Rmu_sc0000126.1_g000005

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000126.1
OG0000796
Physical Location & Seq
Forward (+)
20917 .. 22925
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000126.1_g000005.1.cds

Sequence Viewer

Length: 705 bp
atgagcattgtgcccaaagagaacattgaagtaatctcacagagcattgggatcaacaatttgtctccagatgtagctctcgctctcgcccctgacgtcgaatatcgcctccgtgagatcatgcaggaggctatcaaatgtatgcgtcactcgaggagaactaaattgacagctgatgatgtcgatggtgcactcaatttaagaaatgtcgagccactatatggttttgtgtctggaggccccttgcgtttcaaaaaagcagttggacatagggatttgttttacattgatgacaaggatgtggatttcaaagatgtgatcgaagctcctttaccaaaagccccacttgatactggacttgtttgtcactggctagcaatagaaggtgttcaacctgcaattccggaaaatgcacctgtagaagtacttgcagctccttctgatggcaaaaagtatgagcaaaaggatgatggacttcctgttgagcttaaattaccggttaagcatgtattgtctagagagcttcagctatattttgacaaaatcactgagcttgtcgtgagtaggtctgatgttattcttcttaaaaaagcactattgagcttggctactgattcagggcttcatccattagttccttatttcacatgctttatagctgatgaggtggtaaatcttggcatattgctgatagccagaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

234

Amino Acids

25.87

Weight (kDa)

5.3

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 363
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 403
AccB7I CCANNNNNTGG 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 403
AclWI GGATC 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 2 cut(s) 221, 443
AgeI ACCGGT 1 cut(s) 496
AgsI TTSAA 4 cut(s) 29, 253, 310, 392
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 69
Alw44I GTGCAC 1 cut(s) 189
AlwI GGATC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 151
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 431
AsiGI ACCGGT 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 239
AsuNHI GCTAGC 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 151
BaeGI GKGCMC 2 cut(s) 15, 193
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 443
BccI CCATC 3 cut(s) 179, 437, 464
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 374, 516
BfmI CTRYAG 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
BmcAI AGTACT 1 cut(s) 426
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 241
BmtI GCTAGC 1 cut(s) 377
BpmI CTGGAG 2 cut(s) 51, 255
BsaHI GRCGYC 1 cut(s) 96
BsaWI WCCGGW 2 cut(s) 403, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 443
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 2 cut(s) 358, 374
BseAI TCCGGA 1 cut(s) 403
BseGI GGATG 3 cut(s) 304, 472, 625
BseLI CCNNNNNNNGG 2 cut(s) 221, 443
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 2 cut(s) 358, 374
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 2 cut(s) 15, 193
BseXI GCAGC 1 cut(s) 443
BshFI GGCC 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 2 cut(s) 404, 497
BslI CCNNNNNNNGG 2 cut(s) 221, 443
BsmAI GTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 15, 193
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 3 cut(s) 51, 117, 318
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 541
BspEI TCCGGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 403
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 2 cut(s) 358, 374
BssAI RCCGGY 1 cut(s) 496
BssMI GATC 3 cut(s) 51, 117, 318
BssNI GRCGYC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 549
BstF5I GGATG 3 cut(s) 304, 472, 625
BstKTI GATC 3 cut(s) 54, 120, 321
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 3 cut(s) 51, 117, 318
BstNSI RCATGY 2 cut(s) 509, 651
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 2 cut(s) 15, 193
BstV1I GCAGC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 3 cut(s) 304, 472, 625
BtsIMutI CAGTG 2 cut(s) 367, 546
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 375
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 425
CspAI ACCGGT 1 cut(s) 496
CviAII CATG 3 cut(s) 121, 506, 648
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 549
DpnI GATC 3 cut(s) 53, 119, 320
DpnII GATC 3 cut(s) 51, 117, 318
DrdI GACNNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 239
FaeI CATG 3 cut(s) 124, 509, 651
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 3 cut(s) 120, 505, 647
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 3 cut(s) 311, 479, 612
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 2 cut(s) 374, 516
GluI GCNGC 1 cut(s) 432
GsuI CTGGAG 2 cut(s) 51, 255
HaeIII GGCC 1 cut(s) 240
HapII CCGG 2 cut(s) 404, 497
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 3 cut(s) 124, 509, 651
HinfI GANTC 1 cut(s) 614
HpaII CCGG 2 cut(s) 404, 497
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 442, 571
Hpy188III TCNNGA 5 cut(s) 68, 234, 404, 516, 559
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 377, 447
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 5 cut(s) 124, 191, 398, 413, 431
HpyF3I CTNAG 1 cut(s) 549
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 3 cut(s) 124, 509, 651
Kpn2I TCCGGA 1 cut(s) 403
Kzo9I GATC 3 cut(s) 51, 117, 318
LmnI GCTCC 2 cut(s) 331, 439
Lsp1109I GCAGC 1 cut(s) 443
MaeI CTAG 2 cut(s) 374, 516
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 146, 365
MalI GATC 3 cut(s) 53, 119, 320
MboI GATC 3 cut(s) 51, 117, 318
MboII GAAGA 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 15, 193
MluCI AATT 5 cut(s) 58, 164, 196, 399, 491
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 6 cut(s) 119, 121, 147, 230, 658, 692
MroI TCCGGA 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 4 cut(s) 200, 489, 501, 585
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 404, 497
NdeII GATC 3 cut(s) 51, 117, 318
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 3 cut(s) 124, 509, 651
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 146, 365
NspI RCATGY 2 cut(s) 509, 651
PaeR7I CTCGAG 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 614
PflMI CCANNNNNTGG 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 496
PkrI GCNGC 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 239
PspXI VCTCGAGB 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SaqAI TTAA 4 cut(s) 200, 489, 501, 585
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 3 cut(s) 51, 117, 318
Sau96I GGNCC 1 cut(s) 239
ScaI AGTACT 1 cut(s) 426
SduI GDGCHC 2 cut(s) 15, 193
SfcI CTRYAG 1 cut(s) 417
Sfr274I CTCGAG 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 5 cut(s) 58, 164, 196, 399, 491
SspMI CTAG 2 cut(s) 374, 516
TaiI ACGT 1 cut(s) 99
TaqI TCGA 5 cut(s) 99, 152, 183, 210, 321
TasI AATT 5 cut(s) 58, 164, 196, 399, 491
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 4 cut(s) 200, 489, 501, 585
Tru9I TTAA 4 cut(s) 200, 489, 501, 585
TscAI CASTG 2 cut(s) 374, 553
TseFI GTSAC 2 cut(s) 146, 365
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 2 cut(s) 146, 365
TspDTI ATGAA 1 cut(s) 614
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 2 cut(s) 374, 553
Van91I CCANNNNNTGG 1 cut(s) 221
VneI GTGCAC 1 cut(s) 189
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 2 cut(s) 509, 651
XhoI CTCGAG 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 374, 516
ZraI GACGTC 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.