 446
HpyF3I CTNAG 4 cut(s) 89, 387, 513, 612
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 2 cut(s) 182, 287
Kzo9I GATC 2 cut(s) 73, 652
LmnI GCTCC 3 cut(s) 427, 454, 613
Lsp1109I GCAGC 1 cut(s) 592
MaeI CTAG 2 cut(s) 453, 581
MaeII ACGT 1 cut(s) 632
MalI GATC 2 cut(s) 75, 654
MboI GATC 2 cut(s) 73, 652
MboII GAAGA 5 cut(s) 43, 143, 268, 534, 537
MhlI GDGCHC 3 cut(s) 121, 432, 627
MluCI AATT 5 cut(s) 235, 270, 463, 591, 600
MroXI GAANNNNTTC 1 cut(s) 14
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 349, 446
NdeII GATC 2 cut(s) 73, 652
NlaIII CATG 2 cut(s) 182, 287
NlaIV GGNNCC 5 cut(s) 47, 330, 429, 478, 496
NspI RCATGY 1 cut(s) 182
NspV TTCGAA 1 cut(s) 268
PaeR7I CTCGAG 1 cut(s) 522
PagI TCATGA 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 22
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 3 cut(s) 439, 494, 607
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 5 cut(s) 47, 330, 429, 478, 496
PspPI GGNCC 3 cut(s) 328, 476, 494
SatI GCNGC 3 cut(s) 438, 493, 606
Sau3AI GATC 2 cut(s) 73, 652
Sau96I GGNCC 3 cut(s) 328, 476, 494
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 3 cut(s) 121, 432, 627
SetI ASST 8 cut(s) 87, 303, 488, 531, 535, 635, 649, 663
Sfr274I CTCGAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 268
SlaI CTCGAG 1 cut(s) 522
SmlI CTYRAG 2 cut(s) 308, 522
SmoI CTYRAG 2 cut(s) 308, 522
Sse9I AATT 5 cut(s) 235, 270, 463, 591, 600
SsiI CCGC 2 cut(s) 437, 492
SspMI CTAG 2 cut(s) 453, 581
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 452
TaiI ACGT 1 cut(s) 635
TaqI TCGA 2 cut(s) 268, 523
TasI AATT 5 cut(s) 235, 270, 463, 591, 600
TauI GCSGC 2 cut(s) 440, 495
TfiI GAWTC 1 cut(s) 22
TscAI CASTG 3 cut(s) 103, 395, 688
TseI GCWGC 1 cut(s) 605
TspDTI ATGAA 3 cut(s) 229, 563, 656
TspRI CASTG 3 cut(s) 103, 395, 688
VneI GTGCAC 1 cut(s) 623
XapI RAATTY 2 cut(s) 270, 463
XbaI TCTAGA 1 cut(s) 580
XceI RCATGY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 522
XmaJI CCTAGG 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 453, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.