Rh2AG525200

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
75392319 .. 75398190
5872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG525200.1

Sequence Viewer

Length: 1596 bp
ATGGAAGTGCAGGAGGCTATCAAATGTATGCGTCACTCGAGGAGAACTAAATTGACAGCTGATGATGTCGATGGTGCACTCAATTTAAGAAATGTCGAGCCACTATATGGTTTTGTGTCTGGAGGCCCCTTGCGTTTCAAAAAAGCAGTTGGACATAGGGATTTGTTTTACATTGATGACAAGGATGTGGATTTCAAAGATGTGATCGAAGCTCCTTTACCAAAAGCCCCACTTGATACTGGACTTGTTTGTCACTGGCTAGCAATAGAAGGTGTTCAACCTGCAATTCCGGAAAATGCACCTGTAGAAGCTCCTTCTGATGGCAAAAAGTATGAGCAAAAGGATGATGGACTTCCTGTTGAGCTTAAATTACCGGTTAAGCATGTATTGTCTAGAGAGCTTCAGCTATATTTTGACAAAATCACTGAGCTTGTCGTGAGTAGGTCCGATGTTATTCTTCTTAAAAAAGCACTATTGAGCTTGGCTACTGATTCGGGACTTCATCCATTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGGTTTCTCGTGGTTTGAGTGATTTTCCACTTCTGTTTGCTCTGATGCAAGTTGTTCATAGCCTTCTCCAGAATGCTCACATACACATTGAACCTTATGTAAGTGTTTCTTCTCTCTTTATTTTGCTAGGTAAACCTCATGTAAGGTTCACTCTGAGAAGGCTTTTTTTTTTTTTTTATCAGCTACATCAATTGATGCCATCTGTAGTTACTTGCCTTGTTGCAAAAAGATTGGGCAACAGGTTTGCTGACAACCATTGGGAACTTAGAGACTTCACGGCAAATCTGGTTGCTTCAATTTGTAAAAGGTTTGGGCATGTCTATAATACTCTCCAGTCACGACTTACAAAAACTTTGGTCAATGCATTTTTGGACCCAAAACGCACCTTGACTCAACACTACGGTGCAATTCAAGGTTTAGCTGCTCTAGGGCCCAGTGTGGTTCGCCTTCTGATACTGCCAAATCTGGAGTCATATCTGCGACTTCTGGAACCAGAGCTGCTTCTTGAGAAGCAAAAGAATGAGATAAAGAGGCATGAAGCTTGGCGTGTTTACGGAGCCTTGTTGAGTGCGGCAGGGCAATGCATATATGATAGACTGAAGATCTTCCCAACGTTGCCATCTCCTGTACCACAATCTCTCTGGAAGACCAATGAAAGAATTGTTCTCACTACGCCAAATAAACGGAAGAGAAGTGTGGAGCTCATGGAACAGCAACCAGCCCAGAAGAAAATTGCAACTGATGGCCCAACTGGTTTATCGGTAACTAATTCTTCACCATCTCAAATGCAAGTAGAAACAGCAGCTCCAGCTTCTTCAGGTGATATCAATATAGGCCCCTCATCATCATCTAGAAGTTTGTCTAATGAGAGCATTTCAAACAGCATAGGTGGAAAAGATGGGGCTGATGCTCAGTCTCTAAAGAAATCAGCTCTCCTCAATCAGGTCTGGAAGGACGAATTGAATTCTGGGAAACTACTGGTATCATTGTTTCAGTTGTTTGGTGAAGACATTCTCCCCTTCATTCCAGCTCCGGAGATGTCTTTGTTTCTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

59.24

Weight (kDa)

8.68

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF PF02969 3 - 27 3.1e-08 TATA box binding protein associated factor (TAF)
TAF6_C PF07571 126 - 215 3e-28 TAF6 C-terminal HEAT repeat domain
TAF6_C PF07571 242 - 337 9.3e-37 TAF6 C-terminal HEAT repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 289
AccB7I CCANNNNNTGG 1 cut(s) 107
AccIII TCCGGA 2 cut(s) 289, 1573
AciI CCGC 1 cut(s) 1112
AclI AACGTT 1 cut(s) 1154
AcsI RAATTY 1 cut(s) 1504
AcuI CTGAAG 3 cut(s) 386, 1160, 1341
AfaI GTAC 1 cut(s) 1170
AfiI CCNNNNNNNGG 3 cut(s) 107, 320, 1483
AgeI ACCGGT 1 cut(s) 373
AgsI TTSAA 8 cut(s) 139, 196, 278, 632, 837, 953, 1419, 1504
AleI CACNNNNGTG 1 cut(s) 942
Alw21I GWGCWC 2 cut(s) 79, 1245
Alw26I GTCTC 2 cut(s) 804, 1461
Alw44I GTGCAC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 37
Aor13HI TCCGGA 2 cut(s) 289, 1573
AoxI GGCC 4 cut(s) 124, 971, 1285, 1375
ApaI GGGCCC 1 cut(s) 975
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 962, 1039, 1343
ApoI RAATTY 1 cut(s) 1504
ArsI GACNNNNNNTTYG 2 cut(s) 995, 1027
AsiGI ACCGGT 1 cut(s) 373
Asp700I GAANNNNTTC 3 cut(s) 273, 1145, 1551
AspS9I GGNCC 7 cut(s) 125, 444, 913, 971, 972, 1286, 1376
AsuHPI GGTGA 3 cut(s) 1308, 1373, 1556
AsuNHI GCTAGC 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 2 cut(s) 444, 913
BaeGI GKGCMC 2 cut(s) 79, 975
BanII GRGCYC 2 cut(s) 975, 1245
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 2 cut(s) 1193, 1554
Bbv12I GWGCWC 2 cut(s) 79, 1245
BbvI GCAGC 3 cut(s) 949, 1026, 1355
BccI CCATC 8 cut(s) 65, 314, 341, 748, 1168, 1277, 1327, 1433
BceAI ACGGC 1 cut(s) 834
BcoDI GTCTC 2 cut(s) 804, 1461
BfaI CTAG 5 cut(s) 260, 393, 668, 968, 1392
BfmI CTRYAG 2 cut(s) 303, 744
BfuAI ACCTGC 1 cut(s) 289
BglII AGATCT 1 cut(s) 1143
BisI GCNGC 4 cut(s) 963, 1040, 1113, 1344
BlsI GCNGC 4 cut(s) 964, 1041, 1114, 1345
Bme18I GGWCC 2 cut(s) 444, 913
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 7 cut(s) 125, 444, 913, 971, 972, 1286, 1376
BmiI GGNNCC 6 cut(s) 127, 915, 973, 1032, 1099, 1378
BmrI ACTGGG 1 cut(s) 969
BmsI GCATC 3 cut(s) 576, 726, 1438
BmtI GCTAGC 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 969
BpiI GAAGAC 2 cut(s) 1193, 1554
BpmI CTGGAG 5 cut(s) 141, 593, 857, 1028, 1332
BpuEI CTTGAG 1 cut(s) 1067
BsaWI WCCGGW 3 cut(s) 289, 373, 1573
BsaXI ACNNNNNCTCC 2 cut(s) 1330, 1360
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 320, 1483
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 6 cut(s) 244, 260, 874, 975, 1297, 1524
Bse3DI GCAATG 1 cut(s) 1127
BseAI TCCGGA 2 cut(s) 289, 1573
BseGI GGATG 3 cut(s) 190, 349, 502
BseLI CCNNNNNNNGG 3 cut(s) 107, 320, 1483
BseMI GCAATG 1 cut(s) 1127
BseMII CTCAG 3 cut(s) 417, 686, 1466
BseNI ACTGG 6 cut(s) 244, 260, 874, 975, 1297, 1524
BseRI GAGGAG 2 cut(s) 55, 1466
BseSI GKGCMC 2 cut(s) 79, 975
BseXI GCAGC 3 cut(s) 949, 1026, 1355
BsgI GTGCAG 1 cut(s) 29
BshFI GGCC 4 cut(s) 126, 973, 1287, 1377
BshTI ACCGGT 1 cut(s) 373
BsiHKAI GWGCWC 2 cut(s) 79, 1245
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 3 cut(s) 290, 374, 1574
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 3 cut(s) 107, 320, 1483
BsmAI GTCTC 2 cut(s) 804, 1461
BsmFI GGGAC 1 cut(s) 510
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 4 cut(s) 126, 973, 1287, 1377
BsoBI CYCGRG 1 cut(s) 37
Bsp120I GGGCCC 1 cut(s) 971
Bsp1286I GDGCHC 3 cut(s) 79, 975, 1245
Bsp13I TCCGGA 2 cut(s) 289, 1573
Bsp143I GATC 2 cut(s) 204, 1143
BspACI CCGC 1 cut(s) 1112
BspANI GGCC 4 cut(s) 126, 973, 1287, 1377
BspCNI CTCAG 3 cut(s) 418, 687, 1465
BspEI TCCGGA 2 cut(s) 289, 1573
BspLI GGNNCC 6 cut(s) 127, 915, 973, 1032, 1099, 1378
BspMI ACCTGC 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 1127
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 6 cut(s) 244, 260, 874, 975, 1297, 1524
BssAI RCCGGY 1 cut(s) 373
BssMI GATC 2 cut(s) 204, 1143
BssSI CACGAG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 944
Bst6I CTCTTC 1 cut(s) 1223
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 426, 695, 806, 1452
BstENI CCTNNNNNAGG 1 cut(s) 1481
BstF5I GGATG 3 cut(s) 190, 349, 502
BstKTI GATC 2 cut(s) 207, 1146
BstMAI GTCTC 2 cut(s) 804, 1461
BstMBI GATC 2 cut(s) 204, 1143
BstMWI GCNNNNNNNGC 1 cut(s) 1349
BstNSI RCATGY 3 cut(s) 386, 528, 860
BstSFI CTRYAG 2 cut(s) 303, 744
BstSLI GKGCMC 2 cut(s) 79, 975
BstV1I GCAGC 3 cut(s) 949, 1026, 1355
BstV2I GAAGAC 2 cut(s) 1193, 1554
BstX2I RGATCY 1 cut(s) 1143
BstYI RGATCY 1 cut(s) 1143
BsuRI GGCC 4 cut(s) 126, 973, 1287, 1377
BtsCI GGATG 3 cut(s) 190, 349, 502
BtsIMutI CAGTG 3 cut(s) 253, 423, 982
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 7 cut(s) 125, 444, 913, 971, 972, 1286, 1376
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 1169
CspAI ACCGGT 1 cut(s) 373
CviAII CATG 6 cut(s) 383, 525, 680, 857, 1076, 1246
CviQI GTAC 1 cut(s) 1169
DdeI CTNAG 4 cut(s) 426, 695, 806, 1452
DpnI GATC 2 cut(s) 206, 1145
DpnII GATC 2 cut(s) 204, 1143
DrdI GACNNNNNNGTC 1 cut(s) 249
DseDI GACNNNNNNGTC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 1223
EarI CTCTTC 1 cut(s) 1223
Ecl136II GAGCTC 1 cut(s) 1243
Eco24I GRGCYC 2 cut(s) 975, 1245
Eco32I GATATC 1 cut(s) 1366
Eco47I GGWCC 2 cut(s) 444, 913
Eco53kI GAGCTC 1 cut(s) 1243
Eco57I CTGAAG 3 cut(s) 386, 1160, 1341
Eco88I CYCGRG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 1243
EcoNI CCTNNNNNAGG 1 cut(s) 1481
EcoO109I RGGNCCY 3 cut(s) 125, 971, 1376
EcoRI GAATTC 1 cut(s) 1504
EcoRV GATATC 1 cut(s) 1366
EcoT22I ATGCAT 2 cut(s) 907, 1127
EcoT38I GRGCYC 2 cut(s) 975, 1245
FaeI CATG 6 cut(s) 386, 528, 683, 860, 1079, 1249
FalI AAGNNNNNCTT 4 cut(s) 216, 248, 634, 666
FaqI GGGAC 1 cut(s) 510
FatI CATG 6 cut(s) 382, 524, 679, 856, 1075, 1245
Fnu4HI GCNGC 4 cut(s) 963, 1040, 1113, 1344
FokI GGATG 3 cut(s) 197, 356, 489
FriOI GRGCYC 2 cut(s) 975, 1245
Fsp4HI GCNGC 4 cut(s) 963, 1040, 1113, 1344
FspBI CTAG 5 cut(s) 260, 393, 668, 968, 1392
GluI GCNGC 4 cut(s) 963, 1040, 1113, 1344
GsuI CTGGAG 5 cut(s) 141, 593, 857, 1028, 1332
HaeIII GGCC 4 cut(s) 126, 973, 1287, 1377
HapII CCGG 3 cut(s) 290, 374, 1574
HgaI GACGC 1 cut(s) 20
Hin1II CATG 6 cut(s) 386, 528, 683, 860, 1079, 1249
HindIII AAGCTT 1 cut(s) 1080
HinfI GANTC 3 cut(s) 491, 931, 1010
HpaII CCGG 3 cut(s) 290, 374, 1574
HphI GGTGA 3 cut(s) 1308, 1373, 1556
Hpy166II GTNNAC 4 cut(s) 77, 674, 690, 1093
Hpy188I TCNGA 5 cut(s) 319, 448, 585, 696, 993
Hpy8I GTNNAC 4 cut(s) 77, 674, 690, 1093
HpyAV CCTTC 7 cut(s) 263, 324, 614, 693, 998, 1486, 1570
HpyCH4III ACNGT 1 cut(s) 944
HpyCH4IV ACGT 1 cut(s) 1154
HpyF10VI GCNNNNNNNGC 1 cut(s) 1349
HpyF3I CTNAG 4 cut(s) 426, 695, 806, 1452
HpySE526I ACGT 1 cut(s) 1154
Hsp92II CATG 6 cut(s) 386, 528, 683, 860, 1079, 1249
Kpn2I TCCGGA 2 cut(s) 289, 1573
Kzo9I GATC 2 cut(s) 204, 1143
LmnI GCTCC 6 cut(s) 217, 316, 1097, 1240, 1351, 1576
Lsp1109I GCAGC 3 cut(s) 949, 1026, 1355
LweI GCATC 3 cut(s) 576, 726, 1438
MaeI CTAG 5 cut(s) 260, 393, 668, 968, 1392
MaeII ACGT 1 cut(s) 1154
MaeIII GTNAC 5 cut(s) 32, 251, 748, 876, 1303
MalI GATC 2 cut(s) 206, 1145
MboI GATC 2 cut(s) 204, 1143
MfeI CAATTG 1 cut(s) 731
MflI RGATCY 1 cut(s) 1143
MhlI GDGCHC 3 cut(s) 79, 975, 1245
MlyI GAGTC 2 cut(s) 925, 1019
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 8 cut(s) 7, 33, 116, 535, 687, 1065, 1390, 1487
Mph1103I ATGCAT 2 cut(s) 907, 1127
MroI TCCGGA 2 cut(s) 289, 1573
MroXI GAANNNNTTC 3 cut(s) 273, 1145, 1551
MseI TTAA 4 cut(s) 86, 366, 378, 462
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 290, 374, 1574
MunI CAATTG 1 cut(s) 731
Mva1269I GAATGC 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 1349
NdeII GATC 2 cut(s) 204, 1143
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 6 cut(s) 386, 528, 683, 860, 1079, 1249
NlaIV GGNNCC 6 cut(s) 127, 915, 973, 1032, 1099, 1378
NmuCI GTSAC 3 cut(s) 32, 251, 876
NsiI ATGCAT 2 cut(s) 907, 1127
NspI RCATGY 3 cut(s) 386, 528, 860
OliI CACNNNNGTG 1 cut(s) 942
PaeR7I CTCGAG 1 cut(s) 37
PctI GAATGC 1 cut(s) 619
PdmI GAANNNNTTC 3 cut(s) 273, 1145, 1551
PfeI GAWTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 107
PinAI ACCGGT 1 cut(s) 373
PkrI GCNGC 4 cut(s) 964, 1041, 1114, 1345
PleI GAGTC 2 cut(s) 925, 1018
PpsI GAGTC 2 cut(s) 925, 1018
Psp124BI GAGCTC 1 cut(s) 1245
Psp1406I AACGTT 1 cut(s) 1154
PspN4I GGNNCC 6 cut(s) 127, 915, 973, 1032, 1099, 1378
PspOMI GGGCCC 1 cut(s) 971
PspPI GGNCC 7 cut(s) 125, 444, 913, 971, 972, 1286, 1376
PspXI VCTCGAGB 1 cut(s) 37
PsuI RGATCY 1 cut(s) 1143
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 1170
RsaNI GTAC 1 cut(s) 1169
RseI CAYNNNNRTG 1 cut(s) 942
SacI GAGCTC 1 cut(s) 1245
SaqAI TTAA 4 cut(s) 86, 366, 378, 462
SatI GCNGC 4 cut(s) 963, 1040, 1113, 1344
Sau3AI GATC 2 cut(s) 204, 1143
Sau96I GGNCC 7 cut(s) 125, 444, 913, 971, 972, 1286, 1376
SchI GAGTC 2 cut(s) 925, 1019
SduI GDGCHC 3 cut(s) 79, 975, 1245
SfaNI GCATC 3 cut(s) 576, 726, 1438
SfcI CTRYAG 2 cut(s) 303, 744
Sfr274I CTCGAG 1 cut(s) 37
SinI GGWCC 2 cut(s) 444, 913
SlaI CTCGAG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 2 cut(s) 37, 1046
SmoI CTYRAG 2 cut(s) 37, 1046
SsiI CCGC 1 cut(s) 1112
SspMI CTAG 5 cut(s) 260, 393, 668, 968, 1392
SstI GAGCTC 1 cut(s) 1245
TaaI ACNGT 1 cut(s) 944
TaiI ACGT 1 cut(s) 1157
TaqI TCGA 4 cut(s) 38, 69, 96, 207
TauI GCSGC 1 cut(s) 1115
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 4 cut(s) 86, 366, 378, 462
Tru9I TTAA 4 cut(s) 86, 366, 378, 462
TscAI CASTG 3 cut(s) 260, 430, 982
TseFI GTSAC 3 cut(s) 32, 251, 876
TseI GCWGC 3 cut(s) 962, 1039, 1343
Tsp45I GTSAC 3 cut(s) 32, 251, 876
TspDTI ATGAA 5 cut(s) 491, 587, 1092, 1209, 1552
TspGWI ACGGA 2 cut(s) 1110, 1240
TspRI CASTG 3 cut(s) 260, 430, 982
Van91I CCANNNNNTGG 1 cut(s) 107
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 444, 913
XagI CCTNNNNNAGG 1 cut(s) 1481
XapI RAATTY 1 cut(s) 1504
XbaI TCTAGA 2 cut(s) 392, 1391
XceI RCATGY 3 cut(s) 386, 528, 860
XcmI CCANNNNNNNNNTGG 1 cut(s) 1179
XhoI CTCGAG 1 cut(s) 37
XmnI GAANNNNTTC 3 cut(s) 273, 1145, 1551
XspI CTAG 5 cut(s) 260, 393, 668, 968, 1392
Zsp2I ATGCAT 2 cut(s) 907, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.