Rorug02G0460700

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
59263404 .. 59263592
189 bp
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UTR
Exon/CDS
Intron
Rorug02G0460700.1

Sequence Viewer

Length: 189 bp
ATGGCTTCAATAGATGCCATCACTGCCAGTTTTGCGGCCTCTCTGGCTCTTGCTAGAGGGGGTAAATCCCCGGATCAGGGGAAGATTGGAGAAGGTCTTGTTCATCCATCTTCTCAATCTTTTCTTCTGGGGAAACCTCTCACCCGTAAACCTATTTACTCTAATTCTTTCAAATCACATCTCTTCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.5

Weight (kDa)

9.99

Isoelectric Point (pI)

22.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 76, 77
AgsI TTSAA 2 cut(s) 9, 172
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 133
BccI CCATC 2 cut(s) 26, 115
BcnI CCSGG 1 cut(s) 71
BfaI CTAG 2 cut(s) 54, 187
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 4
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 77
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 76, 77
BseNI ACTGG 1 cut(s) 27
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 76, 77
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 38
BspPI GGATC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 73
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstSCI CCNGG 1 cut(s) 69
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
CviJI RGCY 3 cut(s) 5, 38, 47
CviKI_1 RGCY 3 cut(s) 5, 38, 47
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 54, 187
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 71
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 29, 40, 62, 84, 113
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 54, 187
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 4 cut(s) 94, 102, 116, 175
MluCI AATT 1 cut(s) 163
MnlI CCTC 3 cut(s) 49, 50, 147
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 73
PkrI GCNGC 1 cut(s) 37
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 71
SetI ASST 3 cut(s) 97, 139, 154
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 35
SspMI CTAG 2 cut(s) 54, 187
StyD4I CCNGG 1 cut(s) 69
TasI AATT 1 cut(s) 163
TauI GCSGC 1 cut(s) 38
TscAI CASTG 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 28
XspI CTAG 2 cut(s) 54, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.