Rorug02G0460600

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000796
Physical Location & Seq
Forward (+)
59259440 .. 59261391
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0460600.1

Sequence Viewer

Length: 1257 bp
ATGAACAACTGTGAGGTTTTGAAGCATTCACTTTTGCAATTTTTTTGGGAGTTTGCTGTCATAAACAATCTTGAAGATGCACATCAAAAGATCGATACAGCAATTTCAACAGCCTTGAGAGAAAGCAAGCCAGTTTATATCAGCATAAGTTGTAACTTGGTTGGGATTCCTCATCCTAGCTTTAGCCGTGAGCCTATTCCAATTACATTGCATCCCAGATTAAGTAATCGGATGGCCTTAGATGCTGCAGTGGAGGTAGCAGCAGAGTTCTTGAACAAGGCAGTGAAACCAGTTATGGTAGGTGGTCCTGAACTCCGGGTTGCAAAAGCTGGCGATGCCTTTGTTAAACTGGCTGATGATTCTGGTTATGCCACGGCTGTTTTTCCAGCAGCAAAGGGGCTTGTGCCAGAGAATCACCCCCGATTTATTGGTACATACTGGGGTGTTGCAAGTACCGCCTTTTGTTCGGAGATAGTTGAGTCCGCAGATGCATACTTATTTGCTGGACCAATTTTTGACGACCTCACCTCTATCGGGAATTCACCCCTTCCCAATAAAAGTAAATCCATCATCGTGAAGCCCGACCTCATTATAATAGCAAACAAGCATGAATTCGGGTCTGTTCTCATGAAGGATTTCCTCAAAGCTCTAGCAAAAAGGTTGAAGCGTAATGACACTGCCTATATGAACTATAATAGGATCTTTGTTCCGGAGGGGCAACCTTGGACGTCTGTTCCCAATGAGCCTTTGAGGGTTAACGTTATGTTCCAACACATCCAGAAGATTTTGTCAAGTCAAACAACTGTGGTTGCTGACGCAGGAGCTACGTGGTTTAATTGCGTGAAACTGAAATTGCCGCCAGGTTGCCGGTGTGAGTTCCAGGTGCAGTATGCATCGATTGGTTGGTCAGTTGGAGCCACTCTTGGTTATACTCAGGCCTCACCTACCAAGCAAGTGATCGCTTTCGTTGGTGATGGGAGCTTCCAGATGACTGCCCAAGATGTGTCAACGATGCTGAGAAATGGGCAGAGAAACATCATCTTTCTGATGAACAATGGCGGATATACCATTGAAGTGGAGATCCATGATGGACCTTACAATGTGATCAAGAACTGGAACTACACTGGATTAGTTGATGCCATCCATAATGGGGACGGCAAGTGCTGGACAGCCAAGGTGCGGTGTGAAGAGGAATTGATTGAAGCAATAGAGACGGCAAATGGAGCAAGAAGGATAGTTTGTGCTTCATTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

418

Amino Acids

46.01

Weight (kDa)

7.1

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPP_enzyme_M PF00205 85 - 203 5.8e-21 Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C PF02775 296 - 406 1.1e-14 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AatII GACGTC 1 cut(s) 731
AccIII TCCGGA 1 cut(s) 709
AciI CCGC 5 cut(s) 456, 483, 857, 1059, 1180
AclI AACGTT 1 cut(s) 759
AclWI GGATC 2 cut(s) 707, 1075
AcsI RAATTY 2 cut(s) 538, 611
AcyI GRCGYC 1 cut(s) 728
AfaI GTAC 2 cut(s) 433, 454
AfiI CCNNNNNNNGG 3 cut(s) 534, 1150, 1179
AgsI TTSAA 7 cut(s) 22, 74, 108, 274, 664, 1073, 1202
AjnI CCWGG 2 cut(s) 859, 879
AluBI AGCT 5 cut(s) 180, 329, 647, 824, 981
AluI AGCT 5 cut(s) 180, 329, 647, 824, 981
Alw26I GTCTC 1 cut(s) 1205
AlwI GGATC 2 cut(s) 707, 1075
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 2 cut(s) 234, 936
ApeKI GCWGC 3 cut(s) 245, 260, 389
ApoI RAATTY 2 cut(s) 538, 611
Asp700I GAANNNNTTC 1 cut(s) 635
AspS9I GGNCC 3 cut(s) 305, 506, 1091
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 5 cut(s) 407, 517, 534, 933, 983
AvaII GGWCC 3 cut(s) 305, 506, 1091
BbvI GCAGC 3 cut(s) 232, 272, 401
BccI CCATC 5 cut(s) 226, 575, 968, 1082, 1148
BceAI ACGGC 4 cut(s) 171, 390, 1171, 1230
BciT130I CCWGG 2 cut(s) 861, 881
BclI TGATCA 1 cut(s) 1104
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 1205
BfaI CTAG 2 cut(s) 177, 650
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 4 cut(s) 246, 261, 390, 857
BlsI GCNGC 4 cut(s) 247, 262, 391, 858
Bme1390I CCNGG 3 cut(s) 317, 861, 881
Bme18I GGWCC 3 cut(s) 305, 506, 1091
BmgT120I GGNCC 3 cut(s) 305, 506, 1091
BmiI GGNNCC 1 cut(s) 916
BmrFI CCNGG 3 cut(s) 317, 861, 881
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 8 cut(s) 67, 220, 232, 325, 478, 902, 1002, 1126
BmuI ACTGGG 1 cut(s) 448
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 2 cut(s) 93, 896
BsaAI YACGTR 1 cut(s) 828
BsaBI GATNNNNATC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 728
BsaJI CCNNGG 3 cut(s) 372, 722, 1173
BsaWI WCCGGW 1 cut(s) 709
Bsc4I CCNNNNNNNGG 3 cut(s) 534, 1150, 1179
Bse118I RCCGGY 1 cut(s) 867
Bse1I ACTGG 6 cut(s) 131, 290, 354, 443, 1118, 1129
Bse3DI GCAATG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 2 cut(s) 861, 881
BseCI ATCGAT 2 cut(s) 93, 896
BseDI CCNNGG 3 cut(s) 372, 722, 1173
BseGI GGATG 5 cut(s) 172, 211, 237, 774, 1140
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 534, 1150, 1179
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 947, 1007
BseNI ACTGG 6 cut(s) 131, 290, 354, 443, 1118, 1129
BseXI GCAGC 3 cut(s) 232, 272, 401
BsgI GTGCAG 1 cut(s) 905
BshFI GGCC 2 cut(s) 236, 938
BshVI ATCGAT 2 cut(s) 93, 896
BsiSI CCGG 3 cut(s) 316, 710, 868
BslFI GGGAC 1 cut(s) 1166
BslI CCNNNNNNNGG 3 cut(s) 534, 1150, 1179
BsmAI GTCTC 1 cut(s) 1205
BsmBI CGTCTC 1 cut(s) 1205
BsmFI GGGAC 1 cut(s) 1166
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 2 cut(s) 236, 938
Bsp13I TCCGGA 1 cut(s) 709
Bsp143I GATC 5 cut(s) 90, 699, 957, 1080, 1104
BspACI CCGC 5 cut(s) 456, 483, 857, 1059, 1180
BspANI GGCC 2 cut(s) 236, 938
BspCNI CTCAG 2 cut(s) 946, 1008
BspDI ATCGAT 2 cut(s) 93, 896
BspEI TCCGGA 1 cut(s) 709
BspHI TCATGA 1 cut(s) 627
BspLI GGNNCC 1 cut(s) 916
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 2 cut(s) 707, 1075
BsrDI GCAATG 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 867
BsrI ACTGG 6 cut(s) 131, 290, 354, 443, 1118, 1129
BssAI RCCGGY 1 cut(s) 867
BssECI CCNNGG 3 cut(s) 372, 722, 1173
BssMI GATC 5 cut(s) 90, 699, 957, 1080, 1104
BssNI GRCGYC 1 cut(s) 728
BssT1I CCWWGG 2 cut(s) 722, 1173
Bst2UI CCWGG 2 cut(s) 861, 881
Bst4CI ACNGT 2 cut(s) 11, 805
Bst6I CTCTTC 1 cut(s) 1182
BstACI GRCGYC 1 cut(s) 728
BstBAI YACGTR 1 cut(s) 828
BstC8I GCNNGC 2 cut(s) 128, 331
BstDEI CTNAG 3 cut(s) 238, 933, 1016
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 5 cut(s) 172, 211, 237, 774, 1140
BstKTI GATC 5 cut(s) 93, 702, 960, 1083, 1107
BstMAI GTCTC 1 cut(s) 1205
BstMBI GATC 5 cut(s) 90, 699, 957, 1080, 1104
BstMWI GCNNNNNNNGC 4 cut(s) 242, 335, 455, 1223
BstNI CCWGG 2 cut(s) 861, 881
BstSCI CCNGG 3 cut(s) 315, 859, 879
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 232, 272, 401
BstX2I RGATCY 2 cut(s) 699, 1080
BstXI CCANNNNNNTGG 1 cut(s) 1075
BstYI RGATCY 2 cut(s) 699, 1080
Bsu15I ATCGAT 2 cut(s) 93, 896
BsuRI GGCC 2 cut(s) 236, 938
BsuTUI ATCGAT 2 cut(s) 93, 896
BtgI CCRYGG 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 5 cut(s) 172, 211, 237, 774, 1140
BtsI GCAGTG 3 cut(s) 255, 288, 675
BtsIMutI CAGTG 4 cut(s) 255, 288, 675, 1122
Cac8I GCNNGC 2 cut(s) 128, 331
CciI TCATGA 1 cut(s) 627
Cfr10I RCCGGY 1 cut(s) 867
Cfr13I GGNCC 3 cut(s) 305, 506, 1091
ClaI ATCGAT 2 cut(s) 93, 896
CseI GACGC 1 cut(s) 824
Csp6I GTAC 2 cut(s) 432, 453
CviAII CATG 3 cut(s) 608, 628, 1085
CviQI GTAC 2 cut(s) 432, 453
DdeI CTNAG 3 cut(s) 238, 933, 1016
DpnI GATC 5 cut(s) 92, 701, 959, 1082, 1106
DpnII GATC 5 cut(s) 90, 699, 957, 1080, 1104
Eam1104I CTCTTC 1 cut(s) 1182
EarI CTCTTC 1 cut(s) 1182
EciI GGCGGA 1 cut(s) 1074
Eco130I CCWWGG 2 cut(s) 722, 1173
Eco147I AGGCCT 1 cut(s) 938
Eco47I GGWCC 3 cut(s) 305, 506, 1091
EcoRI GAATTC 2 cut(s) 538, 611
EcoRII CCWGG 2 cut(s) 859, 879
EcoT14I CCWWGG 2 cut(s) 722, 1173
EcoT22I ATGCAT 2 cut(s) 493, 895
ErhI CCWWGG 2 cut(s) 722, 1173
Esp3I CGTCTC 1 cut(s) 1205
FaeI CATG 3 cut(s) 611, 631, 1088
FaqI GGGAC 1 cut(s) 1166
FatI CATG 3 cut(s) 607, 627, 1084
FbaI TGATCA 1 cut(s) 1104
Fnu4HI GCNGC 4 cut(s) 246, 261, 390, 857
FokI GGATG 5 cut(s) 159, 198, 244, 761, 1127
Fsp4HI GCNGC 4 cut(s) 246, 261, 390, 857
FspBI CTAG 2 cut(s) 177, 650
GluI GCNGC 4 cut(s) 246, 261, 390, 857
HaeIII GGCC 2 cut(s) 236, 938
HapII CCGG 3 cut(s) 316, 710, 868
HgaI GACGC 1 cut(s) 824
Hin1I GRCGYC 1 cut(s) 728
Hin1II CATG 3 cut(s) 611, 631, 1088
HincII GTYRAC 2 cut(s) 757, 1008
HindII GTYRAC 2 cut(s) 757, 1008
HinfI GANTC 4 cut(s) 166, 359, 412, 479
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 3 cut(s) 316, 710, 868
HphI GGTGA 5 cut(s) 407, 517, 534, 933, 983
Hpy166II GTNNAC 2 cut(s) 757, 1008
Hpy188I TCNGA 3 cut(s) 231, 469, 1047
Hpy8I GTNNAC 2 cut(s) 757, 1008
HpyAV CCTTC 3 cut(s) 557, 625, 1224
HpyCH4III ACNGT 2 cut(s) 11, 805
HpyCH4IV ACGT 3 cut(s) 728, 759, 827
HpyCH4V TGCA 9 cut(s) 37, 80, 211, 248, 323, 449, 491, 886, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 335, 455, 1223
HpyF3I CTNAG 3 cut(s) 238, 933, 1016
HpySE526I ACGT 3 cut(s) 728, 759, 827
Hsp92I GRCGYC 1 cut(s) 728
Hsp92II CATG 3 cut(s) 611, 631, 1088
Kpn2I TCCGGA 1 cut(s) 709
Ksp22I TGATCA 1 cut(s) 1104
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 5 cut(s) 90, 699, 957, 1080, 1104
LmnI GCTCC 4 cut(s) 821, 914, 978, 1223
Lsp1109I GCAGC 3 cut(s) 232, 272, 401
LweI GCATC 8 cut(s) 67, 220, 232, 325, 478, 902, 1002, 1126
MaeI CTAG 2 cut(s) 177, 650
MaeII ACGT 3 cut(s) 728, 759, 827
MaeIII GTNAC 1 cut(s) 152
MalI GATC 5 cut(s) 92, 701, 959, 1082, 1106
MboI GATC 5 cut(s) 90, 699, 957, 1080, 1104
MboII GAAGA 3 cut(s) 86, 793, 1199
MflI RGATCY 2 cut(s) 699, 1080
MluCI AATT 9 cut(s) 38, 102, 201, 510, 538, 611, 835, 851, 1193
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 2 cut(s) 793, 892
Mph1103I ATGCAT 2 cut(s) 493, 895
MroI TCCGGA 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 635
MseI TTAA 4 cut(s) 221, 345, 756, 834
MslI CAYNNNNRTG 3 cut(s) 572, 1073, 1252
MspI CCGG 3 cut(s) 316, 710, 868
MspR9I CCNGG 3 cut(s) 317, 861, 881
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 2 cut(s) 861, 881
MwoI GCNNNNNNNGC 4 cut(s) 242, 335, 455, 1223
NciI CCSGG 1 cut(s) 317
NdeII GATC 5 cut(s) 90, 699, 957, 1080, 1104
NlaIII CATG 3 cut(s) 611, 631, 1088
NlaIV GGNNCC 1 cut(s) 916
NsiI ATGCAT 2 cut(s) 493, 895
PagI TCATGA 1 cut(s) 627
PceI AGGCCT 1 cut(s) 938
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PctI GAATGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 3 cut(s) 166, 359, 412
PkrI GCNGC 4 cut(s) 247, 262, 391, 858
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
Ppu21I YACGTR 1 cut(s) 828
PsiI TTATAA 1 cut(s) 593
Psp1406I AACGTT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 859, 879
PspGI CCWGG 2 cut(s) 859, 879
PspN4I GGNNCC 1 cut(s) 916
PspPI GGNCC 3 cut(s) 305, 506, 1091
PsrI GAACNNNNNNTAC 2 cut(s) 1103, 1135
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 699, 1080
RsaI GTAC 2 cut(s) 433, 454
RsaNI GTAC 2 cut(s) 432, 453
RseI CAYNNNNRTG 3 cut(s) 572, 1073, 1252
SaqAI TTAA 4 cut(s) 221, 345, 756, 834
SatI GCNGC 4 cut(s) 246, 261, 390, 857
Sau3AI GATC 5 cut(s) 90, 699, 957, 1080, 1104
Sau96I GGNCC 3 cut(s) 305, 506, 1091
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 3 cut(s) 317, 861, 881
SfaNI GCATC 8 cut(s) 67, 220, 232, 325, 478, 902, 1002, 1126
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 3 cut(s) 305, 506, 1091
SmiMI CAYNNNNRTG 3 cut(s) 572, 1073, 1252
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 9 cut(s) 38, 102, 201, 510, 538, 611, 835, 851, 1193
SseBI AGGCCT 1 cut(s) 938
SsiI CCGC 5 cut(s) 456, 483, 857, 1059, 1180
SspMI CTAG 2 cut(s) 177, 650
StuI AGGCCT 1 cut(s) 938
StyD4I CCNGG 3 cut(s) 315, 859, 879
StyI CCWWGG 2 cut(s) 722, 1173
TaaI ACNGT 2 cut(s) 11, 805
TaiI ACGT 3 cut(s) 731, 762, 830
TaqI TCGA 2 cut(s) 93, 896
TasI AATT 9 cut(s) 38, 102, 201, 510, 538, 611, 835, 851, 1193
TauI GCSGC 1 cut(s) 859
TfiI GAWTC 3 cut(s) 166, 359, 412
Tru1I TTAA 4 cut(s) 221, 345, 756, 834
Tru9I TTAA 4 cut(s) 221, 345, 756, 834
TscAI CASTG 4 cut(s) 255, 288, 682, 1129
TseI GCWGC 3 cut(s) 245, 260, 389
TspDTI ATGAA 6 cut(s) 17, 624, 644, 701, 1064, 1236
TspRI CASTG 4 cut(s) 255, 288, 682, 1129
VpaK11BI GGWCC 3 cut(s) 305, 506, 1091
XapI RAATTY 2 cut(s) 538, 611
XmnI GAANNNNTTC 1 cut(s) 635
XspI CTAG 2 cut(s) 177, 650
ZraI GACGTC 1 cut(s) 729
Zsp2I ATGCAT 2 cut(s) 493, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.