Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Forward (+)

37164018 .. 37168884

Gene Structure 4867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG294300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGAGCAACGTGCCTAAAGAAGCAATTGAGGTCGTAGCGCAGAGCATTGGCATTACCAATTTGTCTCCTGATGTTGCACTTGCTCTCACCCCAGATGTCGAGTACCGGGTTCGCGAGATCATGCAGGAGGCCATCAAATGCATGCGACACTCGAGACGGACTATTCTGACAACCGATGATGTGGATAGCGCACTTAAATTGAGAAATGTGGAGCCAATATATGGCTTTGGTTCTGGAGATCCTTTGAGGTTCAAGAGAGCTGCTGGACATAGGGATTTGTTCTACATAGATGACAAGGATGTTGAATTTAAAGATGTGATTGAGGCACCTTTGCCAAAAGCACCATTTGATGTGTCAGTTACTGCTCACTGGCTGGCAATCGAAGGTGTTCAACCTGCAATTCCAGAAAATGCTCCAGTTGAAGCACTTGCTGTATACTCTGATGTCAAAAAATCTGAATACAAGGAAGACGGACTTCCTGTAGATGTTAAATTGCCCGTTAAGCATGTACTATCAAAGGAACTTCAGCTTTACTTTGAGAAGATTACAGGGCTTACTCAAAGGTCTACCTCAATCCTTTTTAAAGAAGCATTAGTGAGCTTGGCAACAGATTCAGGGCTCCATCCATTGGTTCCTTACTTTACATGTTTCGTTGCTGATGAGGTTACACGCAATTTGAATAATTTTCTCCTCCTATTTGCTTTAATGCGTCTTGTCCGGAGCCTTCTTCAAAATCCTCACATACATGTTGAACCTTATCTACACCAATTGATGCCTTCTGTTATTACCTGCCTTGTTGCAAAAAGACTAGGGAATAGATATACTGACAATCACTGGGAACTTAGAAACTTTACTGCGAACCTGGTTTCTTCAATTTGCAAAAGATTTGGACATGTTTATCACAATCTTCAGCCACGTTTGACAAGGACTTTGCTTCATGCTTTCTTGGACCCAACCAAAGCATTACCCCAACATTATGGTGCAATTCAAGGGCTGGCAGCTCTTGGTCCCAATGTGGTTCGCTTACTTATACTACCAAATCTCGATTCGTACATGCAACTTCTTGAACCAGAAATGATACTTGAGAAGCAAAAAAATGAGATAAAGAGGCATGAAGCTTGGCGTGTCTATGGGGCCTTGCTGCGTGCGGCTGGCCAATGCATGCATGACCGGCTCAAGACGTTCCACAGTTTGCTGTCTCCTCCAGTTCATCCTGTTTGGAAGAGCAATGGAAAGATTGCAACAACAATGACAAATAAACGCAAAGCAAGCACCGACAACTTGATGCTGCAACCACCACTCAAAAAATTAGCTCATGATGGCATGGTTGGAGCATTACCAATGAACTCCATGCAAGTTGACATGCAAGGGGCAGCGGGCGGATTTTCCTCATCTGTTGGGAGCTTGAATGTTGGTGTATCATCGATGTCCCACCAGTTACCAAAGGAACAAATGTCAGGAAGGGATGTCAGTGGCCAACTGGTAAAGGGGTCTACTGGTCTTGCTCAGGCATGGAAAGAAGAGACCGATGTTGGGCATGTAGTCGCATCTTTGTTTGAACATTTTGGTGAAAGTGTACTCCCCTCTACTCCCAAATCAGAGTTATTTTTTTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

539

Amino Acids

60.08

Weight (kDa)

8.14

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF	PF02969	1 - 66	6.2e-30	TATA box binding protein associated factor (TAF)
TAF6_C	PF07571	167 - 348	7.2e-75	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	403, 797
AccB1I	GGYRCC	1 cut(s)	325
AccB7I	CCANNNNNTGG	2 cut(s)	221, 628
AccI	GTMKAC	3 cut(s)	435, 566, 1493
AccII	CGCG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	717
AciI	CCGC	3 cut(s)	1148, 1376, 1380
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	2 cut(s)	1153, 1474
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	2 cut(s)	509, 893
AfaI	GTAC	4 cut(s)	104, 510, 1052, 1578
AfiI	CCNNNNNNNGG	3 cut(s)	221, 628, 1533
AflIII	ACRYGT	3 cut(s)	644, 745, 892
AjnI	CCWGG	1 cut(s)	861
AjuI	GAANNNNNNNTTGG	2 cut(s)	1030, 1062
AluBI	AGCT	7 cut(s)	260, 529, 600, 1001, 1118, 1313, 1404
AluI	AGCT	7 cut(s)	260, 529, 600, 1001, 1118, 1313, 1404
Alw26I	GTCTC	4 cut(s)	69, 148, 1203, 1517
AlwI	GGATC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	717
AoxI	GGCC	4 cut(s)	129, 1134, 1153, 1474
ApeKI	GCWGC	5 cut(s)	260, 998, 1141, 1288, 1373
ApoI	RAATTY	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	913, 945
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	40, 191
AspS9I	GGNCC	3 cut(s)	949, 1007, 1134
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	79, 1580
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	949, 1007
BalI	TGGCCA	2 cut(s)	1155, 1476
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	5 cut(s)	247, 1010, 1128, 1275, 1385
BccI	CCATC	3 cut(s)	140, 630, 1313
BciT130I	CCWGG	1 cut(s)	863
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	4 cut(s)	69, 148, 1203, 1517
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	2 cut(s)	403, 797
BisI	GCNGC	6 cut(s)	261, 999, 1142, 1149, 1289, 1374
BlsI	GCNGC	6 cut(s)	262, 1000, 1143, 1150, 1290, 1375
Bme1390I	CCNGG	2 cut(s)	107, 863
Bme18I	GGWCC	2 cut(s)	949, 1007
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	949, 1007, 1134
BmiI	GGNNCC	8 cut(s)	213, 327, 620, 633, 722, 951, 1009, 1135
BmrFI	CCNGG	2 cut(s)	107, 863
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	3 cut(s)	762, 1275, 1556
BmuI	ACTGGG	1 cut(s)	844
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	3 cut(s)	255, 399, 1188
Bpu10I	CCTNAGC	1 cut(s)	1506
BpuEI	CTTGAG	2 cut(s)	1103, 1160
BpuMI	CCSGG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	1424
BsaI	GGTCTC	1 cut(s)	1517
BsaWI	WCCGGW	1 cut(s)	717
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 628, 1533
Bse118I	RCCGGY	1 cut(s)	1170
Bse1I	ACTGG	7 cut(s)	374, 416, 839, 1205, 1435, 1485, 1501
Bse3DI	GCAATG	1 cut(s)	1234
BseAI	TCCGGA	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	863
BseCI	ATCGAT	1 cut(s)	1424
BseGI	GGATG	4 cut(s)	304, 622, 1210, 1471
BseLI	CCNNNNNNNGG	3 cut(s)	221, 628, 1533
BseMI	GCAATG	1 cut(s)	1234
BseMII	CTCAG	1 cut(s)	1520
BseNI	ACTGG	7 cut(s)	374, 416, 839, 1205, 1435, 1485, 1501
BseRI	GAGGAG	2 cut(s)	680, 1191
BseXI	GCAGC	5 cut(s)	247, 1010, 1128, 1275, 1385
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	131, 1136, 1155, 1476
BshNI	GGYRCC	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	1424
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	106, 718, 1171
BslFI	GGGAC	2 cut(s)	993, 1414
BslI	CCNNNNNNNGG	3 cut(s)	221, 628, 1533
BsmAI	GTCTC	4 cut(s)	69, 148, 1203, 1517
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	993, 1414
BsnI	GGCC	4 cut(s)	131, 1136, 1155, 1476
Bso31I	GGTCTC	1 cut(s)	1517
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp13I	TCCGGA	1 cut(s)	717
Bsp143I	GATC	2 cut(s)	117, 238
Bsp68I	TCGCGA	1 cut(s)	114
BspACI	CCGC	3 cut(s)	1148, 1376, 1380
BspANI	GGCC	4 cut(s)	131, 1136, 1155, 1476
BspCNI	CTCAG	1 cut(s)	1519
BspDI	ATCGAT	1 cut(s)	1424
BspEI	TCCGGA	1 cut(s)	717
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	1315
BspLI	GGNNCC	8 cut(s)	213, 327, 620, 633, 722, 951, 1009, 1135
BspMI	ACCTGC	2 cut(s)	403, 797
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	1217
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	1517
BsrDI	GCAATG	1 cut(s)	1234
BsrFI	RCCGGY	1 cut(s)	1170
BsrI	ACTGG	7 cut(s)	374, 416, 839, 1205, 1435, 1485, 1501
BssAI	RCCGGY	1 cut(s)	1170
BssMI	GATC	2 cut(s)	117, 238
BssNAI	GTATAC	1 cut(s)	436
Bst1107I	GTATAC	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	1 cut(s)	1190
Bst6I	CTCTTC	2 cut(s)	1217, 1515
BstC8I	GCNNGC	8 cut(s)	143, 375, 996, 1146, 1153, 1163, 1270, 1378
BstDEI	CTNAG	2 cut(s)	842, 1506
BstF5I	GGATG	4 cut(s)	304, 622, 1210, 1471
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	40, 191
BstKTI	GATC	2 cut(s)	120, 241
BstMAI	GTCTC	4 cut(s)	69, 148, 1203, 1517
BstMBI	GATC	2 cut(s)	117, 238
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 1171, 1269
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	9 cut(s)	145, 509, 648, 749, 896, 1057, 1165, 1366, 1541
BstSCI	CCNGG	2 cut(s)	105, 861
BstSFI	CTRYAG	1 cut(s)	480
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	247, 1010, 1128, 1275, 1385
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	977
BstYI	RGATCY	1 cut(s)	238
BstZ17I	GTATAC	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	1424
BsuRI	GGCC	4 cut(s)	131, 1136, 1155, 1476
BsuTUI	ATCGAT	1 cut(s)	1424
BtsCI	GGATG	4 cut(s)	304, 622, 1210, 1471
BtsIMutI	CAGTG	3 cut(s)	367, 832, 1477
BtuMI	TCGCGA	1 cut(s)	114
BveI	ACCTGC	2 cut(s)	403, 797
Cac8I	GCNNGC	8 cut(s)	143, 375, 996, 1146, 1153, 1163, 1270, 1378
CaiI	CAGNNNCTG	1 cut(s)	362
CciI	TCATGA	1 cut(s)	1315
CfoI	GCGC	2 cut(s)	40, 191
Cfr10I	RCCGGY	1 cut(s)	1170
Cfr13I	GGNCC	3 cut(s)	949, 1007, 1134
ClaI	ATCGAT	1 cut(s)	1424
CseI	GACGC	1 cut(s)	698
CsiI	ACCWGGT	1 cut(s)	861
Csp6I	GTAC	4 cut(s)	103, 509, 1051, 1577
CviQI	GTAC	4 cut(s)	103, 509, 1051, 1577
DdeI	CTNAG	2 cut(s)	842, 1506
DpnI	GATC	2 cut(s)	119, 240
DpnII	GATC	2 cut(s)	117, 238
DraI	TTTAAA	2 cut(s)	310, 583
EaeI	YGGCCR	2 cut(s)	1153, 1474
Eam1104I	CTCTTC	2 cut(s)	1217, 1515
EarI	CTCTTC	2 cut(s)	1217, 1515
EciI	GGCGGA	1 cut(s)	1395
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	1517
Eco47I	GGWCC	2 cut(s)	949, 1007
Eco57I	CTGAAG	2 cut(s)	509, 893
Eco88I	CYCGRG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	1134
EcoRII	CCWGG	1 cut(s)	861
EcoT22I	ATGCAT	3 cut(s)	143, 1163, 1167
EcoT38I	GRGCYC	1 cut(s)	621
Esp3I	CGTCTC	1 cut(s)	148
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	2 cut(s)	993, 1414
FauI	CCCGC	1 cut(s)	1369
FblI	GTMKAC	3 cut(s)	435, 566, 1493
Fnu4HI	GCNGC	6 cut(s)	261, 999, 1142, 1149, 1289, 1374
FokI	GGATG	4 cut(s)	311, 609, 1197, 1478
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	6 cut(s)	261, 999, 1142, 1149, 1289, 1374
FspBI	CTAG	1 cut(s)	809
GlaI	GCGC	2 cut(s)	39, 190
GluI	GCNGC	6 cut(s)	261, 999, 1142, 1149, 1289, 1374
GsuI	CTGGAG	3 cut(s)	255, 399, 1188
HaeIII	GGCC	4 cut(s)	131, 1136, 1155, 1476
HapII	CCGG	3 cut(s)	106, 718, 1171
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	2 cut(s)	40, 191
Hin6I	GCGC	2 cut(s)	38, 189
HinP1I	GCGC	2 cut(s)	38, 189
HincII	GTYRAC	1 cut(s)	1360
HindII	GTYRAC	1 cut(s)	1360
HindIII	AAGCTT	1 cut(s)	1116
HinfI	GANTC	2 cut(s)	611, 1046
HpaII	CCGG	3 cut(s)	106, 718, 1171
HphI	GGTGA	2 cut(s)	79, 1580
Hpy166II	GTNNAC	5 cut(s)	436, 567, 1360, 1494, 1577
Hpy188I	TCNGA	4 cut(s)	168, 442, 457, 1600
Hpy8I	GTNNAC	5 cut(s)	436, 567, 1360, 1494, 1577
HpyAV	CCTTC	4 cut(s)	377, 734, 786, 1455
HpyCH4III	ACNGT	1 cut(s)	1190
HpyCH4IV	ACGT	3 cut(s)	9, 916, 1181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 1171, 1269
HpyF3I	CTNAG	2 cut(s)	842, 1506
HpySE526I	ACGT	3 cut(s)	9, 916, 1181
HspAI	GCGC	2 cut(s)	38, 189
Kpn2I	TCCGGA	1 cut(s)	717
Kzo9I	GATC	2 cut(s)	117, 238
LguI	GCTCTTC	1 cut(s)	1217
LmnI	GCTCC	6 cut(s)	211, 418, 624, 720, 1331, 1401
Lsp1109I	GCAGC	5 cut(s)	247, 1010, 1128, 1275, 1385
LweI	GCATC	3 cut(s)	762, 1275, 1556
MabI	ACCWGGT	1 cut(s)	861
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	3 cut(s)	9, 916, 1181
MaeIII	GTNAC	3 cut(s)	358, 664, 1437
MalI	GATC	2 cut(s)	119, 240
MboI	GATC	2 cut(s)	117, 238
MboII	GAAGA	7 cut(s)	479, 553, 719, 861, 899, 1234, 1532
MfeI	CAATTG	2 cut(s)	24, 767
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	621
MlsI	TGGCCA	2 cut(s)	1155, 1476
MluNI	TGGCCA	2 cut(s)	1155, 1476
MmeI	TCCRAC	1 cut(s)	1309
Mox20I	TGGCCA	2 cut(s)	1155, 1476
Mph1103I	ATGCAT	3 cut(s)	143, 1163, 1167
MroI	TCCGGA	1 cut(s)	717
MroXI	GAANNNNTTC	1 cut(s)	387
MscI	TGGCCA	2 cut(s)	1155, 1476
MseI	TTAA	6 cut(s)	195, 309, 489, 501, 582, 704
MslI	CAYNNNNRTG	3 cut(s)	744, 978, 1566
Msp20I	TGGCCA	2 cut(s)	1155, 1476
MspA1I	CMGCKG	1 cut(s)	1376
MspI	CCGG	3 cut(s)	106, 718, 1171
MspR9I	CCNGG	2 cut(s)	107, 863
MunI	CAATTG	2 cut(s)	24, 767
MvaI	CCWGG	1 cut(s)	863
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	502, 1171, 1269
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	117, 238
NlaIV	GGNNCC	8 cut(s)	213, 327, 620, 633, 722, 951, 1009, 1135
NruI	TCGCGA	1 cut(s)	114
NsiI	ATGCAT	3 cut(s)	143, 1163, 1167
NspI	RCATGY	9 cut(s)	145, 509, 648, 749, 896, 1057, 1165, 1366, 1541
PaeI	GCATGC	2 cut(s)	145, 1165
PaeR7I	CTCGAG	1 cut(s)	151
PagI	TCATGA	1 cut(s)	1315
PciI	ACATGT	3 cut(s)	644, 745, 892
PciSI	GCTCTTC	1 cut(s)	1217
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	611, 1046
PflMI	CCANNNNNTGG	2 cut(s)	221, 628
PkrI	GCNGC	6 cut(s)	262, 1000, 1143, 1150, 1290, 1375
PscI	ACATGT	3 cut(s)	644, 745, 892
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	8 cut(s)	213, 327, 620, 633, 722, 951, 1009, 1135
PspPI	GGNCC	3 cut(s)	949, 1007, 1134
PsrI	GAACNNNNNNTAC	2 cut(s)	744, 776
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	238
RruI	TCGCGA	1 cut(s)	114
RsaI	GTAC	4 cut(s)	104, 510, 1052, 1578
RsaNI	GTAC	4 cut(s)	103, 509, 1051, 1577
RseI	CAYNNNNRTG	3 cut(s)	744, 978, 1566
SapI	GCTCTTC	1 cut(s)	1217
SaqAI	TTAA	6 cut(s)	195, 309, 489, 501, 582, 704
SatI	GCNGC	6 cut(s)	261, 999, 1142, 1149, 1289, 1374
Sau3AI	GATC	2 cut(s)	117, 238
Sau96I	GGNCC	3 cut(s)	949, 1007, 1134
ScrFI	CCNGG	2 cut(s)	107, 863
SduI	GDGCHC	1 cut(s)	621
SexAI	ACCWGGT	1 cut(s)	861
SfaNI	GCATC	3 cut(s)	762, 1275, 1556
SfcI	CTRYAG	1 cut(s)	480
Sfr274I	CTCGAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	949, 1007
SlaI	CTCGAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	3 cut(s)	744, 978, 1566
SmlI	CTYRAG	3 cut(s)	151, 1082, 1175
SmoI	CTYRAG	3 cut(s)	151, 1082, 1175
SphI	GCATGC	2 cut(s)	145, 1165
SsiI	CCGC	3 cut(s)	1148, 1376, 1380
SspMI	CTAG	1 cut(s)	809
StyD4I	CCNGG	2 cut(s)	105, 861
TaaI	ACNGT	1 cut(s)	1190
TaiI	ACGT	3 cut(s)	12, 919, 1184
TaqI	TCGA	5 cut(s)	99, 152, 381, 1044, 1424
TaqII	GACCGA	1 cut(s)	1541
TatI	WGTACW	2 cut(s)	508, 1576
TauI	GCSGC	1 cut(s)	1151
TfiI	GAWTC	2 cut(s)	611, 1046
Tru1I	TTAA	6 cut(s)	195, 309, 489, 501, 582, 704
Tru9I	TTAA	6 cut(s)	195, 309, 489, 501, 582, 704
TscAI	CASTG	3 cut(s)	374, 839, 1477
TseI	GCWGC	5 cut(s)	260, 998, 1141, 1288, 1373
TspDTI	ATGAA	4 cut(s)	926, 1128, 1199, 1358
TspGWI	ACGGA	2 cut(s)	172, 486
TspRI	CASTG	3 cut(s)	374, 839, 1477
Van91I	CCANNNNNTGG	2 cut(s)	221, 628
VpaK11BI	GGWCC	2 cut(s)	949, 1007
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	9 cut(s)	145, 509, 648, 749, 896, 1057, 1165, 1366, 1541
XhoI	CTCGAG	1 cut(s)	151
XmiI	GTMKAC	3 cut(s)	435, 566, 1493
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	1 cut(s)	809
Zsp2I	ATGCAT	3 cut(s)	143, 1163, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.