Prupe.4G224900_v2.0.a1

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
14152484 .. 14159321
6838 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G224900.2

Sequence Viewer

Length: 1620 bp
ATGAGCAATGTGCCTAAAGAAGCGATAGAGGTCGTAGCACAGAGCATTGGCATTTCCAATTTGTCCCCCGATGTCGCGCTTGCTCTCACCCCAGATGTCGAGTACCGGGTCCGAGAGATCATGCAGGAGGCAATTAAATGCATGCGACACTCAAGGCGAACTGTTCTGACTACAGATGATGTGGATAGTGCACTTAAATTAAGAAATGTGGAGCCGATATATGGCTTTGCCTCTGGAGATCCTTTGAGGTTCAAGAGAGCTGCGGGACATAAGGATTTGTTCTACATCGATGACAATGACGTGGAATTTAAAGATGTCATTGAAGCACCTTTACCAAGAGCACCTCTTGGTGTATCAGTTACTGCTCACTGGCTGGCAATTGAAGGCGTTCAACCTGCAATTCCAGAAAATGCTCCTATTGAAGCACTAGCAGCGTACTCTGATGTGAAAAAATCTGAATACAAGGAAGATGGAATCCCTGTAGACATTAAATTGCCTGTTAAGCATGTACTGTCAAGGGAACTTCAGCTTTACTTTGAGAAGATTACAGAGCTTACTCGCAGGTCTAGTTCCACCCTCTTCAAAGAAGCATTAGTCAGCTTGGCAACAGATTCAGGACTCCATGCGTTGGTTCCTTACTTCACATGCTTTATTGCTGATGAGGTTACAAGGAATTTGAATAGTTTCCCCCTCCTATTTGCTTTGATGCGCCTTGTCCGGAGCCTTCTTCAAAATCCTCACATACATATTGAACCTTATCTACAACAATTGATGCCATCTGTTATTACCTGCCTTGTTGCCAAAAGATTAGGGAATAGATATACTGACAATCACTGGGAACTTAGAAACTTTACCGCAAACCTGGTTTCTTCAATTTGCAAAAGATTTGGGCATGTTTATCACAATCTTCAACCACGTTTGACAAGGACTCTGCTTCATGCTTTCTTGGACCCAACAAAAACATTACCTCAGCATTATGGTGCAATTCAAGGGCTAGCAGCCCTTGGTCCTAGTGTGGTTCGTCTACTTATACTACCAAATCTTGATTCGTATATGCAACTTCTTGAACCAGAAATGATACTAGAGAAGCCAAAGAATGAAATAAAGAGGCATGAAGCTTGGCGTGTCTATGGGGCCTTGCTGAAAGCGGCTGGCCAATGCATGCATGATCGGCTCAAGATGTTCCACAGTTTGTTGTCTCCTCCAGCTCATGCCATTTGGAAGAGCAAGGGAAGGGTTGCGACAACAATGACAAATAAACGCAAAGCAAGCACAGACAACTTGATGCAGCAACCACCACTCAAAAAATTAGCTTCCGATGGCACAGGGGGAGCAATGCCAATGAACTCCATGCAAGTTGACATGCAAGGGGCTGTAGGTGGATTTTCCTCATCTGTTGGGGGTTTAAATGTTGGTTTACCATCCATGTCACACCAGTTACCAAAGGAACACATGTCAGGAAGGGAGGTCAGTGGTCAAATGGTAAAGGGTTCTACAGTTCTTGCTCAGGCGTGGAAAGAGGAGACGGATGCAGGACATTTACTGGCATCCCTGTTTGAATATTTTGGTGAAAGTGTGTTCACCTTTATGCCCAAATCAGAGTTGTCTCTTTTCCTGTGA

Protein Analysis

540

Amino Acids

60.05

Weight (kDa)

8.4

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 403, 552, 797
AccB7I CCANNNNNTGG 1 cut(s) 628
AccI GTMKAC 2 cut(s) 483, 1024
AccII CGCG 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 717
AciI CCGC 3 cut(s) 263, 855, 1148
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 1153
AcsI RAATTY 2 cut(s) 305, 673
AcuI CTGAAG 1 cut(s) 509
AfaI GTAC 3 cut(s) 104, 437, 510
AfiI CCNNNNNNNGG 2 cut(s) 221, 628
AflIII ACRYGT 1 cut(s) 1452
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 2 cut(s) 1030, 1062
AluBI AGCT 7 cut(s) 260, 529, 553, 600, 1118, 1208, 1313
AluI AGCT 7 cut(s) 260, 529, 553, 600, 1118, 1208, 1313
Alw21I GWGCWC 2 cut(s) 193, 343
Alw26I GTCTC 3 cut(s) 1203, 1517, 1611
Alw44I GTGCAC 1 cut(s) 189
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 717
AoxI GGCC 2 cut(s) 1134, 1153
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 4 cut(s) 260, 431, 998, 1288
ApoI RAATTY 2 cut(s) 305, 673
Asp700I GAANNNNTTC 2 cut(s) 387, 683
AspLEI GCGC 2 cut(s) 79, 711
AspS9I GGNCC 4 cut(s) 109, 949, 1007, 1134
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 3 cut(s) 79, 1573, 1580
AsuNHI GCTAGC 1 cut(s) 994
AvaII GGWCC 3 cut(s) 109, 949, 1007
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 1155
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
Bbv12I GWGCWC 2 cut(s) 193, 343
BbvCI CCTCAGC 1 cut(s) 969
BbvI GCAGC 4 cut(s) 247, 443, 1010, 1300
BccI CCATC 4 cut(s) 464, 784, 1313, 1429
BciT130I CCWGG 1 cut(s) 863
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 3 cut(s) 1203, 1517, 1611
BfaI CTAG 5 cut(s) 428, 567, 995, 1011, 1082
BfmI CTRYAG 4 cut(s) 171, 480, 1374, 1494
BfuAI ACCTGC 3 cut(s) 403, 552, 797
BisI GCNGC 5 cut(s) 261, 432, 999, 1149, 1289
BlsI GCNGC 5 cut(s) 262, 433, 1000, 1150, 1290
Bme1390I CCNGG 2 cut(s) 107, 863
Bme18I GGWCC 3 cut(s) 109, 949, 1007
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 4 cut(s) 109, 949, 1007, 1134
BmiI GGNNCC 6 cut(s) 110, 213, 633, 722, 951, 1135
BmrFI CCNGG 2 cut(s) 107, 863
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 5 cut(s) 696, 762, 1275, 1519, 1556
BmtI GCTAGC 1 cut(s) 998
BmuI ACTGGG 1 cut(s) 844
BpmI CTGGAG 2 cut(s) 255, 1188
Bpu10I CCTNAGC 2 cut(s) 969, 1506
BpuEI CTTGAG 2 cut(s) 136, 1160
BpuMI CCSGG 1 cut(s) 107
Bsa29I ATCGAT 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 1003
BsaWI WCCGGW 1 cut(s) 717
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 628
Bse1I ACTGG 4 cut(s) 374, 839, 1435, 1548
Bse3DI GCAATG 2 cut(s) 13, 1341
BseAI TCCGGA 1 cut(s) 717
BseBI CCWGG 1 cut(s) 863
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 1003
BseGI GGATG 3 cut(s) 1421, 1534, 1547
BseLI CCNNNNNNNGG 2 cut(s) 221, 628
BseMI GCAATG 2 cut(s) 13, 1341
BseMII CTCAG 2 cut(s) 983, 1520
BseNI ACTGG 4 cut(s) 374, 839, 1435, 1548
BseRI GAGGAG 2 cut(s) 1191, 1535
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 4 cut(s) 247, 443, 1010, 1300
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 1136, 1155
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 193, 343
BsiSI CCGG 2 cut(s) 106, 718
BslFI GGGAC 2 cut(s) 49, 279
BslI CCNNNNNNNGG 2 cut(s) 221, 628
BsmAI GTCTC 3 cut(s) 1203, 1517, 1611
BsmBI CGTCTC 1 cut(s) 1517
BsmFI GGGAC 2 cut(s) 49, 279
BsnI GGCC 2 cut(s) 1136, 1155
Bsp1286I GDGCHC 2 cut(s) 193, 343
Bsp13I TCCGGA 1 cut(s) 717
Bsp143I GATC 3 cut(s) 117, 238, 1168
BspACI CCGC 3 cut(s) 263, 855, 1148
BspANI GGCC 2 cut(s) 1136, 1155
BspCNI CTCAG 2 cut(s) 982, 1519
BspDI ATCGAT 1 cut(s) 288
BspEI TCCGGA 1 cut(s) 717
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 6 cut(s) 110, 213, 633, 722, 951, 1135
BspMI ACCTGC 3 cut(s) 403, 552, 797
BspOI GCTAGC 1 cut(s) 998
BspPI GGATC 1 cut(s) 233
BspQI GCTCTTC 1 cut(s) 1217
BsrDI GCAATG 2 cut(s) 13, 1341
BsrI ACTGG 4 cut(s) 374, 839, 1435, 1548
BssECI CCNNGG 1 cut(s) 1003
BssMI GATC 3 cut(s) 117, 238, 1168
BssT1I CCWWGG 1 cut(s) 1003
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 4 cut(s) 163, 513, 1190, 1498
Bst6I CTCTTC 2 cut(s) 584, 1217
BstC8I GCNNGC 7 cut(s) 81, 143, 375, 996, 1153, 1163, 1270
BstDEI CTNAG 3 cut(s) 842, 969, 1506
BstF5I GGATG 3 cut(s) 1421, 1534, 1547
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 79, 711
BstKTI GATC 3 cut(s) 120, 241, 1171
BstMAI GTCTC 3 cut(s) 1203, 1517, 1611
BstMBI GATC 3 cut(s) 117, 238, 1168
BstMWI GCNNNNNNNGC 4 cut(s) 431, 502, 1171, 1269
BstNI CCWGG 1 cut(s) 863
BstNSI RCATGY 7 cut(s) 145, 509, 648, 896, 1165, 1366, 1456
BstSCI CCNGG 2 cut(s) 105, 861
BstSFI CTRYAG 4 cut(s) 171, 480, 1374, 1494
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 4 cut(s) 247, 443, 1010, 1300
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 2 cut(s) 1136, 1155
BsuTUI ATCGAT 1 cut(s) 288
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 3 cut(s) 1421, 1534, 1547
BtsIMutI CAGTG 3 cut(s) 367, 832, 1477
BveI ACCTGC 3 cut(s) 403, 552, 797
Cac8I GCNNGC 7 cut(s) 81, 143, 375, 996, 1153, 1163, 1270
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 2 cut(s) 79, 711
Cfr13I GGNCC 4 cut(s) 109, 949, 1007, 1134
ClaI ATCGAT 1 cut(s) 288
CsiI ACCWGGT 1 cut(s) 861
Csp6I GTAC 3 cut(s) 103, 436, 509
CviQI GTAC 3 cut(s) 103, 436, 509
DdeI CTNAG 3 cut(s) 842, 969, 1506
DpnI GATC 3 cut(s) 119, 240, 1170
DpnII GATC 3 cut(s) 117, 238, 1168
DraI TTTAAA 2 cut(s) 310, 1407
EaeI YGGCCR 1 cut(s) 1153
Eam1104I CTCTTC 2 cut(s) 584, 1217
EarI CTCTTC 2 cut(s) 584, 1217
Eco130I CCWWGG 1 cut(s) 1003
Eco47I GGWCC 3 cut(s) 109, 949, 1007
Eco57I CTGAAG 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 1134
EcoRII CCWGG 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 1003
EcoT22I ATGCAT 3 cut(s) 143, 1163, 1167
ErhI CCWWGG 1 cut(s) 1003
Esp3I CGTCTC 1 cut(s) 1517
FaqI GGGAC 2 cut(s) 49, 279
FauI CCCGC 1 cut(s) 256
FblI GTMKAC 2 cut(s) 483, 1024
Fnu4HI GCNGC 5 cut(s) 261, 432, 999, 1149, 1289
FokI GGATG 3 cut(s) 1408, 1534, 1541
Fsp4HI GCNGC 5 cut(s) 261, 432, 999, 1149, 1289
FspBI CTAG 5 cut(s) 428, 567, 995, 1011, 1082
GlaI GCGC 2 cut(s) 78, 710
GluI GCNGC 5 cut(s) 261, 432, 999, 1149, 1289
GsuI CTGGAG 2 cut(s) 255, 1188
HaeIII GGCC 2 cut(s) 1136, 1155
HapII CCGG 2 cut(s) 106, 718
HhaI GCGC 2 cut(s) 79, 711
Hin6I GCGC 2 cut(s) 77, 709
HinP1I GCGC 2 cut(s) 77, 709
HincII GTYRAC 1 cut(s) 1360
HindII GTYRAC 1 cut(s) 1360
HindIII AAGCTT 1 cut(s) 1116
HinfI GANTC 5 cut(s) 474, 611, 618, 928, 1046
HpaII CCGG 2 cut(s) 106, 718
HphI GGTGA 3 cut(s) 79, 1573, 1580
Hpy166II GTNNAC 6 cut(s) 191, 484, 1025, 1360, 1418, 1581
Hpy188I TCNGA 6 cut(s) 113, 168, 442, 457, 1318, 1600
Hpy188III TCNNGA 9 cut(s) 234, 253, 404, 615, 718, 1043, 1064, 1177, 1458
Hpy8I GTNNAC 6 cut(s) 191, 484, 1025, 1360, 1418, 1581
HpyAV CCTTC 4 cut(s) 377, 734, 1227, 1455
HpyCH4III ACNGT 4 cut(s) 163, 513, 1190, 1498
HpyCH4IV ACGT 2 cut(s) 300, 916
HpyF10VI GCNNNNNNNGC 4 cut(s) 431, 502, 1171, 1269
HpyF3I CTNAG 3 cut(s) 842, 969, 1506
HpySE526I ACGT 2 cut(s) 300, 916
HspAI GCGC 2 cut(s) 77, 709
Kpn2I TCCGGA 1 cut(s) 717
Kzo9I GATC 3 cut(s) 117, 238, 1168
LguI GCTCTTC 1 cut(s) 1217
LmnI GCTCC 4 cut(s) 211, 418, 720, 1331
Lsp1109I GCAGC 4 cut(s) 247, 443, 1010, 1300
LweI GCATC 5 cut(s) 696, 762, 1275, 1519, 1556
MabI ACCWGGT 1 cut(s) 861
MaeI CTAG 5 cut(s) 428, 567, 995, 1011, 1082
MaeII ACGT 2 cut(s) 300, 916
MaeIII GTNAC 4 cut(s) 358, 664, 1428, 1437
MalI GATC 3 cut(s) 119, 240, 1170
MboI GATC 3 cut(s) 117, 238, 1168
MboII GAAGA 7 cut(s) 479, 553, 571, 719, 861, 899, 1234
MfeI CAATTG 2 cut(s) 378, 767
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 193, 343
MlsI TGGCCA 1 cut(s) 1155
MluNI TGGCCA 1 cut(s) 1155
MlyI GAGTC 2 cut(s) 612, 922
Mox20I TGGCCA 1 cut(s) 1155
Mph1103I ATGCAT 3 cut(s) 143, 1163, 1167
MroI TCCGGA 1 cut(s) 717
MroXI GAANNNNTTC 2 cut(s) 387, 683
MscI TGGCCA 1 cut(s) 1155
MseI TTAA 7 cut(s) 135, 195, 200, 309, 489, 501, 1406
MslI CAYNNNNRTG 2 cut(s) 978, 1586
Msp20I TGGCCA 1 cut(s) 1155
MspI CCGG 2 cut(s) 106, 718
MspR9I CCNGG 2 cut(s) 107, 863
MunI CAATTG 2 cut(s) 378, 767
MvaI CCWGG 1 cut(s) 863
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 4 cut(s) 431, 502, 1171, 1269
NciI CCSGG 1 cut(s) 107
NdeII GATC 3 cut(s) 117, 238, 1168
NheI GCTAGC 1 cut(s) 994
NlaIV GGNNCC 6 cut(s) 110, 213, 633, 722, 951, 1135
NmuCI GTSAC 1 cut(s) 1428
NsiI ATGCAT 3 cut(s) 143, 1163, 1167
NspI RCATGY 7 cut(s) 145, 509, 648, 896, 1165, 1366, 1456
PaeI GCATGC 2 cut(s) 145, 1165
PciI ACATGT 1 cut(s) 1452
PciSI GCTCTTC 1 cut(s) 1217
PdmI GAANNNNTTC 2 cut(s) 387, 683
PfeI GAWTC 3 cut(s) 474, 611, 1046
PflMI CCANNNNNTGG 1 cut(s) 628
PkrI GCNGC 5 cut(s) 262, 433, 1000, 1150, 1290
PleI GAGTC 2 cut(s) 612, 922
PpsI GAGTC 2 cut(s) 612, 922
PscI ACATGT 1 cut(s) 1452
Psp6I CCWGG 1 cut(s) 861
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 6 cut(s) 110, 213, 633, 722, 951, 1135
PspPI GGNCC 4 cut(s) 109, 949, 1007, 1134
PsrI GAACNNNNNNTAC 2 cut(s) 744, 776
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 3 cut(s) 104, 437, 510
RsaNI GTAC 3 cut(s) 103, 436, 509
RseI CAYNNNNRTG 2 cut(s) 978, 1586
SapI GCTCTTC 1 cut(s) 1217
SaqAI TTAA 7 cut(s) 135, 195, 200, 309, 489, 501, 1406
SatI GCNGC 5 cut(s) 261, 432, 999, 1149, 1289
Sau3AI GATC 3 cut(s) 117, 238, 1168
Sau96I GGNCC 4 cut(s) 109, 949, 1007, 1134
SchI GAGTC 2 cut(s) 612, 922
ScrFI CCNGG 2 cut(s) 107, 863
SduI GDGCHC 2 cut(s) 193, 343
SexAI ACCWGGT 1 cut(s) 861
SfaNI GCATC 5 cut(s) 696, 762, 1275, 1519, 1556
SfcI CTRYAG 4 cut(s) 171, 480, 1374, 1494
SinI GGWCC 3 cut(s) 109, 949, 1007
SmiMI CAYNNNNRTG 2 cut(s) 978, 1586
SmlI CTYRAG 2 cut(s) 151, 1175
SmoI CTYRAG 2 cut(s) 151, 1175
SphI GCATGC 2 cut(s) 145, 1165
SsiI CCGC 3 cut(s) 263, 855, 1148
SspI AATATT 1 cut(s) 1562
SspMI CTAG 5 cut(s) 428, 567, 995, 1011, 1082
StyD4I CCNGG 2 cut(s) 105, 861
StyI CCWWGG 1 cut(s) 1003
TaaI ACNGT 4 cut(s) 163, 513, 1190, 1498
TaiI ACGT 2 cut(s) 303, 919
TaqI TCGA 2 cut(s) 99, 288
TatI WGTACW 1 cut(s) 508
TauI GCSGC 1 cut(s) 1151
TfiI GAWTC 3 cut(s) 474, 611, 1046
Tru1I TTAA 7 cut(s) 135, 195, 200, 309, 489, 501, 1406
Tru9I TTAA 7 cut(s) 135, 195, 200, 309, 489, 501, 1406
TscAI CASTG 3 cut(s) 374, 839, 1477
TseFI GTSAC 1 cut(s) 1428
TseI GCWGC 4 cut(s) 260, 431, 998, 1288
Tsp45I GTSAC 1 cut(s) 1428
TspDTI ATGAA 4 cut(s) 926, 1113, 1128, 1358
TspGWI ACGGA 1 cut(s) 1541
TspRI CASTG 3 cut(s) 374, 839, 1477
Van91I CCANNNNNTGG 1 cut(s) 628
VneI GTGCAC 1 cut(s) 189
VpaK11BI GGWCC 3 cut(s) 109, 949, 1007
XapI RAATTY 2 cut(s) 305, 673
XceI RCATGY 7 cut(s) 145, 509, 648, 896, 1165, 1366, 1456
XmiI GTMKAC 2 cut(s) 483, 1024
XmnI GAANNNNTTC 2 cut(s) 387, 683
XspI CTAG 5 cut(s) 428, 567, 995, 1011, 1082
Zsp2I ATGCAT 3 cut(s) 143, 1163, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.