Rmu_co8499353.1_g000001

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8499353.1
OG0000796
Physical Location & Seq
Reverse (-)
80 .. 2631
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8499353.1_g000001.1.cds

Sequence Viewer

Length: 651 bp
atgccatctgtagttacttgccttgttgcaaaaagattgggcaacaggtttgctgacaaccattgggaacttagagacttcacggcgaatctggttgcttcaatttgtaaaaggtttgggcatgtctataatactctccagtcacgacttacaaaaactttggtcaatgcatttttggacccaaaacgcaccttgactcaacactacggtgcaattcaaggtttagctgctctagggcccagtgtggttcgccttctgatactgccaaatctggagtcatatctgcgacttctggaaccagagctgcttcttgagaagcaaaagaatgagataaagaggcatgaagcttggcgtgtttacggagccttgttgagtgcggcagggcaatgcatatatgatagactgaagatcttcccaacgttgccatctcctgtaccacaatctctctggaagaccaatgaaagaattgttctcactacaccaagtggaaaagatggggctgatgctcagtctctaaagaaatcagctctcctcaatcaggtctggaaggacgaattgaattctgggaaactactggtatcattgtttcagttgtttggtgaagacattctccccttcattccagctccggagatgtctttgtttctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

216

Amino Acids

24.29

Weight (kDa)

9.4

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 1 cut(s) 377
AclI AACGTT 1 cut(s) 419
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 425
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 3 cut(s) 102, 218, 559
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 5 cut(s) 227, 304, 347, 527, 626
AluI AGCT 5 cut(s) 227, 304, 347, 527, 626
Alw26I GTCTC 2 cut(s) 69, 516
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 1 cut(s) 236
ApaI GGGCCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 227, 304
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 2 cut(s) 410, 606
AspS9I GGNCC 3 cut(s) 178, 236, 237
AsuHPI GGTGA 1 cut(s) 611
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 2 cut(s) 458, 609
BbvI GCAGC 2 cut(s) 214, 291
BccI CCATC 3 cut(s) 13, 433, 488
BceAI ACGGC 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 69, 516
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 9
BglII AGATCT 1 cut(s) 408
BisI GCNGC 3 cut(s) 228, 305, 378
BlsI GCNGC 3 cut(s) 229, 306, 379
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 3 cut(s) 178, 236, 237
BmiI GGNNCC 4 cut(s) 180, 238, 297, 364
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 234
BpiI GAAGAC 2 cut(s) 458, 609
BpmI CTGGAG 2 cut(s) 122, 293
BpuEI CTTGAG 1 cut(s) 332
BsaWI WCCGGW 1 cut(s) 628
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 3 cut(s) 139, 240, 579
Bse3DI GCAATG 1 cut(s) 392
BseAI TCCGGA 1 cut(s) 628
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 3 cut(s) 139, 240, 579
BseRI GAGGAG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 2 cut(s) 214, 291
BshFI GGCC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 2 cut(s) 69, 516
BsnI GGCC 1 cut(s) 238
Bsp120I GGGCCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 1 cut(s) 408
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 520
BspEI TCCGGA 1 cut(s) 628
BspLI GGNNCC 4 cut(s) 180, 238, 297, 364
BsrDI GCAATG 1 cut(s) 392
BsrI ACTGG 3 cut(s) 139, 240, 579
BssMI GATC 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 71, 507
BstENI CCTNNNNNAGG 1 cut(s) 536
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 2 cut(s) 69, 516
BstMBI GATC 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 214, 291
BstV2I GAAGAC 2 cut(s) 458, 609
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 247
Cfr13I GGNCC 3 cut(s) 178, 236, 237
Csp6I GTAC 1 cut(s) 434
CviAII CATG 2 cut(s) 122, 341
CviJI RGCY 8 cut(s) 227, 238, 304, 347, 365, 500, 527, 626
CviKI_1 RGCY 8 cut(s) 227, 238, 304, 347, 365, 500, 527, 626
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 2 cut(s) 71, 507
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DraIII CACNNNGTG 1 cut(s) 485
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 559
EcoT22I ATGCAT 2 cut(s) 172, 392
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 2 cut(s) 125, 344
FaiI YATR 7 cut(s) 123, 129, 280, 342, 392, 394, 396
FatI CATG 2 cut(s) 121, 340
Fnu4HI GCNGC 3 cut(s) 228, 305, 378
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 228, 305, 378
FspBI CTAG 1 cut(s) 233
GluI GCNGC 3 cut(s) 228, 305, 378
GsuI CTGGAG 2 cut(s) 122, 293
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 629
Hin1II CATG 2 cut(s) 125, 344
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 3 cut(s) 88, 196, 275
HpaII CCGG 1 cut(s) 629
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 7 cut(s) 144, 272, 293, 311, 448, 544, 629
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 3 cut(s) 263, 541, 625
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 4 cut(s) 29, 170, 212, 390
HpyF3I CTNAG 2 cut(s) 71, 507
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 2 cut(s) 125, 344
Kpn2I TCCGGA 1 cut(s) 628
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 362, 631
Lsp1109I GCAGC 2 cut(s) 214, 291
LweI GCATC 1 cut(s) 493
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 13, 141
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 4 cut(s) 403, 418, 463, 614
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 5 cut(s) 102, 213, 465, 554, 559
MlyI GAGTC 2 cut(s) 190, 284
MnlI CCTC 2 cut(s) 330, 542
Mph1103I ATGCAT 2 cut(s) 172, 392
MroI TCCGGA 1 cut(s) 628
MroXI GAANNNNTTC 2 cut(s) 410, 606
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 1 cut(s) 629
NdeII GATC 1 cut(s) 408
NlaIII CATG 2 cut(s) 125, 344
NlaIV GGNNCC 4 cut(s) 180, 238, 297, 364
NmuCI GTSAC 1 cut(s) 141
NsiI ATGCAT 2 cut(s) 172, 392
NspI RCATGY 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 207
PdmI GAANNNNTTC 2 cut(s) 410, 606
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 229, 306, 379
PleI GAGTC 2 cut(s) 190, 283
PpsI GAGTC 2 cut(s) 190, 283
Psp1406I AACGTT 1 cut(s) 419
PspN4I GGNNCC 4 cut(s) 180, 238, 297, 364
PspOMI GGGCCC 1 cut(s) 236
PspPI GGNCC 3 cut(s) 178, 236, 237
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 207
SatI GCNGC 3 cut(s) 228, 305, 378
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 3 cut(s) 178, 236, 237
SchI GAGTC 2 cut(s) 190, 284
SduI GDGCHC 1 cut(s) 240
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 5 cut(s) 102, 213, 465, 554, 559
SsiI CCGC 1 cut(s) 377
SspMI CTAG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 422
TasI AATT 5 cut(s) 102, 213, 465, 554, 559
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 1 cut(s) 88
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 2 cut(s) 227, 304
Tsp45I GTSAC 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 357, 474, 607
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 178
XagI CCTNNNNNAGG 1 cut(s) 536
XapI RAATTY 1 cut(s) 559
XceI RCATGY 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
XmnI GAANNNNTTC 2 cut(s) 410, 606
XspI CTAG 1 cut(s) 233
Zsp2I ATGCAT 2 cut(s) 172, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.