Rh5CG320200

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
35496450 .. 35499418
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG320200.1

Sequence Viewer

Length: 1017 bp
ATGCAGGAGGCCATCAAATGCATGCGACAGTCGAGATGGACTGTTCTGACAACCGATGATGTGGATCACGCACTTAAATTAAGAAATGTGGAGCCAATATATGGCTTTGGTTCTGGAGATCCTTTGGGATTCAAGAGAGCTGCTGGACATAGGGATTTGTTCTGCATAGATGACAAGGATGTTGAATTTAAAGATGTGATTGAGGCACCTTTGCCAAAAGCACCATTTGATGTATCCGTTACTGCTCACTGGCTGGCAATCGAAGGTTTTCAACCTGCAATTCCAGAAAATGCTCCAGTTGAAGCGCTTGCTGTATACTCTGATGTCAAAAAATCTGAATACAAGGAAGATGGACTTCCTGTAGTCGTTAAATTGCCCATTAAGCATGTACTATCAAGGGAACTTCAGCTTTACTTTGAGAAGATCATAGGGCTCAATCAAAGGTCTAGCTCAACCCTTTTTGAAGAAGCATTAGTGAGCTTGGCAACAGATTCAGGGCTCCATCCGTTGGTTACACGCAATTTGAATAATTTTCTCCTCCTAGTTGCTTTAATGCGTCTTGTCCGGAGCCTTCTTCAAAATCCTCACATACATGTTGAACCTTATCTACACCAATTGATGCCTTCTGTTCTTACCTGCCTTGTTGCAAAAAGACTAGGGAATAGATATACTGACAATCACTGGGACCTTAGAAACCTTACTGCCAACCTGGTTTCTTCAATCTGCAAAAGATTTAGACATTTTTGTCATAATCTTCAGCCACGTTTGACAAGGACCTTGCTTCACGCTTTCTTGGACCCAACCAAAGCATTACCCCAACATTATGGCGCAATTCAAGGGCTAGCAGCTCTTGGTCCCAATGTGGTTCGCTTACTTATACTACCAAATCTCGATTCGTATATGCAACTTCTTGAGCCAGAAATGATACTTGAGAAGCAAAAGAATGAGATAAAGAGGCATGAAGCTTGGCGTGTCTATGGGGCCTTTGCTGCGTGCGGCTGGCCAATGCATGCATGA

Protein Analysis

338

Amino Acids

38.37

Weight (kDa)

8.17

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF PF02969 1 - 26 2.1e-06 TATA box binding protein associated factor (TAF)
TAF6_C PF07571 128 - 297 3.4e-60 TAF6 C-terminal HEAT repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 744
Acc36I ACCTGC 2 cut(s) 283, 644
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 2 cut(s) 101, 508
AccI GTMKAC 1 cut(s) 315
AccIII TCCGGA 1 cut(s) 564
AciI CCGC 1 cut(s) 996
AclWI GGATC 2 cut(s) 72, 113
AcoI YGGCCR 1 cut(s) 1001
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 389, 740
AfaI GTAC 1 cut(s) 390
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 101, 508
AflIII ACRYGT 1 cut(s) 592
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 877, 909
AluBI AGCT 6 cut(s) 140, 409, 450, 480, 848, 965
AluI AGCT 6 cut(s) 140, 409, 450, 480, 848, 965
AlwI GGATC 2 cut(s) 72, 113
Aor13HI TCCGGA 1 cut(s) 564
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 3 cut(s) 9, 981, 1001
ApeKI GCWGC 3 cut(s) 140, 845, 989
ApoI RAATTY 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 2 cut(s) 307, 830
AspS9I GGNCC 5 cut(s) 685, 774, 796, 854, 981
AsuNHI GCTAGC 1 cut(s) 841
AvaII GGWCC 4 cut(s) 685, 774, 796, 854
BalI TGGCCA 1 cut(s) 1003
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 2 cut(s) 435, 501
BbvI GCAGC 3 cut(s) 127, 857, 976
BccI CCATC 4 cut(s) 20, 30, 344, 510
BciT130I CCWGG 1 cut(s) 710
BciVI GTATCC 1 cut(s) 244
BfaI CTAG 4 cut(s) 447, 542, 656, 842
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 308
BfuAI ACCTGC 2 cut(s) 283, 644
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 4 cut(s) 141, 846, 990, 997
BlsI GCNGC 4 cut(s) 142, 847, 991, 998
Bme1390I CCNGG 1 cut(s) 710
Bme18I GGWCC 4 cut(s) 685, 774, 796, 854
BmgT120I GGNCC 5 cut(s) 685, 774, 796, 854, 981
BmiI GGNNCC 8 cut(s) 93, 207, 500, 569, 686, 798, 856, 982
BmrFI CCNGG 1 cut(s) 710
BmrI ACTGGG 1 cut(s) 691
BmsI GCATC 1 cut(s) 609
BmtI GCTAGC 1 cut(s) 845
BmuI ACTGGG 1 cut(s) 691
BpmI CTGGAG 2 cut(s) 135, 279
BpuEI CTTGAG 2 cut(s) 932, 950
BsaBI GATNNNNATC 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 564
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 508
Bse1I ACTGG 3 cut(s) 254, 296, 686
Bse8I GATNNNNATC 1 cut(s) 63
BseAI TCCGGA 1 cut(s) 564
BseBI CCWGG 1 cut(s) 710
BseGI GGATG 2 cut(s) 184, 502
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 101, 508
BseNI ACTGG 3 cut(s) 254, 296, 686
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 3 cut(s) 127, 857, 976
BshFI GGCC 3 cut(s) 11, 983, 1003
BshNI GGYRCC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 565
BslFI GGGAC 2 cut(s) 698, 840
BslI CCNNNNNNNGG 2 cut(s) 101, 508
BsmFI GGGAC 2 cut(s) 698, 840
BsnI GGCC 3 cut(s) 11, 983, 1003
Bsp1286I GDGCHC 2 cut(s) 435, 501
Bsp13I TCCGGA 1 cut(s) 564
Bsp143I GATC 3 cut(s) 64, 118, 423
BspACI CCGC 1 cut(s) 996
BspANI GGCC 3 cut(s) 11, 983, 1003
BspEI TCCGGA 1 cut(s) 564
BspLI GGNNCC 8 cut(s) 93, 207, 500, 569, 686, 798, 856, 982
BspMI ACCTGC 2 cut(s) 283, 644
BspOI GCTAGC 1 cut(s) 845
BspPI GGATC 2 cut(s) 72, 113
BspT107I GGYRCC 1 cut(s) 205
BsrI ACTGG 3 cut(s) 254, 296, 686
BssMI GATC 3 cut(s) 64, 118, 423
BssNAI GTATAC 1 cut(s) 316
Bst1107I GTATAC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 30, 43
BstC8I GCNNGC 7 cut(s) 23, 255, 309, 843, 994, 1001, 1011
BstDEI CTNAG 1 cut(s) 689
BstF5I GGATG 2 cut(s) 184, 502
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 2 cut(s) 307, 830
BstKTI GATC 3 cut(s) 67, 121, 426
BstMBI GATC 3 cut(s) 64, 118, 423
BstMWI GCNNNNNNNGC 2 cut(s) 382, 989
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 4 cut(s) 25, 389, 596, 1013
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 3 cut(s) 127, 857, 976
BstX2I RGATCY 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 824
BstYI RGATCY 1 cut(s) 118
BstZ17I GTATAC 1 cut(s) 316
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 3 cut(s) 11, 983, 1003
BtsCI GGATG 2 cut(s) 184, 502
BtsIMutI CAGTG 2 cut(s) 247, 679
BveI ACCTGC 2 cut(s) 283, 644
Cac8I GCNNGC 7 cut(s) 23, 255, 309, 843, 994, 1001, 1011
CfoI GCGC 2 cut(s) 307, 830
Cfr13I GGNCC 5 cut(s) 685, 774, 796, 854, 981
CseI GACGC 1 cut(s) 545
CsiI ACCWGGT 1 cut(s) 708
Csp6I GTAC 1 cut(s) 389
CviAII CATG 6 cut(s) 22, 386, 593, 959, 1010, 1014
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 1 cut(s) 689
DpnI GATC 3 cut(s) 66, 120, 425
DpnII GATC 3 cut(s) 64, 118, 423
DraI TTTAAA 1 cut(s) 190
DrdI GACNNNNNNGTC 1 cut(s) 744
DseDI GACNNNNNNGTC 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 1001
Eco24I GRGCYC 2 cut(s) 435, 501
Eco47I GGWCC 4 cut(s) 685, 774, 796, 854
Eco47III AGCGCT 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 389, 740
EcoO109I RGGNCCY 3 cut(s) 685, 774, 981
EcoRII CCWGG 1 cut(s) 708
EcoT22I ATGCAT 3 cut(s) 23, 1011, 1015
EcoT38I GRGCYC 2 cut(s) 435, 501
FaeI CATG 6 cut(s) 25, 389, 596, 962, 1013, 1017
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 2 cut(s) 698, 840
FatI CATG 6 cut(s) 21, 385, 592, 958, 1009, 1013
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 141, 846, 990, 997
FokI GGATG 2 cut(s) 191, 489
FriOI GRGCYC 2 cut(s) 435, 501
Fsp4HI GCNGC 4 cut(s) 141, 846, 990, 997
FspBI CTAG 4 cut(s) 447, 542, 656, 842
GlaI GCGC 2 cut(s) 306, 829
GluI GCNGC 4 cut(s) 141, 846, 990, 997
GsuI CTGGAG 2 cut(s) 135, 279
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 3 cut(s) 11, 983, 1003
HapII CCGG 1 cut(s) 565
HgaI GACGC 1 cut(s) 545
HhaI GCGC 2 cut(s) 307, 830
Hin1II CATG 6 cut(s) 25, 389, 596, 962, 1013, 1017
Hin6I GCGC 2 cut(s) 305, 828
HinP1I GCGC 2 cut(s) 305, 828
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 3 cut(s) 129, 491, 893
HpaII CCGG 1 cut(s) 565
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 3 cut(s) 48, 322, 337
Hpy188III TCNNGA 7 cut(s) 33, 114, 133, 284, 565, 890, 911
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 3 cut(s) 257, 581, 633
HpyCH4III ACNGT 2 cut(s) 30, 43
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 9 cut(s) 4, 21, 165, 278, 647, 726, 904, 1009, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 989
HpyF3I CTNAG 1 cut(s) 689
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 6 cut(s) 25, 389, 596, 962, 1013, 1017
HspAI GCGC 2 cut(s) 305, 828
Kpn2I TCCGGA 1 cut(s) 564
Kzo9I GATC 3 cut(s) 64, 118, 423
LmnI GCTCC 4 cut(s) 91, 298, 504, 567
Lsp1109I GCAGC 3 cut(s) 127, 857, 976
LweI GCATC 1 cut(s) 609
MabI ACCWGGT 1 cut(s) 708
MaeI CTAG 4 cut(s) 447, 542, 656, 842
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 2 cut(s) 238, 511
MalI GATC 3 cut(s) 66, 120, 425
MboI GATC 3 cut(s) 64, 118, 423
MboII GAAGA 6 cut(s) 359, 433, 476, 566, 708, 746
MfeI CAATTG 1 cut(s) 614
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 435, 501
MlsI TGGCCA 1 cut(s) 1003
MluCI AATT 8 cut(s) 77, 185, 279, 371, 520, 529, 614, 831
MluNI TGGCCA 1 cut(s) 1003
MnlI CCTC 4 cut(s) 196, 548, 594, 948
Mox20I TGGCCA 1 cut(s) 1003
Mph1103I ATGCAT 3 cut(s) 23, 1011, 1015
MroI TCCGGA 1 cut(s) 564
MroXI GAANNNNTTC 1 cut(s) 267
MscI TGGCCA 1 cut(s) 1003
MseI TTAA 6 cut(s) 75, 80, 189, 369, 381, 551
MslI CAYNNNNRTG 1 cut(s) 591
Msp20I TGGCCA 1 cut(s) 1003
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 1 cut(s) 710
MunI CAATTG 1 cut(s) 614
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 2 cut(s) 382, 989
NdeII GATC 3 cut(s) 64, 118, 423
NheI GCTAGC 1 cut(s) 841
NlaIII CATG 6 cut(s) 25, 389, 596, 962, 1013, 1017
NlaIV GGNNCC 8 cut(s) 93, 207, 500, 569, 686, 798, 856, 982
NsiI ATGCAT 3 cut(s) 23, 1011, 1015
NspI RCATGY 4 cut(s) 25, 389, 596, 1013
PaeI GCATGC 2 cut(s) 25, 1013
PciI ACATGT 1 cut(s) 592
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 3 cut(s) 129, 491, 893
PflMI CCANNNNNTGG 2 cut(s) 101, 508
PkrI GCNGC 4 cut(s) 142, 847, 991, 998
PpuMI RGGWCCY 2 cut(s) 685, 774
PscI ACATGT 1 cut(s) 592
Psp5II RGGWCCY 2 cut(s) 685, 774
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 8 cut(s) 93, 207, 500, 569, 686, 798, 856, 982
PspPI GGNCC 5 cut(s) 685, 774, 796, 854, 981
PspPPI RGGWCCY 2 cut(s) 685, 774
PsrI GAACNNNNNNTAC 2 cut(s) 591, 623
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 591
SaqAI TTAA 6 cut(s) 75, 80, 189, 369, 381, 551
SatI GCNGC 4 cut(s) 141, 846, 990, 997
Sau3AI GATC 3 cut(s) 64, 118, 423
Sau96I GGNCC 5 cut(s) 685, 774, 796, 854, 981
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 2 cut(s) 435, 501
SexAI ACCWGGT 1 cut(s) 708
SfaNI GCATC 1 cut(s) 609
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 4 cut(s) 685, 774, 796, 854
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 2 cut(s) 911, 929
SmoI CTYRAG 2 cut(s) 911, 929
SphI GCATGC 2 cut(s) 25, 1013
Sse9I AATT 8 cut(s) 77, 185, 279, 371, 520, 529, 614, 831
SsiI CCGC 1 cut(s) 996
SspMI CTAG 4 cut(s) 447, 542, 656, 842
StyD4I CCNGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 30, 43
TaiI ACGT 1 cut(s) 766
TaqI TCGA 3 cut(s) 32, 261, 891
TasI AATT 8 cut(s) 77, 185, 279, 371, 520, 529, 614, 831
TatI WGTACW 1 cut(s) 388
TauI GCSGC 1 cut(s) 999
TfiI GAWTC 3 cut(s) 129, 491, 893
Tru1I TTAA 6 cut(s) 75, 80, 189, 369, 381, 551
Tru9I TTAA 6 cut(s) 75, 80, 189, 369, 381, 551
TscAI CASTG 2 cut(s) 254, 686
TseI GCWGC 3 cut(s) 140, 845, 989
TspDTI ATGAA 1 cut(s) 975
TspGWI ACGGA 2 cut(s) 226, 495
TspRI CASTG 2 cut(s) 254, 686
Van91I CCANNNNNTGG 2 cut(s) 101, 508
VpaK11BI GGWCC 4 cut(s) 685, 774, 796, 854
XapI RAATTY 1 cut(s) 185
XceI RCATGY 4 cut(s) 25, 389, 596, 1013
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 4 cut(s) 447, 542, 656, 842
Zsp2I ATGCAT 3 cut(s) 23, 1011, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.