Transcription initiation factor TFIID subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 403, 552, 797 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 628 |
| AccI | GTMKAC | 2 cut(s) | 483, 1024 |
| AccII | CGCG | 1 cut(s) | 77 |
| AccIII | TCCGGA | 1 cut(s) | 717 |
| AciI | CCGC | 3 cut(s) | 263, 855, 1148 |
| AclWI | GGATC | 1 cut(s) | 233 |
| AcoI | YGGCCR | 1 cut(s) | 1153 |
| AcsI | RAATTY | 2 cut(s) | 305, 673 |
| AcuI | CTGAAG | 1 cut(s) | 509 |
| AfaI | GTAC | 3 cut(s) | 104, 437, 510 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 221, 628 |
| AflIII | ACRYGT | 1 cut(s) | 1452 |
| AjiI | CACGTC | 1 cut(s) | 301 |
| AjnI | CCWGG | 1 cut(s) | 861 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1030, 1062 |
| AluBI | AGCT | 7 cut(s) | 260, 529, 553, 600, 1118, 1208, 1313 |
| AluI | AGCT | 7 cut(s) | 260, 529, 553, 600, 1118, 1208, 1313 |
| Alw21I | GWGCWC | 2 cut(s) | 193, 343 |
| Alw26I | GTCTC | 3 cut(s) | 1203, 1517, 1611 |
| Alw44I | GTGCAC | 1 cut(s) | 189 |
| AlwI | GGATC | 1 cut(s) | 233 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 362 |
| Aor13HI | TCCGGA | 1 cut(s) | 717 |
| AoxI | GGCC | 2 cut(s) | 1134, 1153 |
| ApaLI | GTGCAC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 4 cut(s) | 260, 431, 998, 1288 |
| ApoI | RAATTY | 2 cut(s) | 305, 673 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 387, 683 |
| AspLEI | GCGC | 2 cut(s) | 79, 711 |
| AspS9I | GGNCC | 4 cut(s) | 109, 949, 1007, 1134 |
| AsuC2I | CCSGG | 1 cut(s) | 107 |
| AsuHPI | GGTGA | 3 cut(s) | 79, 1573, 1580 |
| AsuNHI | GCTAGC | 1 cut(s) | 994 |
| AvaII | GGWCC | 3 cut(s) | 109, 949, 1007 |
| BaeGI | GKGCMC | 1 cut(s) | 193 |
| BalI | TGGCCA | 1 cut(s) | 1155 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 315, 347 |
| Bbv12I | GWGCWC | 2 cut(s) | 193, 343 |
| BbvCI | CCTCAGC | 1 cut(s) | 969 |
| BbvI | GCAGC | 4 cut(s) | 247, 443, 1010, 1300 |
| BccI | CCATC | 4 cut(s) | 464, 784, 1313, 1429 |
| BciT130I | CCWGG | 1 cut(s) | 863 |
| BcnI | CCSGG | 1 cut(s) | 107 |
| BcoDI | GTCTC | 3 cut(s) | 1203, 1517, 1611 |
| BfaI | CTAG | 5 cut(s) | 428, 567, 995, 1011, 1082 |
| BfmI | CTRYAG | 4 cut(s) | 171, 480, 1374, 1494 |
| BfuAI | ACCTGC | 3 cut(s) | 403, 552, 797 |
| BisI | GCNGC | 5 cut(s) | 261, 432, 999, 1149, 1289 |
| BlsI | GCNGC | 5 cut(s) | 262, 433, 1000, 1150, 1290 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 863 |
| Bme18I | GGWCC | 3 cut(s) | 109, 949, 1007 |
| BmgBI | CACGTC | 1 cut(s) | 301 |
| BmgT120I | GGNCC | 4 cut(s) | 109, 949, 1007, 1134 |
| BmiI | GGNNCC | 6 cut(s) | 110, 213, 633, 722, 951, 1135 |
| BmrFI | CCNGG | 2 cut(s) | 107, 863 |
| BmrI | ACTGGG | 1 cut(s) | 844 |
| BmsI | GCATC | 5 cut(s) | 696, 762, 1275, 1519, 1556 |
| BmtI | GCTAGC | 1 cut(s) | 998 |
| BmuI | ACTGGG | 1 cut(s) | 844 |
| BpmI | CTGGAG | 2 cut(s) | 255, 1188 |
| Bpu10I | CCTNAGC | 2 cut(s) | 969, 1506 |
| BpuEI | CTTGAG | 2 cut(s) | 136, 1160 |
| BpuMI | CCSGG | 1 cut(s) | 107 |
| Bsa29I | ATCGAT | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 1 cut(s) | 1003 |
| BsaWI | WCCGGW | 1 cut(s) | 717 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 221, 628 |
| Bse1I | ACTGG | 4 cut(s) | 374, 839, 1435, 1548 |
| Bse3DI | GCAATG | 2 cut(s) | 13, 1341 |
| BseAI | TCCGGA | 1 cut(s) | 717 |
| BseBI | CCWGG | 1 cut(s) | 863 |
| BseCI | ATCGAT | 1 cut(s) | 288 |
| BseDI | CCNNGG | 1 cut(s) | 1003 |
| BseGI | GGATG | 3 cut(s) | 1421, 1534, 1547 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 221, 628 |
| BseMI | GCAATG | 2 cut(s) | 13, 1341 |
| BseMII | CTCAG | 2 cut(s) | 983, 1520 |
| BseNI | ACTGG | 4 cut(s) | 374, 839, 1435, 1548 |
| BseRI | GAGGAG | 2 cut(s) | 1191, 1535 |
| BseSI | GKGCMC | 1 cut(s) | 193 |
| BseXI | GCAGC | 4 cut(s) | 247, 443, 1010, 1300 |
| Bsh1236I | CGCG | 1 cut(s) | 77 |
| BshFI | GGCC | 2 cut(s) | 1136, 1155 |
| BshVI | ATCGAT | 1 cut(s) | 288 |
| BsiHKAI | GWGCWC | 2 cut(s) | 193, 343 |
| BsiSI | CCGG | 2 cut(s) | 106, 718 |
| BslFI | GGGAC | 2 cut(s) | 49, 279 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 221, 628 |
| BsmAI | GTCTC | 3 cut(s) | 1203, 1517, 1611 |
| BsmBI | CGTCTC | 1 cut(s) | 1517 |
| BsmFI | GGGAC | 2 cut(s) | 49, 279 |
| BsnI | GGCC | 2 cut(s) | 1136, 1155 |
| Bsp1286I | GDGCHC | 2 cut(s) | 193, 343 |
| Bsp13I | TCCGGA | 1 cut(s) | 717 |
| Bsp143I | GATC | 3 cut(s) | 117, 238, 1168 |
| BspACI | CCGC | 3 cut(s) | 263, 855, 1148 |
| BspANI | GGCC | 2 cut(s) | 1136, 1155 |
| BspCNI | CTCAG | 2 cut(s) | 982, 1519 |
| BspDI | ATCGAT | 1 cut(s) | 288 |
| BspEI | TCCGGA | 1 cut(s) | 717 |
| BspFNI | CGCG | 1 cut(s) | 77 |
| BspLI | GGNNCC | 6 cut(s) | 110, 213, 633, 722, 951, 1135 |
| BspMI | ACCTGC | 3 cut(s) | 403, 552, 797 |
| BspOI | GCTAGC | 1 cut(s) | 998 |
| BspPI | GGATC | 1 cut(s) | 233 |
| BspQI | GCTCTTC | 1 cut(s) | 1217 |
| BsrDI | GCAATG | 2 cut(s) | 13, 1341 |
| BsrI | ACTGG | 4 cut(s) | 374, 839, 1435, 1548 |
| BssECI | CCNNGG | 1 cut(s) | 1003 |
| BssMI | GATC | 3 cut(s) | 117, 238, 1168 |
| BssT1I | CCWWGG | 1 cut(s) | 1003 |
| Bst2UI | CCWGG | 1 cut(s) | 863 |
| Bst4CI | ACNGT | 4 cut(s) | 163, 513, 1190, 1498 |
| Bst6I | CTCTTC | 2 cut(s) | 584, 1217 |
| BstC8I | GCNNGC | 7 cut(s) | 81, 143, 375, 996, 1153, 1163, 1270 |
| BstDEI | CTNAG | 3 cut(s) | 842, 969, 1506 |
| BstF5I | GGATG | 3 cut(s) | 1421, 1534, 1547 |
| BstFNI | CGCG | 1 cut(s) | 77 |
| BstHHI | GCGC | 2 cut(s) | 79, 711 |
| BstKTI | GATC | 3 cut(s) | 120, 241, 1171 |
| BstMAI | GTCTC | 3 cut(s) | 1203, 1517, 1611 |
| BstMBI | GATC | 3 cut(s) | 117, 238, 1168 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 431, 502, 1171, 1269 |
| BstNI | CCWGG | 1 cut(s) | 863 |
| BstNSI | RCATGY | 7 cut(s) | 145, 509, 648, 896, 1165, 1366, 1456 |
| BstSCI | CCNGG | 2 cut(s) | 105, 861 |
| BstSFI | CTRYAG | 4 cut(s) | 171, 480, 1374, 1494 |
| BstSLI | GKGCMC | 1 cut(s) | 193 |
| BstUI | CGCG | 1 cut(s) | 77 |
| BstV1I | GCAGC | 4 cut(s) | 247, 443, 1010, 1300 |
| BstX2I | RGATCY | 1 cut(s) | 238 |
| BstYI | RGATCY | 1 cut(s) | 238 |
| Bsu15I | ATCGAT | 1 cut(s) | 288 |
| BsuRI | GGCC | 2 cut(s) | 1136, 1155 |
| BsuTUI | ATCGAT | 1 cut(s) | 288 |
| BtrI | CACGTC | 1 cut(s) | 301 |
| BtsCI | GGATG | 3 cut(s) | 1421, 1534, 1547 |
| BtsIMutI | CAGTG | 3 cut(s) | 367, 832, 1477 |
| BveI | ACCTGC | 3 cut(s) | 403, 552, 797 |
| Cac8I | GCNNGC | 7 cut(s) | 81, 143, 375, 996, 1153, 1163, 1270 |
| CaiI | CAGNNNCTG | 1 cut(s) | 362 |
| CfoI | GCGC | 2 cut(s) | 79, 711 |
| Cfr13I | GGNCC | 4 cut(s) | 109, 949, 1007, 1134 |
| ClaI | ATCGAT | 1 cut(s) | 288 |
| CsiI | ACCWGGT | 1 cut(s) | 861 |
| Csp6I | GTAC | 3 cut(s) | 103, 436, 509 |
| CviQI | GTAC | 3 cut(s) | 103, 436, 509 |
| DdeI | CTNAG | 3 cut(s) | 842, 969, 1506 |
| DpnI | GATC | 3 cut(s) | 119, 240, 1170 |
| DpnII | GATC | 3 cut(s) | 117, 238, 1168 |
| DraI | TTTAAA | 2 cut(s) | 310, 1407 |
| EaeI | YGGCCR | 1 cut(s) | 1153 |
| Eam1104I | CTCTTC | 2 cut(s) | 584, 1217 |
| EarI | CTCTTC | 2 cut(s) | 584, 1217 |
| Eco130I | CCWWGG | 1 cut(s) | 1003 |
| Eco47I | GGWCC | 3 cut(s) | 109, 949, 1007 |
| Eco57I | CTGAAG | 1 cut(s) | 509 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1134 |
| EcoRII | CCWGG | 1 cut(s) | 861 |
| EcoT14I | CCWWGG | 1 cut(s) | 1003 |
| EcoT22I | ATGCAT | 3 cut(s) | 143, 1163, 1167 |
| ErhI | CCWWGG | 1 cut(s) | 1003 |
| Esp3I | CGTCTC | 1 cut(s) | 1517 |
| FaqI | GGGAC | 2 cut(s) | 49, 279 |
| FauI | CCCGC | 1 cut(s) | 256 |
| FblI | GTMKAC | 2 cut(s) | 483, 1024 |
| Fnu4HI | GCNGC | 5 cut(s) | 261, 432, 999, 1149, 1289 |
| FokI | GGATG | 3 cut(s) | 1408, 1534, 1541 |
| Fsp4HI | GCNGC | 5 cut(s) | 261, 432, 999, 1149, 1289 |
| FspBI | CTAG | 5 cut(s) | 428, 567, 995, 1011, 1082 |
| GlaI | GCGC | 2 cut(s) | 78, 710 |
| GluI | GCNGC | 5 cut(s) | 261, 432, 999, 1149, 1289 |
| GsuI | CTGGAG | 2 cut(s) | 255, 1188 |
| HaeIII | GGCC | 2 cut(s) | 1136, 1155 |
| HapII | CCGG | 2 cut(s) | 106, 718 |
| HhaI | GCGC | 2 cut(s) | 79, 711 |
| Hin6I | GCGC | 2 cut(s) | 77, 709 |
| HinP1I | GCGC | 2 cut(s) | 77, 709 |
| HincII | GTYRAC | 1 cut(s) | 1360 |
| HindII | GTYRAC | 1 cut(s) | 1360 |
| HindIII | AAGCTT | 1 cut(s) | 1116 |
| HinfI | GANTC | 5 cut(s) | 474, 611, 618, 928, 1046 |
| HpaII | CCGG | 2 cut(s) | 106, 718 |
| HphI | GGTGA | 3 cut(s) | 79, 1573, 1580 |
| Hpy166II | GTNNAC | 6 cut(s) | 191, 484, 1025, 1360, 1418, 1581 |
| Hpy188I | TCNGA | 6 cut(s) | 113, 168, 442, 457, 1318, 1600 |
| Hpy188III | TCNNGA | 9 cut(s) | 234, 253, 404, 615, 718, 1043, 1064, 1177, 1458 |
| Hpy8I | GTNNAC | 6 cut(s) | 191, 484, 1025, 1360, 1418, 1581 |
| HpyAV | CCTTC | 4 cut(s) | 377, 734, 1227, 1455 |
| HpyCH4III | ACNGT | 4 cut(s) | 163, 513, 1190, 1498 |
| HpyCH4IV | ACGT | 2 cut(s) | 300, 916 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 431, 502, 1171, 1269 |
| HpyF3I | CTNAG | 3 cut(s) | 842, 969, 1506 |
| HpySE526I | ACGT | 2 cut(s) | 300, 916 |
| HspAI | GCGC | 2 cut(s) | 77, 709 |
| Kpn2I | TCCGGA | 1 cut(s) | 717 |
| Kzo9I | GATC | 3 cut(s) | 117, 238, 1168 |
| LguI | GCTCTTC | 1 cut(s) | 1217 |
| LmnI | GCTCC | 4 cut(s) | 211, 418, 720, 1331 |
| Lsp1109I | GCAGC | 4 cut(s) | 247, 443, 1010, 1300 |
| LweI | GCATC | 5 cut(s) | 696, 762, 1275, 1519, 1556 |
| MabI | ACCWGGT | 1 cut(s) | 861 |
| MaeI | CTAG | 5 cut(s) | 428, 567, 995, 1011, 1082 |
| MaeII | ACGT | 2 cut(s) | 300, 916 |
| MaeIII | GTNAC | 4 cut(s) | 358, 664, 1428, 1437 |
| MalI | GATC | 3 cut(s) | 119, 240, 1170 |
| MboI | GATC | 3 cut(s) | 117, 238, 1168 |
| MboII | GAAGA | 7 cut(s) | 479, 553, 571, 719, 861, 899, 1234 |
| MfeI | CAATTG | 2 cut(s) | 378, 767 |
| MflI | RGATCY | 1 cut(s) | 238 |
| MhlI | GDGCHC | 2 cut(s) | 193, 343 |
| MlsI | TGGCCA | 1 cut(s) | 1155 |
| MluNI | TGGCCA | 1 cut(s) | 1155 |
| MlyI | GAGTC | 2 cut(s) | 612, 922 |
| Mox20I | TGGCCA | 1 cut(s) | 1155 |
| Mph1103I | ATGCAT | 3 cut(s) | 143, 1163, 1167 |
| MroI | TCCGGA | 1 cut(s) | 717 |
| MroXI | GAANNNNTTC | 2 cut(s) | 387, 683 |
| MscI | TGGCCA | 1 cut(s) | 1155 |
| MseI | TTAA | 7 cut(s) | 135, 195, 200, 309, 489, 501, 1406 |
| MslI | CAYNNNNRTG | 2 cut(s) | 978, 1586 |
| Msp20I | TGGCCA | 1 cut(s) | 1155 |
| MspI | CCGG | 2 cut(s) | 106, 718 |
| MspR9I | CCNGG | 2 cut(s) | 107, 863 |
| MunI | CAATTG | 2 cut(s) | 378, 767 |
| MvaI | CCWGG | 1 cut(s) | 863 |
| MvnI | CGCG | 1 cut(s) | 77 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 431, 502, 1171, 1269 |
| NciI | CCSGG | 1 cut(s) | 107 |
| NdeII | GATC | 3 cut(s) | 117, 238, 1168 |
| NheI | GCTAGC | 1 cut(s) | 994 |
| NlaIV | GGNNCC | 6 cut(s) | 110, 213, 633, 722, 951, 1135 |
| NmuCI | GTSAC | 1 cut(s) | 1428 |
| NsiI | ATGCAT | 3 cut(s) | 143, 1163, 1167 |
| NspI | RCATGY | 7 cut(s) | 145, 509, 648, 896, 1165, 1366, 1456 |
| PaeI | GCATGC | 2 cut(s) | 145, 1165 |
| PciI | ACATGT | 1 cut(s) | 1452 |
| PciSI | GCTCTTC | 1 cut(s) | 1217 |
| PdmI | GAANNNNTTC | 2 cut(s) | 387, 683 |
| PfeI | GAWTC | 3 cut(s) | 474, 611, 1046 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 628 |
| PkrI | GCNGC | 5 cut(s) | 262, 433, 1000, 1150, 1290 |
| PleI | GAGTC | 2 cut(s) | 612, 922 |
| PpsI | GAGTC | 2 cut(s) | 612, 922 |
| PscI | ACATGT | 1 cut(s) | 1452 |
| Psp6I | CCWGG | 1 cut(s) | 861 |
| PspGI | CCWGG | 1 cut(s) | 861 |
| PspN4I | GGNNCC | 6 cut(s) | 110, 213, 633, 722, 951, 1135 |
| PspPI | GGNCC | 4 cut(s) | 109, 949, 1007, 1134 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 744, 776 |
| PstNI | CAGNNNCTG | 1 cut(s) | 362 |
| PsuI | RGATCY | 1 cut(s) | 238 |
| RsaI | GTAC | 3 cut(s) | 104, 437, 510 |
| RsaNI | GTAC | 3 cut(s) | 103, 436, 509 |
| RseI | CAYNNNNRTG | 2 cut(s) | 978, 1586 |
| SapI | GCTCTTC | 1 cut(s) | 1217 |
| SaqAI | TTAA | 7 cut(s) | 135, 195, 200, 309, 489, 501, 1406 |
| SatI | GCNGC | 5 cut(s) | 261, 432, 999, 1149, 1289 |
| Sau3AI | GATC | 3 cut(s) | 117, 238, 1168 |
| Sau96I | GGNCC | 4 cut(s) | 109, 949, 1007, 1134 |
| SchI | GAGTC | 2 cut(s) | 612, 922 |
| ScrFI | CCNGG | 2 cut(s) | 107, 863 |
| SduI | GDGCHC | 2 cut(s) | 193, 343 |
| SexAI | ACCWGGT | 1 cut(s) | 861 |
| SfaNI | GCATC | 5 cut(s) | 696, 762, 1275, 1519, 1556 |
| SfcI | CTRYAG | 4 cut(s) | 171, 480, 1374, 1494 |
| SinI | GGWCC | 3 cut(s) | 109, 949, 1007 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 978, 1586 |
| SmlI | CTYRAG | 2 cut(s) | 151, 1175 |
| SmoI | CTYRAG | 2 cut(s) | 151, 1175 |
| SphI | GCATGC | 2 cut(s) | 145, 1165 |
| SsiI | CCGC | 3 cut(s) | 263, 855, 1148 |
| SspI | AATATT | 1 cut(s) | 1562 |
| SspMI | CTAG | 5 cut(s) | 428, 567, 995, 1011, 1082 |
| StyD4I | CCNGG | 2 cut(s) | 105, 861 |
| StyI | CCWWGG | 1 cut(s) | 1003 |
| TaaI | ACNGT | 4 cut(s) | 163, 513, 1190, 1498 |
| TaiI | ACGT | 2 cut(s) | 303, 919 |
| TaqI | TCGA | 2 cut(s) | 99, 288 |
| TatI | WGTACW | 1 cut(s) | 508 |
| TauI | GCSGC | 1 cut(s) | 1151 |
| TfiI | GAWTC | 3 cut(s) | 474, 611, 1046 |
| Tru1I | TTAA | 7 cut(s) | 135, 195, 200, 309, 489, 501, 1406 |
| Tru9I | TTAA | 7 cut(s) | 135, 195, 200, 309, 489, 501, 1406 |
| TscAI | CASTG | 3 cut(s) | 374, 839, 1477 |
| TseFI | GTSAC | 1 cut(s) | 1428 |
| TseI | GCWGC | 4 cut(s) | 260, 431, 998, 1288 |
| Tsp45I | GTSAC | 1 cut(s) | 1428 |
| TspDTI | ATGAA | 4 cut(s) | 926, 1113, 1128, 1358 |
| TspGWI | ACGGA | 1 cut(s) | 1541 |
| TspRI | CASTG | 3 cut(s) | 374, 839, 1477 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 628 |
| VneI | GTGCAC | 1 cut(s) | 189 |
| VpaK11BI | GGWCC | 3 cut(s) | 109, 949, 1007 |
| XapI | RAATTY | 2 cut(s) | 305, 673 |
| XceI | RCATGY | 7 cut(s) | 145, 509, 648, 896, 1165, 1366, 1456 |
| XmiI | GTMKAC | 2 cut(s) | 483, 1024 |
| XmnI | GAANNNNTTC | 2 cut(s) | 387, 683 |
| XspI | CTAG | 5 cut(s) | 428, 567, 995, 1011, 1082 |
| Zsp2I | ATGCAT | 3 cut(s) | 143, 1163, 1167 |