Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

36962583 .. 36964444

Gene Structure 1862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATAACTCCAAATTGGACTCATTACTATATGTTACTTATTTGTGGCAGTGTTTTCCTGCGATCATCTCGGGTTACATGCAATTTGAATAATTTTCTCCTCCTAGTTGCTTTAATGCGTCTTGTCCGGAGCCTTCTTCAAAATCCTCACATACATGTTGAACCTTATCTACACCAATTGATGCCTTCTGTTATTACCTGCCTTGTTGCAAAAAGACTAGGGAATAGATATACTGACAATCACTGGGAACTTAGAAACCTTACTGCCAACCTGGTTTCTTCAATCTGCAAAAGATTTAGACATTTTTGTCATAATCTTCAGCCACGTTTGACAAGGACCTTGCTTCACGCTTTCTTGGACCTAACCAAAGCATTACCCCAACATTATGGCGCAATTCAAGGGCTAGCAGCTCTTGGTCCCAATGTGGTTCGCTTTCTTATACTACCAAATCTCGATTCGTATATGCAACTTCTTGAGCCAGAAATGATACTTGAGAAGCAAAAGAATGAGATAAAGAGGCATGAAGCTTGGCATGTCTATGGGGCCTTTGCTGCGTGCGGCTGGCCAATGCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

192

Amino Acids

22.29

Weight (kDa)

9.53

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF6_C	PF07571	23 - 151	1.8e-49	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	1 cut(s)	558
AcoI	YGGCCR	1 cut(s)	563
AcuI	CTGAAG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	5 cut(s)	88, 140, 161, 282, 398
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AluBI	AGCT	2 cut(s)	410, 527
AluI	AGCT	2 cut(s)	410, 527
Ama87I	CYCGRG	1 cut(s)	69
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	2 cut(s)	543, 563
ApeKI	GCWGC	2 cut(s)	407, 551
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	4 cut(s)	336, 358, 416, 543
AsuNHI	GCTAGC	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	3 cut(s)	336, 358, 416
BalI	TGGCCA	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	419, 538
BciT130I	CCWGG	1 cut(s)	272
BfaI	CTAG	3 cut(s)	104, 218, 404
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	408, 552, 559
BlsI	GCNGC	3 cut(s)	409, 553, 560
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	3 cut(s)	336, 358, 416
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	4 cut(s)	336, 358, 416, 543
BmiI	GGNNCC	3 cut(s)	131, 418, 544
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	171
BmtI	GCTAGC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	253
BpuEI	CTTGAG	2 cut(s)	494, 512
BsaWI	WCCGGW	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	419, 538
BshFI	GGCC	2 cut(s)	545, 565
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	545, 565
BsoBI	CYCGRG	1 cut(s)	69
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	62
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	545, 565
BspEI	TCCGGA	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	131, 418, 544
BspMI	ACCTGC	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	272
BstC8I	GCNNGC	4 cut(s)	405, 556, 563, 573
BstDEI	CTNAG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	62
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	4 cut(s)	81, 158, 536, 575
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	419, 538
BstXI	CCANNNNNNTGG	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	545, 565
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 241
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	4 cut(s)	405, 556, 563, 573
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	4 cut(s)	336, 358, 416, 543
CseI	GACGC	1 cut(s)	107
CsiI	ACCWGGT	1 cut(s)	270
CviAII	CATG	6 cut(s)	78, 155, 521, 533, 572, 576
CviJI	RGCY	9 cut(s)	132, 322, 403, 410, 478, 527, 545, 561, 565
CviKI_1	RGCY	9 cut(s)	132, 322, 403, 410, 478, 527, 545, 561, 565
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	1 cut(s)	64
DpnII	GATC	1 cut(s)	62
DrdI	GACNNNNNNGTC	1 cut(s)	306
DseDI	GACNNNNNNGTC	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	563
Eco47I	GGWCC	3 cut(s)	336, 358, 416
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	69
EcoO109I	RGGNCCY	2 cut(s)	336, 543
EcoRII	CCWGG	1 cut(s)	270
EcoT22I	ATGCAT	2 cut(s)	573, 577
FaeI	CATG	6 cut(s)	81, 158, 524, 536, 575, 579
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	6 cut(s)	77, 154, 520, 532, 571, 575
Fnu4HI	GCNGC	3 cut(s)	408, 552, 559
Fsp4HI	GCNGC	3 cut(s)	408, 552, 559
FspBI	CTAG	3 cut(s)	104, 218, 404
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	3 cut(s)	408, 552, 559
HaeIII	GGCC	2 cut(s)	545, 565
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	6 cut(s)	81, 158, 524, 536, 575, 579
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	2 cut(s)	19, 455
HpaII	CCGG	1 cut(s)	127
Hpy188III	TCNNGA	3 cut(s)	127, 452, 473
HpyAV	CCTTC	2 cut(s)	143, 195
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	6 cut(s)	81, 209, 288, 466, 571, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	6 cut(s)	81, 158, 524, 536, 575, 579
HspAI	GCGC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	8 cut(s)	71, 140, 211, 229, 257, 284, 492, 547
Lsp1109I	GCAGC	2 cut(s)	419, 538
LweI	GCATC	1 cut(s)	171
MabI	ACCWGGT	1 cut(s)	270
MaeI	CTAG	3 cut(s)	104, 218, 404
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	33, 73
MalI	GATC	1 cut(s)	64
MboI	GATC	1 cut(s)	62
MboII	GAAGA	3 cut(s)	128, 270, 308
MfeI	CAATTG	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	565
MluCI	AATT	5 cut(s)	13, 82, 91, 176, 393
MluNI	TGGCCA	1 cut(s)	565
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	110, 156, 510
Mox20I	TGGCCA	1 cut(s)	565
Mph1103I	ATGCAT	2 cut(s)	573, 577
MroI	TCCGGA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	565
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	2 cut(s)	153, 537
Msp20I	TGGCCA	1 cut(s)	565
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeII	GATC	1 cut(s)	62
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	6 cut(s)	81, 158, 524, 536, 575, 579
NlaIV	GGNNCC	3 cut(s)	131, 418, 544
NsiI	ATGCAT	2 cut(s)	573, 577
NspI	RCATGY	4 cut(s)	81, 158, 536, 575
PaeI	GCATGC	1 cut(s)	575
PciI	ACATGT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	3 cut(s)	409, 553, 560
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	336
PscI	ACATGT	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	131, 418, 544
PspPI	GGNCC	4 cut(s)	336, 358, 416, 543
PspPPI	RGGWCCY	1 cut(s)	336
PsrI	GAACNNNNNNTAC	2 cut(s)	153, 185
RseI	CAYNNNNRTG	2 cut(s)	153, 537
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	408, 552, 559
Sau3AI	GATC	1 cut(s)	62
Sau96I	GGNCC	4 cut(s)	336, 358, 416, 543
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	9 cut(s)	166, 200, 261, 273, 328, 341, 363, 412, 529
SexAI	ACCWGGT	1 cut(s)	270
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	3 cut(s)	336, 358, 416
SmiMI	CAYNNNNRTG	2 cut(s)	153, 537
SmlI	CTYRAG	2 cut(s)	473, 491
SmoI	CTYRAG	2 cut(s)	473, 491
SphI	GCATGC	1 cut(s)	575
Sse9I	AATT	5 cut(s)	13, 82, 91, 176, 393
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	3 cut(s)	104, 218, 404
StyD4I	CCNGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	453
TasI	AATT	5 cut(s)	13, 82, 91, 176, 393
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	55, 248
TseI	GCWGC	2 cut(s)	407, 551
TspDTI	ATGAA	1 cut(s)	537
TspRI	CASTG	2 cut(s)	55, 248
VpaK11BI	GGWCC	3 cut(s)	336, 358, 416
XceI	RCATGY	4 cut(s)	81, 158, 536, 575
XspI	CTAG	3 cut(s)	104, 218, 404
Zsp2I	ATGCAT	2 cut(s)	573, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.