Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001715.1

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Forward (+)

136880 .. 137791

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001715.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgtcgagtaccgggttcgcgagatcatgcaggaggccatcaaatgcatgtgacacacagactgttctgacaaccgatgatgtggatcgcgcacttaaattaagaaatgtggagccaatatatggctttggttctggagatcctttgggattcaagggggctgctggacatagggatttgttctgcatagatgacaaggatgttgaatttaaagatgtgattgaggcacctttgccaaatgcaccatttgatgtatccgttactactcactggctggcaatcgaaggttttcaacctgcaattccagaaaatgctccagtgaaggtatcctgcctaaacttaggtgcaaggtttcttggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

120

Amino Acids

12.97

Weight (kDa)

5.01

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccII	CGCG	2 cut(s)	20, 90
AclWI	GGATC	2 cut(s)	93, 134
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	154, 206, 293
AlwI	GGATC	2 cut(s)	93, 134
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	46
BciVI	GTATCC	2 cut(s)	265, 337
BcnI	CCSGG	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	304
BfuI	GTATCC	2 cut(s)	265, 337
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	114, 228
BmrFI	CCNGG	1 cut(s)	13
BpmI	CTGGAG	2 cut(s)	156, 300
BpuMI	CCSGG	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	275, 317
Bse8I	GATNNNNATC	1 cut(s)	84
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	2 cut(s)	275, 317
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	2 cut(s)	20, 90
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	23, 85, 139
Bsp68I	TCGCGA	1 cut(s)	20
BspANI	GGCC	1 cut(s)	37
BspFNI	CGCG	2 cut(s)	20, 90
BspLI	GGNNCC	2 cut(s)	114, 228
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	93, 134
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	275, 317
BssMI	GATC	3 cut(s)	23, 85, 139
Bst4CI	ACNGT	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	20, 90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	26, 88, 142
BstMBI	GATC	3 cut(s)	23, 85, 139
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	11
BstUI	CGCG	2 cut(s)	20, 90
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	2 cut(s)	265, 337
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	268, 324
BtuMI	TCGCGA	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	27, 48
CviJI	RGCY	6 cut(s)	37, 115, 126, 161, 274, 360
CviKI_1	RGCY	6 cut(s)	37, 115, 126, 161, 274, 360
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	3 cut(s)	25, 87, 141
DpnII	GATC	3 cut(s)	23, 85, 139
DraI	TTTAAA	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	2 cut(s)	30, 51
FaiI	YATR	6 cut(s)	28, 49, 121, 123, 171, 188
FatI	CATG	2 cut(s)	26, 47
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	162
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	2 cut(s)	156, 300
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	30, 51
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	19, 135, 305
HpyAV	CCTTC	2 cut(s)	278, 316
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	6 cut(s)	30, 47, 186, 242, 299, 347
HpyF3I	CTNAG	1 cut(s)	340
Hsp92II	CATG	2 cut(s)	30, 51
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	23, 85, 139
LmnI	GCTCC	2 cut(s)	112, 319
Lsp1109I	GCAGC	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	50, 259
MalI	GATC	3 cut(s)	25, 87, 141
MboI	GATC	3 cut(s)	23, 85, 139
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	3 cut(s)	98, 206, 300
MnlI	CCTC	2 cut(s)	27, 217
Mph1103I	ATGCAT	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	3 cut(s)	96, 101, 210
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
MvnI	CGCG	2 cut(s)	20, 90
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	23, 85, 139
NlaIII	CATG	2 cut(s)	30, 51
NlaIV	GGNNCC	2 cut(s)	114, 228
NmuCI	GTSAC	1 cut(s)	50
NruI	TCGCGA	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	114, 228
PsuI	RGATCY	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	20
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	96, 101, 210
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	23, 85, 139
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	6 cut(s)	232, 289, 298, 327, 346, 353
Sse9I	AATT	3 cut(s)	98, 206, 300
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	5, 282
TasI	AATT	3 cut(s)	98, 206, 300
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	3 cut(s)	96, 101, 210
Tru9I	TTAA	3 cut(s)	96, 101, 210
TscAI	CASTG	2 cut(s)	275, 324
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	2 cut(s)	275, 324
Van91I	CCANNNNNTGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.