Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8147136.1

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 610

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8147136.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ctgcttttctttttagcacttgctgtatactctgatgtcaaaaaatctgaatacaaggaagacggacttcctgtagatgttaaattgcccgttaagcatgtactatcaaaggaacttcagctatactttgagaagattacagggcttactcaaaggtctacctcaatcctttttaaagaagcattagtgagcttggcaacagattcagggctccatccgttggttccttactttacgtgtttcattgctgatgaggttacacgcaatttgaataattttctcctcctatttgctttaatgcgtcttgtccggagtcttcttcaaaatcctcacatacacgttgaaccttat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

117

Amino Acids

13.39

Weight (kDa)

7.09

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccI	GTMKAC	2 cut(s)	27, 158
AccIII	TCCGGA	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	2 cut(s)	236, 337
AgsI	TTSAA	3 cut(s)	271, 323, 344
AluBI	AGCT	2 cut(s)	121, 192
AluI	AGCT	2 cut(s)	121, 192
Aor13HI	TCCGGA	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	2 cut(s)	66, 308
BccI	CCATC	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	212, 225
BpiI	GAAGAC	2 cut(s)	66, 308
BsaAI	YACGTR	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	309
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	212, 225
BsrDI	GCAATG	1 cut(s)	243
BssNAI	GTATAC	1 cut(s)	28
Bst1107I	GTATAC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	72
BstV2I	GAAGAC	2 cut(s)	66, 308
BstZ17I	GTATAC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	214
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	4 cut(s)	121, 145, 192, 211
CviKI_1	RGCY	4 cut(s)	121, 145, 192, 211
CviQI	GTAC	1 cut(s)	101
DraI	TTTAAA	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	1 cut(s)	101
FaiI	YATR	4 cut(s)	28, 99, 124, 335
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	1 cut(s)	97
FblI	GTMKAC	2 cut(s)	27, 158
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	213
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	290
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	2 cut(s)	203, 313
HpaII	CCGG	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	28, 159
Hpy188I	TCNGA	2 cut(s)	34, 49
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	2 cut(s)	28, 159
HpyCH4IV	ACGT	2 cut(s)	236, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	2 cut(s)	236, 339
Hsp92II	CATG	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	4 cut(s)	84, 126, 192, 323
MaeII	ACGT	2 cut(s)	236, 339
MaeIII	GTNAC	1 cut(s)	256
MboII	GAAGA	4 cut(s)	71, 145, 308, 311
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	3 cut(s)	83, 265, 274
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	4 cut(s)	172, 247, 293, 339
MroI	TCCGGA	1 cut(s)	309
MseI	TTAA	4 cut(s)	81, 93, 174, 296
MspI	CCGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	212, 225
NspI	RCATGY	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	212, 225
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	81, 93, 174, 296
SchI	GAGTC	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	8 cut(s)	123, 158, 164, 194, 239, 258, 342, 349
SfcI	CTRYAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	83, 265, 274
TaiI	ACGT	2 cut(s)	239, 342
TasI	AATT	3 cut(s)	83, 265, 274
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	4 cut(s)	81, 93, 174, 296
Tru9I	TTAA	4 cut(s)	81, 93, 174, 296
TspDTI	ATGAA	1 cut(s)	232
TspGWI	ACGGA	2 cut(s)	78, 207
Van91I	CCANNNNNTGG	1 cut(s)	220
XceI	RCATGY	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	27, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.