Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

19161578 .. 19162383

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0195000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCGGGCCAGGGCAGAGGAGACCGGTCTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACGGACGCCATGAGCTTCAAAGACGTGGTGCAGAAGCTGACCGGAAAAGACTCGAGGGTGGCGTATGAAGTGCCGGAGCCGCCGCCTCCGCCGCCGGTTACGAATAACAAGTGTACGTCCCAGTTCAGTAATTTCAGAGATCAAGGACTGATCAATGGGATTAGGTCTTCGATGACGAACAGTAACTCAAATCCTGCTGGATTAATGCCTCGCAGTAATTCATCAGTTATGATGAGGAACATCTCCTTCAAAGAGTTTGATAGATTGTTCAGAGAGATGCCGCCGATGGAGGAGTACTTTTGGACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

125

Amino Acids

14.16

Weight (kDa)

8.82

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	15 - 40	1.7e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	146, 149, 155, 158, 347
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	59, 181, 362
AgeI	ACCGGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	85, 316
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	2 cut(s)	81, 103
AluI	AGCT	2 cut(s)	81, 103
Alw26I	GTCTC	2 cut(s)	15, 59
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	1 cut(s)	7
AseI	ATTAAT	1 cut(s)	269
AsiGI	ACCGGT	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	225
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	11
BclI	TGATCA	2 cut(s)	42, 216
BcoDI	GTCTC	2 cut(s)	15, 59
BisI	GCNGC	4 cut(s)	146, 149, 158, 347
BlsI	GCNGC	4 cut(s)	147, 150, 159, 348
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	2 cut(s)	24, 107
Bse118I	RCCGGY	2 cut(s)	24, 160
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	10
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	33, 371
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	9
BshTI	ACCGGT	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	4 cut(s)	25, 108, 140, 161
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	15, 59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	42, 205, 216
BspACI	CCGC	5 cut(s)	146, 149, 155, 158, 347
BspANI	GGCC	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	15
BsrFI	RCCGGY	2 cut(s)	24, 160
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	2 cut(s)	24, 160
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	3 cut(s)	42, 205, 216
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	61
BstKTI	GATC	3 cut(s)	45, 208, 219
BstMAI	GTCTC	2 cut(s)	15, 59
BstMBI	GATC	3 cut(s)	42, 205, 216
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 154, 157
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	24, 160
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	58, 180, 361
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	4 cut(s)	9, 81, 103, 145
CviKI_1	RGCY	4 cut(s)	9, 81, 103, 145
CviQI	GTAC	3 cut(s)	58, 180, 361
DpnI	GATC	3 cut(s)	44, 207, 218
DpnII	GATC	3 cut(s)	42, 205, 216
EciI	GGCGGA	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 132, 296
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	75
FbaI	TGATCA	2 cut(s)	42, 216
Fnu4HI	GCNGC	4 cut(s)	146, 149, 158, 347
Fsp4HI	GCNGC	4 cut(s)	146, 149, 158, 347
GluI	GCNGC	4 cut(s)	146, 149, 158, 347
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	4 cut(s)	25, 108, 140, 161
HgaI	GACGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	4 cut(s)	25, 108, 140, 161
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	2 cut(s)	203, 338
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	2 cut(s)	28, 322
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	3 cut(s)	60, 90, 182
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 154, 157
HpySE526I	ACGT	3 cut(s)	60, 90, 182
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	79
Ksp22I	TGATCA	2 cut(s)	42, 216
Kzo9I	GATC	3 cut(s)	42, 205, 216
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	23, 38, 121, 153, 174, 200, 249, 273
LweI	GCATC	1 cut(s)	333
MaeII	ACGT	3 cut(s)	60, 90, 182
MaeIII	GTNAC	2 cut(s)	163, 248
MalI	GATC	3 cut(s)	44, 207, 218
MboI	GATC	3 cut(s)	42, 205, 216
MboII	GAAGA	1 cut(s)	225
MluCI	AATT	2 cut(s)	196, 283
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	6 cut(s)	11, 114, 162, 285, 294, 349
MseI	TTAA	2 cut(s)	269, 376
MspI	CCGG	4 cut(s)	25, 108, 140, 161
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	145, 154, 157
NdeII	GATC	3 cut(s)	42, 205, 216
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	144
PaeR7I	CTCGAG	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	4 cut(s)	147, 150, 159, 348
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	7
PspXI	VCTCGAGB	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	103
RsaI	GTAC	3 cut(s)	59, 181, 362
RsaNI	GTAC	3 cut(s)	58, 180, 361
SaqAI	TTAA	2 cut(s)	269, 376
SatI	GCNGC	4 cut(s)	146, 149, 158, 347
Sau3AI	GATC	3 cut(s)	42, 205, 216
Sau96I	GGNCC	1 cut(s)	7
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	7 cut(s)	39, 63, 83, 93, 105, 185, 233
SfaNI	GCATC	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	2 cut(s)	196, 283
SsiI	CCGC	5 cut(s)	146, 149, 155, 158, 347
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	3 cut(s)	63, 93, 185
TaqI	TCGA	2 cut(s)	119, 236
TasI	AATT	2 cut(s)	196, 283
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	4 cut(s)	148, 151, 160, 349
Tru1I	TTAA	2 cut(s)	269, 376
Tru9I	TTAA	2 cut(s)	269, 376
TspDTI	ATGAA	2 cut(s)	147, 276
TspGWI	ACGGA	1 cut(s)	83
VspI	ATTAAT	1 cut(s)	269
XhoI	CTCGAG	1 cut(s)	118
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.