Transcription initiation factor TFIID subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 462 |
| AatII | GACGTC | 1 cut(s) | 198 |
| Acc36I | ACCTGC | 1 cut(s) | 502 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 320 |
| AccII | CGCG | 1 cut(s) | 59 |
| AccIII | TCCGGA | 1 cut(s) | 1711 |
| AciI | CCGC | 2 cut(s) | 72, 1250 |
| AclI | AACGTT | 1 cut(s) | 1292 |
| AclWI | GGATC | 1 cut(s) | 158 |
| AcsI | RAATTY | 2 cut(s) | 51, 1642 |
| AcuI | CTGAAG | 4 cut(s) | 608, 1298, 1424, 1479 |
| AcyI | GRCGYC | 1 cut(s) | 195 |
| AfaI | GTAC | 2 cut(s) | 525, 1308 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 320, 542, 1621 |
| AgeI | ACCGGT | 1 cut(s) | 595 |
| AgsI | TTSAA | 9 cut(s) | 128, 352, 409, 491, 854, 975, 1091, 1557, 1642 |
| AleI | CACNNNNGTG | 1 cut(s) | 1080 |
| Alw21I | GWGCWC | 2 cut(s) | 292, 1383 |
| Alw26I | GTCTC | 3 cut(s) | 168, 942, 1599 |
| Alw44I | GTGCAC | 1 cut(s) | 288 |
| AlwI | GGATC | 1 cut(s) | 158 |
| Ama87I | CYCGRG | 1 cut(s) | 250 |
| Aor13HI | TCCGGA | 1 cut(s) | 1711 |
| AoxI | GGCC | 4 cut(s) | 337, 1109, 1423, 1513 |
| ApaI | GGGCCC | 1 cut(s) | 1113 |
| ApaLI | GTGCAC | 1 cut(s) | 288 |
| ApeKI | GCWGC | 4 cut(s) | 69, 1100, 1177, 1481 |
| ApoI | RAATTY | 2 cut(s) | 51, 1642 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1133, 1165 |
| AsiGI | ACCGGT | 1 cut(s) | 595 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 486, 1283, 1689 |
| AspS9I | GGNCC | 7 cut(s) | 338, 666, 1051, 1109, 1110, 1424, 1514 |
| AsuHPI | GGTGA | 4 cut(s) | 88, 1446, 1511, 1694 |
| AsuNHI | GCTAGC | 1 cut(s) | 472 |
| AvaI | CYCGRG | 1 cut(s) | 250 |
| AvaII | GGWCC | 2 cut(s) | 666, 1051 |
| BaeGI | GKGCMC | 3 cut(s) | 114, 292, 1113 |
| BanII | GRGCYC | 2 cut(s) | 1113, 1383 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 414, 446 |
| BauI | CACGAG | 1 cut(s) | 771 |
| BbsI | GAAGAC | 2 cut(s) | 1331, 1692 |
| Bbv12I | GWGCWC | 2 cut(s) | 292, 1383 |
| BbvI | GCAGC | 4 cut(s) | 56, 1087, 1164, 1493 |
| BccI | CCATC | 8 cut(s) | 278, 536, 563, 886, 1306, 1415, 1465, 1571 |
| BceAI | ACGGC | 1 cut(s) | 972 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 75, 109 |
| BcoDI | GTCTC | 3 cut(s) | 168, 942, 1599 |
| BfaI | CTAG | 4 cut(s) | 473, 615, 1106, 1530 |
| BfmI | CTRYAG | 3 cut(s) | 516, 882, 1730 |
| BfuAI | ACCTGC | 1 cut(s) | 502 |
| BglII | AGATCT | 1 cut(s) | 1281 |
| BisI | GCNGC | 5 cut(s) | 70, 1101, 1178, 1251, 1482 |
| BlsI | GCNGC | 5 cut(s) | 71, 1102, 1179, 1252, 1483 |
| BmcAI | AGTACT | 1 cut(s) | 525 |
| Bme18I | GGWCC | 2 cut(s) | 666, 1051 |
| BmeT110I | CYCGRG | 1 cut(s) | 250 |
| BmgT120I | GGNCC | 7 cut(s) | 338, 666, 1051, 1109, 1110, 1424, 1514 |
| BmiI | GGNNCC | 6 cut(s) | 340, 1053, 1111, 1170, 1237, 1516 |
| BmrI | ACTGGG | 1 cut(s) | 1107 |
| BmsI | GCATC | 3 cut(s) | 798, 864, 1576 |
| BmtI | GCTAGC | 1 cut(s) | 476 |
| BmuI | ACTGGG | 1 cut(s) | 1107 |
| BpiI | GAAGAC | 2 cut(s) | 1331, 1692 |
| BpmI | CTGGAG | 6 cut(s) | 150, 354, 815, 995, 1166, 1470 |
| BpuEI | CTTGAG | 1 cut(s) | 1205 |
| BsaHI | GRCGYC | 1 cut(s) | 195 |
| BsaWI | WCCGGW | 2 cut(s) | 595, 1711 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1468, 1498 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 320, 542, 1621 |
| Bse118I | RCCGGY | 1 cut(s) | 595 |
| Bse1I | ACTGG | 6 cut(s) | 457, 473, 1012, 1113, 1435, 1662 |
| Bse3DI | GCAATG | 1 cut(s) | 1265 |
| BseAI | TCCGGA | 1 cut(s) | 1711 |
| BseGI | GGATG | 4 cut(s) | 10, 403, 571, 724 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 320, 542, 1621 |
| BseMI | GCAATG | 1 cut(s) | 1265 |
| BseMII | CTCAG | 2 cut(s) | 639, 1604 |
| BseNI | ACTGG | 6 cut(s) | 457, 473, 1012, 1113, 1435, 1662 |
| BseRI | GAGGAG | 2 cut(s) | 268, 1604 |
| BseSI | GKGCMC | 3 cut(s) | 114, 292, 1113 |
| BseXI | GCAGC | 4 cut(s) | 56, 1087, 1164, 1493 |
| Bsh1236I | CGCG | 1 cut(s) | 59 |
| BshFI | GGCC | 4 cut(s) | 339, 1111, 1425, 1515 |
| BshTI | ACCGGT | 1 cut(s) | 595 |
| BsiHKAI | GWGCWC | 2 cut(s) | 292, 1383 |
| BsiHKCI | CYCGRG | 1 cut(s) | 250 |
| BsiSI | CCGG | 2 cut(s) | 596, 1712 |
| BslFI | GGGAC | 1 cut(s) | 732 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 320, 542, 1621 |
| BsmAI | GTCTC | 3 cut(s) | 168, 942, 1599 |
| BsmFI | GGGAC | 1 cut(s) | 732 |
| BsnI | GGCC | 4 cut(s) | 339, 1111, 1425, 1515 |
| BsoBI | CYCGRG | 1 cut(s) | 250 |
| Bsp120I | GGGCCC | 1 cut(s) | 1109 |
| Bsp1286I | GDGCHC | 4 cut(s) | 114, 292, 1113, 1383 |
| Bsp13I | TCCGGA | 1 cut(s) | 1711 |
| Bsp143I | GATC | 4 cut(s) | 150, 216, 417, 1281 |
| BspACI | CCGC | 2 cut(s) | 72, 1250 |
| BspANI | GGCC | 4 cut(s) | 339, 1111, 1425, 1515 |
| BspCNI | CTCAG | 2 cut(s) | 640, 1603 |
| BspEI | TCCGGA | 1 cut(s) | 1711 |
| BspFNI | CGCG | 1 cut(s) | 59 |
| BspLI | GGNNCC | 6 cut(s) | 340, 1053, 1111, 1170, 1237, 1516 |
| BspMI | ACCTGC | 1 cut(s) | 502 |
| BspOI | GCTAGC | 1 cut(s) | 476 |
| BspPI | GGATC | 1 cut(s) | 158 |
| BsrDI | GCAATG | 1 cut(s) | 1265 |
| BsrFI | RCCGGY | 1 cut(s) | 595 |
| BsrI | ACTGG | 6 cut(s) | 457, 473, 1012, 1113, 1435, 1662 |
| BssAI | RCCGGY | 1 cut(s) | 595 |
| BssMI | GATC | 4 cut(s) | 150, 216, 417, 1281 |
| BssNI | GRCGYC | 1 cut(s) | 195 |
| BssSI | CACGAG | 1 cut(s) | 771 |
| Bst2BI | CACGAG | 1 cut(s) | 771 |
| Bst4CI | ACNGT | 1 cut(s) | 1082 |
| Bst6I | CTCTTC | 1 cut(s) | 1361 |
| BstACI | GRCGYC | 1 cut(s) | 195 |
| BstC8I | GCNNGC | 1 cut(s) | 474 |
| BstDEI | CTNAG | 3 cut(s) | 648, 944, 1590 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1619 |
| BstF5I | GGATG | 4 cut(s) | 10, 403, 571, 724 |
| BstFNI | CGCG | 1 cut(s) | 59 |
| BstKTI | GATC | 4 cut(s) | 153, 219, 420, 1284 |
| BstMAI | GTCTC | 3 cut(s) | 168, 942, 1599 |
| BstMBI | GATC | 4 cut(s) | 150, 216, 417, 1281 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1487 |
| BstNSI | RCATGY | 3 cut(s) | 608, 750, 998 |
| BstSFI | CTRYAG | 3 cut(s) | 516, 882, 1730 |
| BstSLI | GKGCMC | 3 cut(s) | 114, 292, 1113 |
| BstUI | CGCG | 1 cut(s) | 59 |
| BstV1I | GCAGC | 4 cut(s) | 56, 1087, 1164, 1493 |
| BstV2I | GAAGAC | 2 cut(s) | 1331, 1692 |
| BstX2I | RGATCY | 1 cut(s) | 1281 |
| BstYI | RGATCY | 1 cut(s) | 1281 |
| BsuRI | GGCC | 4 cut(s) | 339, 1111, 1425, 1515 |
| BtsCI | GGATG | 4 cut(s) | 10, 403, 571, 724 |
| BtsIMutI | CAGTG | 3 cut(s) | 466, 645, 1120 |
| BveI | ACCTGC | 1 cut(s) | 502 |
| Cac8I | GCNNGC | 1 cut(s) | 474 |
| Cfr10I | RCCGGY | 1 cut(s) | 595 |
| Cfr13I | GGNCC | 7 cut(s) | 338, 666, 1051, 1109, 1110, 1424, 1514 |
| CseI | GACGC | 1 cut(s) | 233 |
| Csp6I | GTAC | 2 cut(s) | 524, 1307 |
| CspAI | ACCGGT | 1 cut(s) | 595 |
| CviAII | CATG | 6 cut(s) | 220, 605, 747, 995, 1214, 1384 |
| CviQI | GTAC | 2 cut(s) | 524, 1307 |
| DdeI | CTNAG | 3 cut(s) | 648, 944, 1590 |
| DpnI | GATC | 4 cut(s) | 152, 218, 419, 1283 |
| DpnII | GATC | 4 cut(s) | 150, 216, 417, 1281 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 462 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 1 cut(s) | 1361 |
| EarI | CTCTTC | 1 cut(s) | 1361 |
| Ecl136II | GAGCTC | 1 cut(s) | 1381 |
| Eco24I | GRGCYC | 2 cut(s) | 1113, 1383 |
| Eco32I | GATATC | 1 cut(s) | 1504 |
| Eco47I | GGWCC | 2 cut(s) | 666, 1051 |
| Eco53kI | GAGCTC | 1 cut(s) | 1381 |
| Eco57I | CTGAAG | 4 cut(s) | 608, 1298, 1424, 1479 |
| Eco88I | CYCGRG | 1 cut(s) | 250 |
| EcoICRI | GAGCTC | 1 cut(s) | 1381 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1619 |
| EcoO109I | RGGNCCY | 3 cut(s) | 338, 1109, 1514 |
| EcoRI | GAATTC | 1 cut(s) | 1642 |
| EcoRV | GATATC | 1 cut(s) | 1504 |
| EcoT22I | ATGCAT | 2 cut(s) | 1045, 1265 |
| EcoT38I | GRGCYC | 2 cut(s) | 1113, 1383 |
| FaeI | CATG | 6 cut(s) | 223, 608, 750, 998, 1217, 1387 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 429, 461 |
| FaqI | GGGAC | 1 cut(s) | 732 |
| FatI | CATG | 6 cut(s) | 219, 604, 746, 994, 1213, 1383 |
| FauI | CCCGC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 5 cut(s) | 70, 1101, 1178, 1251, 1482 |
| FokI | GGATG | 4 cut(s) | 17, 410, 578, 711 |
| FriOI | GRGCYC | 2 cut(s) | 1113, 1383 |
| Fsp4HI | GCNGC | 5 cut(s) | 70, 1101, 1178, 1251, 1482 |
| FspBI | CTAG | 4 cut(s) | 473, 615, 1106, 1530 |
| GluI | GCNGC | 5 cut(s) | 70, 1101, 1178, 1251, 1482 |
| GsuI | CTGGAG | 6 cut(s) | 150, 354, 815, 995, 1166, 1470 |
| HaeIII | GGCC | 4 cut(s) | 339, 1111, 1425, 1515 |
| HapII | CCGG | 2 cut(s) | 596, 1712 |
| HgaI | GACGC | 1 cut(s) | 233 |
| Hin1I | GRCGYC | 1 cut(s) | 195 |
| Hin1II | CATG | 6 cut(s) | 223, 608, 750, 998, 1217, 1387 |
| HindIII | AAGCTT | 2 cut(s) | 90, 1218 |
| HinfI | GANTC | 4 cut(s) | 713, 961, 1069, 1148 |
| HpaII | CCGG | 2 cut(s) | 596, 1712 |
| HphI | GGTGA | 4 cut(s) | 88, 1446, 1511, 1694 |
| Hpy166II | GTNNAC | 2 cut(s) | 290, 1231 |
| Hpy188I | TCNGA | 4 cut(s) | 541, 670, 807, 1131 |
| Hpy8I | GTNNAC | 2 cut(s) | 290, 1231 |
| Hpy99I | CGWCG | 1 cut(s) | 200 |
| HpyAV | CCTTC | 6 cut(s) | 476, 546, 836, 1136, 1624, 1708 |
| HpyCH4III | ACNGT | 1 cut(s) | 1082 |
| HpyCH4IV | ACGT | 2 cut(s) | 195, 1292 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1487 |
| HpyF3I | CTNAG | 3 cut(s) | 648, 944, 1590 |
| HpySE526I | ACGT | 2 cut(s) | 195, 1292 |
| Hsp92I | GRCGYC | 1 cut(s) | 195 |
| Hsp92II | CATG | 6 cut(s) | 223, 608, 750, 998, 1217, 1387 |
| Kpn2I | TCCGGA | 1 cut(s) | 1711 |
| Kzo9I | GATC | 4 cut(s) | 150, 216, 417, 1281 |
| LmnI | GCTCC | 7 cut(s) | 430, 538, 1185, 1235, 1378, 1489, 1714 |
| Lsp1109I | GCAGC | 4 cut(s) | 56, 1087, 1164, 1493 |
| LweI | GCATC | 3 cut(s) | 798, 864, 1576 |
| MaeI | CTAG | 4 cut(s) | 473, 615, 1106, 1530 |
| MaeII | ACGT | 2 cut(s) | 195, 1292 |
| MaeIII | GTNAC | 5 cut(s) | 245, 464, 886, 1014, 1441 |
| MalI | GATC | 4 cut(s) | 152, 218, 419, 1283 |
| MboI | GATC | 4 cut(s) | 150, 216, 417, 1281 |
| MboII | GAAGA | 9 cut(s) | 671, 1276, 1291, 1336, 1378, 1417, 1443, 1485, 1697 |
| MfeI | CAATTG | 1 cut(s) | 869 |
| MflI | RGATCY | 1 cut(s) | 1281 |
| MhlI | GDGCHC | 4 cut(s) | 114, 292, 1113, 1383 |
| MlyI | GAGTC | 2 cut(s) | 1063, 1157 |
| MmeI | TCCRAC | 1 cut(s) | 343 |
| MnlI | CCTC | 9 cut(s) | 72, 218, 220, 246, 329, 757, 1203, 1528, 1625 |
| Mph1103I | ATGCAT | 2 cut(s) | 1045, 1265 |
| MroI | TCCGGA | 1 cut(s) | 1711 |
| MroXI | GAANNNNTTC | 3 cut(s) | 486, 1283, 1689 |
| MseI | TTAA | 4 cut(s) | 299, 588, 600, 684 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1080 |
| MspA1I | CMGCKG | 1 cut(s) | 272 |
| MspI | CCGG | 2 cut(s) | 596, 1712 |
| MunI | CAATTG | 1 cut(s) | 869 |
| MvnI | CGCG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1487 |
| NdeII | GATC | 4 cut(s) | 150, 216, 417, 1281 |
| NheI | GCTAGC | 1 cut(s) | 472 |
| NlaIII | CATG | 6 cut(s) | 223, 608, 750, 998, 1217, 1387 |
| NlaIV | GGNNCC | 6 cut(s) | 340, 1053, 1111, 1170, 1237, 1516 |
| NmuCI | GTSAC | 3 cut(s) | 245, 464, 1014 |
| NsiI | ATGCAT | 2 cut(s) | 1045, 1265 |
| NspI | RCATGY | 3 cut(s) | 608, 750, 998 |
| OliI | CACNNNNGTG | 1 cut(s) | 1080 |
| PaeR7I | CTCGAG | 1 cut(s) | 250 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 192 |
| PdmI | GAANNNNTTC | 3 cut(s) | 486, 1283, 1689 |
| PfeI | GAWTC | 2 cut(s) | 713, 961 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 320 |
| PinAI | ACCGGT | 1 cut(s) | 595 |
| PkrI | GCNGC | 5 cut(s) | 71, 1102, 1179, 1252, 1483 |
| PleI | GAGTC | 2 cut(s) | 1063, 1156 |
| PpsI | GAGTC | 2 cut(s) | 1063, 1156 |
| Psp124BI | GAGCTC | 1 cut(s) | 1383 |
| Psp1406I | AACGTT | 1 cut(s) | 1292 |
| PspN4I | GGNNCC | 6 cut(s) | 340, 1053, 1111, 1170, 1237, 1516 |
| PspOMI | GGGCCC | 1 cut(s) | 1109 |
| PspPI | GGNCC | 7 cut(s) | 338, 666, 1051, 1109, 1110, 1424, 1514 |
| PspXI | VCTCGAGB | 1 cut(s) | 250 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 846, 878 |
| PsuI | RGATCY | 1 cut(s) | 1281 |
| PvuII | CAGCTG | 1 cut(s) | 272 |
| RsaI | GTAC | 2 cut(s) | 525, 1308 |
| RsaNI | GTAC | 2 cut(s) | 524, 1307 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1080 |
| SacI | GAGCTC | 1 cut(s) | 1383 |
| SaqAI | TTAA | 4 cut(s) | 299, 588, 600, 684 |
| SatI | GCNGC | 5 cut(s) | 70, 1101, 1178, 1251, 1482 |
| Sau3AI | GATC | 4 cut(s) | 150, 216, 417, 1281 |
| Sau96I | GGNCC | 7 cut(s) | 338, 666, 1051, 1109, 1110, 1424, 1514 |
| ScaI | AGTACT | 1 cut(s) | 525 |
| SchI | GAGTC | 2 cut(s) | 1063, 1157 |
| SduI | GDGCHC | 4 cut(s) | 114, 292, 1113, 1383 |
| SfaNI | GCATC | 3 cut(s) | 798, 864, 1576 |
| SfcI | CTRYAG | 3 cut(s) | 516, 882, 1730 |
| Sfr274I | CTCGAG | 1 cut(s) | 250 |
| SinI | GGWCC | 2 cut(s) | 666, 1051 |
| SlaI | CTCGAG | 1 cut(s) | 250 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1080 |
| SmlI | CTYRAG | 2 cut(s) | 250, 1184 |
| SmoI | CTYRAG | 2 cut(s) | 250, 1184 |
| SsiI | CCGC | 2 cut(s) | 72, 1250 |
| SspMI | CTAG | 4 cut(s) | 473, 615, 1106, 1530 |
| SstI | GAGCTC | 1 cut(s) | 1383 |
| TaaI | ACNGT | 1 cut(s) | 1082 |
| TaiI | ACGT | 2 cut(s) | 198, 1295 |
| TaqI | TCGA | 6 cut(s) | 95, 198, 251, 282, 309, 420 |
| TatI | WGTACW | 1 cut(s) | 523 |
| TauI | GCSGC | 1 cut(s) | 1253 |
| TfiI | GAWTC | 2 cut(s) | 713, 961 |
| Tru1I | TTAA | 4 cut(s) | 299, 588, 600, 684 |
| Tru9I | TTAA | 4 cut(s) | 299, 588, 600, 684 |
| TscAI | CASTG | 3 cut(s) | 473, 652, 1120 |
| TseFI | GTSAC | 3 cut(s) | 245, 464, 1014 |
| TseI | GCWGC | 4 cut(s) | 69, 1100, 1177, 1481 |
| Tsp45I | GTSAC | 3 cut(s) | 245, 464, 1014 |
| TspDTI | ATGAA | 6 cut(s) | 21, 713, 809, 1230, 1347, 1690 |
| TspGWI | ACGGA | 3 cut(s) | 200, 1248, 1378 |
| TspRI | CASTG | 3 cut(s) | 473, 652, 1120 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 320 |
| VneI | GTGCAC | 1 cut(s) | 288 |
| VpaK11BI | GGWCC | 2 cut(s) | 666, 1051 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1619 |
| XapI | RAATTY | 2 cut(s) | 51, 1642 |
| XbaI | TCTAGA | 2 cut(s) | 614, 1529 |
| XceI | RCATGY | 3 cut(s) | 608, 750, 998 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1317 |
| XhoI | CTCGAG | 1 cut(s) | 250 |
| XmnI | GAANNNNTTC | 3 cut(s) | 486, 1283, 1689 |
| XspI | CTAG | 4 cut(s) | 473, 615, 1106, 1530 |
| ZraI | GACGTC | 1 cut(s) | 196 |
| ZrmI | AGTACT | 1 cut(s) | 525 |
| Zsp2I | ATGCAT | 2 cut(s) | 1045, 1265 |