Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

36722469 .. 36723632

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG288600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTGCACTTGCTCTCACCCCAGATATCGAGTACCGGATTCGCGAGATCATGCAGATTTAGACATTTTTGTCATAATCTTCAGCCACGTTTGACAAGGACTTTGCTTCACGCTTTCTTGGACCCAACCAAAGCATTACCCCAACATTATGGCGCAATTCAAGGGCTAGCAGCTCTTGGTCCCAATGTGGTTTGCTTACTTATACTACCAAATCTCGATTCGTATATGCAACTTCTTGAGCCAGAAATGATACTTGAGAAGCAAAAGAATGAGATAAAGAGGCATGAAGCTTGGCGTGTCTATGGGGCCTTTGCTGTGTGCGGCTGGCCAATGCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

113

Amino Acids

12.89

Weight (kDa)

9.1

Isoelectric Point (pI)

64.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF6_C	PF07571	19 - 72	3.7e-16	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	69
AccII	CGCG	1 cut(s)	44
AciI	CCGC	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	2 cut(s)	173, 290
AluI	AGCT	2 cut(s)	173, 290
AoxI	GGCC	2 cut(s)	306, 326
ApeKI	GCWGC	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	121, 179, 306
AsuHPI	GGTGA	1 cut(s)	9
AsuNHI	GCTAGC	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	121, 179
BalI	TGGCCA	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	171, 322
BlsI	GCNGC	2 cut(s)	172, 323
Bme18I	GGWCC	2 cut(s)	121, 179
BmgT120I	GGNCC	3 cut(s)	121, 179, 306
BmiI	GGNNCC	3 cut(s)	123, 181, 307
BmtI	GCTAGC	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	257, 275
BsaWI	WCCGGW	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	308, 328
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	2 cut(s)	308, 328
Bsp143I	GATC	1 cut(s)	47
Bsp68I	TCGCGA	1 cut(s)	44
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	2 cut(s)	308, 328
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	123, 181, 307
BspOI	GCTAGC	1 cut(s)	170
BssMI	GATC	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	168, 326, 336
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	338
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	308, 328
BtuMI	TCGCGA	1 cut(s)	44
Cac8I	GCNNGC	3 cut(s)	168, 326, 336
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	3 cut(s)	121, 179, 306
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	4 cut(s)	51, 284, 335, 339
CviJI	RGCY	8 cut(s)	85, 166, 173, 241, 290, 308, 324, 328
CviKI_1	RGCY	8 cut(s)	85, 166, 173, 241, 290, 308, 324, 328
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
DrdI	GACNNNNNNGTC	1 cut(s)	69
DseDI	GACNNNNNNGTC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	121, 179
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRV	GATATC	1 cut(s)	27
EcoT22I	ATGCAT	2 cut(s)	336, 340
FaeI	CATG	4 cut(s)	54, 287, 338, 342
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	4 cut(s)	50, 283, 334, 338
Fnu4HI	GCNGC	2 cut(s)	171, 322
Fsp4HI	GCNGC	2 cut(s)	171, 322
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	171, 322
HaeIII	GGCC	2 cut(s)	308, 328
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	54, 287, 338, 342
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	39, 218
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	9
Hpy188III	TCNNGA	3 cut(s)	43, 215, 236
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	7, 54, 229, 334, 338
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	4 cut(s)	54, 287, 338, 342
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	47
LpnPI	CCDG	4 cut(s)	35, 49, 255, 310
Lsp1109I	GCAGC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	88
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	328
MluCI	AATT	1 cut(s)	156
MluNI	TGGCCA	1 cut(s)	328
MnlI	CCTC	1 cut(s)	273
Mox20I	TGGCCA	1 cut(s)	328
Mph1103I	ATGCAT	2 cut(s)	336, 340
MscI	TGGCCA	1 cut(s)	328
Msp20I	TGGCCA	1 cut(s)	328
MspI	CCGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	44
NdeII	GATC	1 cut(s)	47
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	4 cut(s)	54, 287, 338, 342
NlaIV	GGNNCC	3 cut(s)	123, 181, 307
NruI	TCGCGA	1 cut(s)	44
NsiI	ATGCAT	2 cut(s)	336, 340
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	39, 218
PkrI	GCNGC	2 cut(s)	172, 323
PspN4I	GGNNCC	3 cut(s)	123, 181, 307
PspPI	GGNCC	3 cut(s)	121, 179, 306
RruI	TCGCGA	1 cut(s)	44
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SatI	GCNGC	2 cut(s)	171, 322
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	3 cut(s)	121, 179, 306
SetI	ASST	3 cut(s)	91, 175, 292
SinI	GGWCC	2 cut(s)	121, 179
SmlI	CTYRAG	2 cut(s)	236, 254
SmoI	CTYRAG	2 cut(s)	236, 254
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	29, 216
TasI	AATT	1 cut(s)	156
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	2 cut(s)	39, 218
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	121, 179
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	2 cut(s)	336, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.