Rmu_sc0005255.1_g000023

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005255.1
Physical Location & Seq
Reverse (-)
104676 .. 107995
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005255.1_g000023.1.cds

Sequence Viewer

Length: 1170 bp
atgagcaacgtgcctaaagaagcaattgaggtcgtagcgcagagcattggcattaccaatttgtctccagatgttgcacttgctctcaccccagatgtcgagtaccgggttcgcgagatcatgcaggaggccatcaaatgcatgcgacactcgagacggactattctgacaaccgatgatgtggatagtgcacttaaattgagaaatgtggagccaatatatggctttggttctggagatcctttgaggttcaagagagctgctggacatagggatttgttctacatagatgacaaggatgttgaatttaaagatgtgattgaggcacctttgccaaaagcaccatttgatgtgtcagttactgctcactggctggcaatcgaaggtgttcaacctgcaattccagaaaatgctccagttgaagcacttgctgtatactctgatgtcaaaaaatctgaatacaaggaagacggacttcctgtagatgttaaattgcccgttaagcatgtactatcaaaggaacttcagctatactttgagaagattacagggcttactcaaaggtctacctcaatcctttttaaagaagcattagtgagcttggcaacagattcagggctccatccgttggttccttactttacgtgtttcattgctgatgaggttacacgcaatttgaataattttctcctcctatttgctttaatgcgtcttgtccggagccttcttcaaaatcctcacatacacgttgaaccttatctacaccaattgatgccttctgttattacctgccttgttgcaaaaagactagggaatagatatactgacaatcactgggaacttagaaaccttactgccaacctggtttcttcaatctgcaaaagatttagacatttttgtcataatcttcagccacgtttgacaagtaccttgcttcacgctttcttggacccaaccaaagcattaccccaacattatggcgcaattcaagggctagcagctcttggtcccaatgtggtttgcttacttatactaccaaatctcgattcgtatatgcaacttcttgagccagaaatgatacttgagaagcaaaagaatgagataaagaggcatgaagcttggcgtgtctatggggcctttgctgcgtgcggctggccaatgcatgcatga

Protein Analysis

389

Amino Acids

43.95

Weight (kDa)

6.74

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 897
Acc36I ACCTGC 2 cut(s) 403, 797
AccB1I GGYRCC 1 cut(s) 325
AccB7I CCANNNNNTGG 2 cut(s) 221, 628
AccI GTMKAC 2 cut(s) 435, 566
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 717
AciI CCGC 1 cut(s) 1149
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 1154
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 2 cut(s) 509, 893
AfaI GTAC 3 cut(s) 104, 510, 928
AfiI CCNNNNNNNGG 2 cut(s) 221, 628
AflIII ACRYGT 2 cut(s) 644, 745
AgsI TTSAA 9 cut(s) 253, 305, 392, 422, 679, 731, 752, 873, 989
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 2 cut(s) 1030, 1062
AluBI AGCT 5 cut(s) 260, 529, 600, 1001, 1118
AluI AGCT 5 cut(s) 260, 529, 600, 1001, 1118
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 69, 148
Alw44I GTGCAC 1 cut(s) 189
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 151
Aor13HI TCCGGA 1 cut(s) 717
AoxI GGCC 3 cut(s) 129, 1134, 1154
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 3 cut(s) 260, 998, 1142
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 2 cut(s) 40, 983
AspS9I GGNCC 3 cut(s) 949, 1007, 1134
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 79
AsuNHI GCTAGC 1 cut(s) 994
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 2 cut(s) 949, 1007
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 1156
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 3 cut(s) 247, 1010, 1129
BccI CCATC 2 cut(s) 140, 630
BciT130I CCWGG 1 cut(s) 863
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 2 cut(s) 69, 148
BfaI CTAG 2 cut(s) 809, 995
BfmI CTRYAG 1 cut(s) 480
BfuAI ACCTGC 2 cut(s) 403, 797
BisI GCNGC 4 cut(s) 261, 999, 1143, 1150
BlsI GCNGC 4 cut(s) 262, 1000, 1144, 1151
Bme1390I CCNGG 2 cut(s) 107, 863
Bme18I GGWCC 2 cut(s) 949, 1007
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 3 cut(s) 949, 1007, 1134
BmiI GGNNCC 8 cut(s) 213, 327, 620, 633, 722, 951, 1009, 1135
BmrFI CCNGG 2 cut(s) 107, 863
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 1 cut(s) 762
BmtI GCTAGC 1 cut(s) 998
BmuI ACTGGG 1 cut(s) 844
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 3 cut(s) 51, 255, 399
BpuEI CTTGAG 2 cut(s) 1085, 1103
BpuMI CCSGG 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 645
BsaWI WCCGGW 1 cut(s) 717
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 628
Bse1I ACTGG 3 cut(s) 374, 416, 839
Bse3DI GCAATG 1 cut(s) 651
BseAI TCCGGA 1 cut(s) 717
BseBI CCWGG 1 cut(s) 863
BseGI GGATG 2 cut(s) 304, 622
BseLI CCNNNNNNNGG 2 cut(s) 221, 628
BseMI GCAATG 1 cut(s) 651
BseNI ACTGG 3 cut(s) 374, 416, 839
BseRI GAGGAG 1 cut(s) 680
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 3 cut(s) 247, 1010, 1129
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 131, 1136, 1156
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 2 cut(s) 106, 718
BslFI GGGAC 1 cut(s) 993
BslI CCNNNNNNNGG 2 cut(s) 221, 628
BsmAI GTCTC 2 cut(s) 69, 148
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 993
BsnI GGCC 3 cut(s) 131, 1136, 1156
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 193, 621
Bsp13I TCCGGA 1 cut(s) 717
Bsp143I GATC 2 cut(s) 117, 238
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 1 cut(s) 1149
BspANI GGCC 3 cut(s) 131, 1136, 1156
BspEI TCCGGA 1 cut(s) 717
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 8 cut(s) 213, 327, 620, 633, 722, 951, 1009, 1135
BspMI ACCTGC 2 cut(s) 403, 797
BspOI GCTAGC 1 cut(s) 998
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 651
BsrI ACTGG 3 cut(s) 374, 416, 839
BssMI GATC 2 cut(s) 117, 238
BssNAI GTATAC 1 cut(s) 436
Bst1107I GTATAC 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 645
BstC8I GCNNGC 6 cut(s) 143, 375, 996, 1147, 1154, 1164
BstDEI CTNAG 1 cut(s) 842
BstF5I GGATG 2 cut(s) 304, 622
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 2 cut(s) 40, 983
BstKTI GATC 2 cut(s) 120, 241
BstMAI GTCTC 2 cut(s) 69, 148
BstMBI GATC 2 cut(s) 117, 238
BstMWI GCNNNNNNNGC 2 cut(s) 502, 1142
BstNI CCWGG 1 cut(s) 863
BstNSI RCATGY 3 cut(s) 145, 509, 1166
BstSCI CCNGG 2 cut(s) 105, 861
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 247, 1010, 1129
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 977
BstYI RGATCY 1 cut(s) 238
BstZ17I GTATAC 1 cut(s) 436
BsuRI GGCC 3 cut(s) 131, 1136, 1156
BtsCI GGATG 2 cut(s) 304, 622
BtsIMutI CAGTG 2 cut(s) 367, 832
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 2 cut(s) 403, 797
Cac8I GCNNGC 6 cut(s) 143, 375, 996, 1147, 1154, 1164
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 2 cut(s) 40, 983
Cfr13I GGNCC 3 cut(s) 949, 1007, 1134
CseI GACGC 1 cut(s) 698
CsiI ACCWGGT 1 cut(s) 861
Csp6I GTAC 3 cut(s) 103, 509, 927
CviAII CATG 6 cut(s) 121, 142, 506, 1112, 1163, 1167
CviQI GTAC 3 cut(s) 103, 509, 927
DdeI CTNAG 1 cut(s) 842
DpnI GATC 2 cut(s) 119, 240
DpnII GATC 2 cut(s) 117, 238
DraI TTTAAA 2 cut(s) 310, 583
DrdI GACNNNNNNGTC 1 cut(s) 897
DseDI GACNNNNNNGTC 1 cut(s) 897
EaeI YGGCCR 1 cut(s) 1154
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 949, 1007
Eco57I CTGAAG 2 cut(s) 509, 893
Eco88I CYCGRG 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 1134
EcoRII CCWGG 1 cut(s) 861
EcoT22I ATGCAT 3 cut(s) 143, 1164, 1168
EcoT38I GRGCYC 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 6 cut(s) 124, 145, 509, 1115, 1166, 1170
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 1 cut(s) 993
FatI CATG 6 cut(s) 120, 141, 505, 1111, 1162, 1166
FblI GTMKAC 2 cut(s) 435, 566
Fnu4HI GCNGC 4 cut(s) 261, 999, 1143, 1150
FokI GGATG 2 cut(s) 311, 609
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 4 cut(s) 261, 999, 1143, 1150
FspBI CTAG 2 cut(s) 809, 995
GlaI GCGC 2 cut(s) 39, 982
GluI GCNGC 4 cut(s) 261, 999, 1143, 1150
GsuI CTGGAG 3 cut(s) 51, 255, 399
HaeIII GGCC 3 cut(s) 131, 1136, 1156
HapII CCGG 2 cut(s) 106, 718
HgaI GACGC 1 cut(s) 698
HhaI GCGC 2 cut(s) 40, 983
Hin1II CATG 6 cut(s) 124, 145, 509, 1115, 1166, 1170
Hin6I GCGC 2 cut(s) 38, 981
HinP1I GCGC 2 cut(s) 38, 981
HindIII AAGCTT 1 cut(s) 1116
HinfI GANTC 2 cut(s) 611, 1046
HpaII CCGG 2 cut(s) 106, 718
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 3 cut(s) 191, 436, 567
Hpy188I TCNGA 3 cut(s) 168, 442, 457
Hpy188III TCNNGA 9 cut(s) 68, 113, 153, 234, 253, 404, 718, 1043, 1064
Hpy8I GTNNAC 3 cut(s) 191, 436, 567
HpyAV CCTTC 3 cut(s) 377, 734, 786
HpyCH4IV ACGT 4 cut(s) 9, 644, 747, 916
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 1142
HpyF3I CTNAG 1 cut(s) 842
HpySE526I ACGT 4 cut(s) 9, 644, 747, 916
Hsp92II CATG 6 cut(s) 124, 145, 509, 1115, 1166, 1170
HspAI GCGC 2 cut(s) 38, 981
Kpn2I TCCGGA 1 cut(s) 717
Kzo9I GATC 2 cut(s) 117, 238
LmnI GCTCC 4 cut(s) 211, 418, 624, 720
Lsp1109I GCAGC 3 cut(s) 247, 1010, 1129
LweI GCATC 1 cut(s) 762
MabI ACCWGGT 1 cut(s) 861
MaeI CTAG 2 cut(s) 809, 995
MaeII ACGT 4 cut(s) 9, 644, 747, 916
MaeIII GTNAC 2 cut(s) 358, 664
MalI GATC 2 cut(s) 119, 240
MboI GATC 2 cut(s) 117, 238
MboII GAAGA 5 cut(s) 479, 553, 719, 861, 899
MfeI CAATTG 2 cut(s) 24, 767
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 193, 621
MlsI TGGCCA 1 cut(s) 1156
MluNI TGGCCA 1 cut(s) 1156
MnlI CCTC 9 cut(s) 22, 121, 240, 316, 580, 655, 701, 747, 1101
Mox20I TGGCCA 1 cut(s) 1156
Mph1103I ATGCAT 3 cut(s) 143, 1164, 1168
MroI TCCGGA 1 cut(s) 717
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 1156
MseI TTAA 6 cut(s) 195, 309, 489, 501, 582, 704
Msp20I TGGCCA 1 cut(s) 1156
MspI CCGG 2 cut(s) 106, 718
MspR9I CCNGG 2 cut(s) 107, 863
MunI CAATTG 2 cut(s) 24, 767
MvaI CCWGG 1 cut(s) 863
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 502, 1142
NciI CCSGG 1 cut(s) 107
NdeII GATC 2 cut(s) 117, 238
NheI GCTAGC 1 cut(s) 994
NlaIII CATG 6 cut(s) 124, 145, 509, 1115, 1166, 1170
NlaIV GGNNCC 8 cut(s) 213, 327, 620, 633, 722, 951, 1009, 1135
NruI TCGCGA 1 cut(s) 114
NsiI ATGCAT 3 cut(s) 143, 1164, 1168
NspI RCATGY 3 cut(s) 145, 509, 1166
PaeI GCATGC 2 cut(s) 145, 1166
PaeR7I CTCGAG 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 611, 1046
PflMI CCANNNNNTGG 2 cut(s) 221, 628
PkrI GCNGC 4 cut(s) 262, 1000, 1144, 1151
Ppu21I YACGTR 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 861
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 8 cut(s) 213, 327, 620, 633, 722, 951, 1009, 1135
PspPI GGNCC 3 cut(s) 949, 1007, 1134
PsrI GAACNNNNNNTAC 2 cut(s) 744, 776
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 238
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 3 cut(s) 104, 510, 928
RsaNI GTAC 3 cut(s) 103, 509, 927
SaqAI TTAA 6 cut(s) 195, 309, 489, 501, 582, 704
SatI GCNGC 4 cut(s) 261, 999, 1143, 1150
Sau3AI GATC 2 cut(s) 117, 238
Sau96I GGNCC 3 cut(s) 949, 1007, 1134
ScrFI CCNGG 2 cut(s) 107, 863
SduI GDGCHC 2 cut(s) 193, 621
SexAI ACCWGGT 1 cut(s) 861
SfaNI GCATC 1 cut(s) 762
SfcI CTRYAG 1 cut(s) 480
Sfr274I CTCGAG 1 cut(s) 151
SinI GGWCC 2 cut(s) 949, 1007
SlaI CTCGAG 1 cut(s) 151
SmlI CTYRAG 3 cut(s) 151, 1064, 1082
SmoI CTYRAG 3 cut(s) 151, 1064, 1082
SphI GCATGC 2 cut(s) 145, 1166
SsiI CCGC 1 cut(s) 1149
SspMI CTAG 2 cut(s) 809, 995
StyD4I CCNGG 2 cut(s) 105, 861
TaiI ACGT 4 cut(s) 12, 647, 750, 919
TaqI TCGA 4 cut(s) 99, 152, 381, 1044
TatI WGTACW 1 cut(s) 508
TauI GCSGC 1 cut(s) 1152
TfiI GAWTC 2 cut(s) 611, 1046
Tru1I TTAA 6 cut(s) 195, 309, 489, 501, 582, 704
Tru9I TTAA 6 cut(s) 195, 309, 489, 501, 582, 704
TscAI CASTG 2 cut(s) 374, 839
TseI GCWGC 3 cut(s) 260, 998, 1142
TspDTI ATGAA 2 cut(s) 640, 1128
TspGWI ACGGA 3 cut(s) 172, 486, 615
TspRI CASTG 2 cut(s) 374, 839
Van91I CCANNNNNTGG 2 cut(s) 221, 628
VneI GTGCAC 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 949, 1007
XapI RAATTY 1 cut(s) 305
XceI RCATGY 3 cut(s) 145, 509, 1166
XhoI CTCGAG 1 cut(s) 151
XmiI GTMKAC 2 cut(s) 435, 566
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 809, 995
Zsp2I ATGCAT 3 cut(s) 143, 1164, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.