Rmu_sc0000195.1_g000015

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000195.1
OG0000796
Physical Location & Seq
Reverse (-)
35319 .. 39159
3841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000195.1_g000015.1.cds

Sequence Viewer

Length: 1293 bp
atgagcattgtgcccaaagagaacattgaagtaatctcacagagcattgggatcaacaatttgtctccagatgtagctctcgctctcgcccctgacgtcgaatatcgcctccgtgagatcatgcaggaggctatcaaatgtatgcgtcactcgaggagaactaaattgacagctgatgatgtcgatggtgcactcaatttaagaaatgtcgagccactatatggttttgtgtctggaggccccttgcgtttcaaaaaagcagttggacatagggatttgttttacattgatgacaaggatgtggatttcaaagatgtgatcgaagctcctttaccaaaagccccacttgatgctggacttgtttgtcactggctagcaatagaaggtgttcaacctgcaattccagaaaatgcacctgtagaagtacttgcagctccttctgatggcaaaaagtatgagcaaaaggatgatggacttcctgttgagcttaaattaccggttaagcatgtattgtctagagagcttcagctatattttgacaaaatcactgagcttgtcgtgagtaggtccgatgttactcttcttaaaaaagcactgttgagcttggcgactgattcgggacttcatccattagttccttatttcacatgctttatagctgatgaggtttctcgtggtttgagtgattttccacttctatttgctctgatgcgagttgttcatagccttctccagaatactcacatacacattgaaccttatctacaccaattgatgccatctgtagttacttgccttgttgcaaaaagattgggcaacaggtttgctgacaaccattgggaacttagagacttcacggcgaatctggttgcttcaatttgtaaaaggtttgggcatgtctataatactctccagtcacgacttacaaaaactttggtcaatgcatttttggacccaaaacgcaccttgactcaacactacggtgcaattcaaggtttagctgctctagggcccagtgtggttcgccttctgatactgccaaatctggagtcatatctgcgacttctggaaccagagctgcttcttgagaagcaaaagaatgagataaagaggcatgaagcttggcgtgtttacggagccttgttgagtgcggcagggcaatgcatatatgatagactgaagatcttcccaacgttgccatctcctgtaccacaatctctctggaagaccaatgaaagaattgttctcactacaccaagtaagaaatttagttccttgtgtttttttaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

430

Amino Acids

48.36

Weight (kDa)

8.53

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 363
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 403
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 1 cut(s) 1151
AclI AACGTT 1 cut(s) 1193
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 1265
AcuI CTGAAG 2 cut(s) 509, 1199
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 2 cut(s) 426, 1209
AfiI CCNNNNNNNGG 2 cut(s) 221, 443
AgeI ACCGGT 1 cut(s) 496
AgsI TTSAA 7 cut(s) 29, 253, 310, 392, 755, 876, 992
AleI CACNNNNGTG 1 cut(s) 981
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 69, 843
Alw44I GTGCAC 1 cut(s) 189
AlwI GGATC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 2 cut(s) 238, 1010
ApaI GGGCCC 1 cut(s) 1014
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 3 cut(s) 431, 1001, 1078
ApoI RAATTY 1 cut(s) 1265
ArsI GACNNNNNNTTYG 2 cut(s) 1034, 1066
AsiGI ACCGGT 1 cut(s) 496
Asp700I GAANNNNTTC 2 cut(s) 387, 1184
AspS9I GGNCC 5 cut(s) 239, 567, 952, 1010, 1011
AsuNHI GCTAGC 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 2 cut(s) 567, 952
BaeGI GKGCMC 3 cut(s) 15, 193, 1014
BanII GRGCYC 1 cut(s) 1014
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 1232
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 3 cut(s) 443, 988, 1065
BccI CCATC 5 cut(s) 179, 437, 464, 787, 1207
BceAI ACGGC 1 cut(s) 873
BcoDI GTCTC 2 cut(s) 69, 843
BfaI CTAG 3 cut(s) 374, 516, 1007
BfmI CTRYAG 2 cut(s) 417, 783
BfuAI ACCTGC 1 cut(s) 403
BglII AGATCT 1 cut(s) 1182
BisI GCNGC 4 cut(s) 432, 1002, 1079, 1152
BlsI GCNGC 4 cut(s) 433, 1003, 1080, 1153
BmcAI AGTACT 1 cut(s) 426
Bme18I GGWCC 2 cut(s) 567, 952
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 5 cut(s) 239, 567, 952, 1010, 1011
BmiI GGNNCC 5 cut(s) 241, 954, 1012, 1071, 1138
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 3 cut(s) 340, 699, 765
BmtI GCTAGC 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 1008
BpiI GAAGAC 1 cut(s) 1232
BpmI CTGGAG 5 cut(s) 51, 255, 716, 896, 1067
BpuEI CTTGAG 1 cut(s) 1106
BsaHI GRCGYC 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 496
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 443
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 3 cut(s) 374, 913, 1014
Bse3DI GCAATG 1 cut(s) 1166
BseGI GGATG 3 cut(s) 304, 472, 625
BseLI CCNNNNNNNGG 2 cut(s) 221, 443
BseMI GCAATG 1 cut(s) 1166
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 3 cut(s) 374, 913, 1014
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 3 cut(s) 15, 193, 1014
BseXI GCAGC 3 cut(s) 443, 988, 1065
BshFI GGCC 2 cut(s) 240, 1012
BshTI ACCGGT 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 1 cut(s) 497
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 221, 443
BsmAI GTCTC 2 cut(s) 69, 843
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 2 cut(s) 240, 1012
BsoBI CYCGRG 1 cut(s) 151
Bsp120I GGGCCC 1 cut(s) 1010
Bsp1286I GDGCHC 3 cut(s) 15, 193, 1014
Bsp143I GATC 4 cut(s) 51, 117, 318, 1182
BspACI CCGC 1 cut(s) 1151
BspANI GGCC 2 cut(s) 240, 1012
BspCNI CTCAG 1 cut(s) 541
BspLI GGNNCC 5 cut(s) 241, 954, 1012, 1071, 1138
BspMI ACCTGC 1 cut(s) 403
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 1166
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 3 cut(s) 374, 913, 1014
BssAI RCCGGY 1 cut(s) 496
BssMI GATC 4 cut(s) 51, 117, 318, 1182
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 672
Bst4CI ACNGT 2 cut(s) 597, 983
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 549, 845
BstF5I GGATG 3 cut(s) 304, 472, 625
BstKTI GATC 4 cut(s) 54, 120, 321, 1185
BstMAI GTCTC 2 cut(s) 69, 843
BstMBI GATC 4 cut(s) 51, 117, 318, 1182
BstNSI RCATGY 3 cut(s) 509, 651, 899
BstSFI CTRYAG 2 cut(s) 417, 783
BstSLI GKGCMC 3 cut(s) 15, 193, 1014
BstV1I GCAGC 3 cut(s) 443, 988, 1065
BstV2I GAAGAC 1 cut(s) 1232
BstX2I RGATCY 1 cut(s) 1182
BstYI RGATCY 1 cut(s) 1182
BsuRI GGCC 2 cut(s) 240, 1012
BtsCI GGATG 3 cut(s) 304, 472, 625
BtsIMutI CAGTG 4 cut(s) 367, 546, 593, 1021
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 375
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 5 cut(s) 239, 567, 952, 1010, 1011
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 425, 1208
CspAI ACCGGT 1 cut(s) 496
CviAII CATG 5 cut(s) 121, 506, 648, 896, 1115
CviQI GTAC 2 cut(s) 425, 1208
DdeI CTNAG 2 cut(s) 549, 845
DpnI GATC 4 cut(s) 53, 119, 320, 1184
DpnII GATC 4 cut(s) 51, 117, 318, 1182
DraI TTTAAA 1 cut(s) 1288
DrdI GACNNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 1014
Eco47I GGWCC 2 cut(s) 567, 952
Eco57I CTGAAG 2 cut(s) 509, 1199
Eco88I CYCGRG 1 cut(s) 151
EcoO109I RGGNCCY 2 cut(s) 239, 1010
EcoT22I ATGCAT 2 cut(s) 946, 1166
EcoT38I GRGCYC 1 cut(s) 1014
FaeI CATG 5 cut(s) 124, 509, 651, 899, 1118
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 633
FatI CATG 5 cut(s) 120, 505, 647, 895, 1114
Fnu4HI GCNGC 4 cut(s) 432, 1002, 1079, 1152
FokI GGATG 3 cut(s) 311, 479, 612
FriOI GRGCYC 1 cut(s) 1014
Fsp4HI GCNGC 4 cut(s) 432, 1002, 1079, 1152
FspBI CTAG 3 cut(s) 374, 516, 1007
GluI GCNGC 4 cut(s) 432, 1002, 1079, 1152
GsuI CTGGAG 5 cut(s) 51, 255, 716, 896, 1067
HaeIII GGCC 2 cut(s) 240, 1012
HapII CCGG 1 cut(s) 497
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 5 cut(s) 124, 509, 651, 899, 1118
HindIII AAGCTT 1 cut(s) 1119
HinfI GANTC 4 cut(s) 614, 862, 970, 1049
HpaII CCGG 1 cut(s) 497
Hpy166II GTNNAC 2 cut(s) 191, 1132
Hpy188I TCNGA 4 cut(s) 442, 571, 708, 1032
Hpy8I GTNNAC 2 cut(s) 191, 1132
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 4 cut(s) 377, 447, 737, 1037
HpyCH4III ACNGT 2 cut(s) 597, 983
HpyCH4IV ACGT 2 cut(s) 96, 1193
HpyCH4V TGCA 9 cut(s) 124, 191, 398, 413, 431, 803, 944, 986, 1164
HpyF3I CTNAG 2 cut(s) 549, 845
HpySE526I ACGT 2 cut(s) 96, 1193
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 5 cut(s) 124, 509, 651, 899, 1118
Kzo9I GATC 4 cut(s) 51, 117, 318, 1182
LmnI GCTCC 3 cut(s) 331, 439, 1136
Lsp1109I GCAGC 3 cut(s) 443, 988, 1065
LweI GCATC 3 cut(s) 340, 699, 765
MaeI CTAG 3 cut(s) 374, 516, 1007
MaeII ACGT 2 cut(s) 96, 1193
MaeIII GTNAC 5 cut(s) 146, 365, 574, 787, 915
MalI GATC 4 cut(s) 53, 119, 320, 1184
MboI GATC 4 cut(s) 51, 117, 318, 1182
MboII GAAGA 4 cut(s) 572, 1177, 1192, 1237
MfeI CAATTG 1 cut(s) 770
MflI RGATCY 1 cut(s) 1182
MhlI GDGCHC 3 cut(s) 15, 193, 1014
MlyI GAGTC 2 cut(s) 964, 1058
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 6 cut(s) 119, 121, 147, 230, 658, 1104
Mph1103I ATGCAT 2 cut(s) 946, 1166
MroXI GAANNNNTTC 2 cut(s) 387, 1184
MseI TTAA 5 cut(s) 200, 489, 501, 585, 1287
MslI CAYNNNNRTG 1 cut(s) 981
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 497
MunI CAATTG 1 cut(s) 770
NdeII GATC 4 cut(s) 51, 117, 318, 1182
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 5 cut(s) 124, 509, 651, 899, 1118
NlaIV GGNNCC 5 cut(s) 241, 954, 1012, 1071, 1138
NmuCI GTSAC 3 cut(s) 146, 365, 915
NsiI ATGCAT 2 cut(s) 946, 1166
NspI RCATGY 3 cut(s) 509, 651, 899
OliI CACNNNNGTG 1 cut(s) 981
PaeR7I CTCGAG 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdmI GAANNNNTTC 2 cut(s) 387, 1184
PfeI GAWTC 2 cut(s) 614, 862
PflMI CCANNNNNTGG 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 496
PkrI GCNGC 4 cut(s) 433, 1003, 1080, 1153
PleI GAGTC 2 cut(s) 964, 1057
PpsI GAGTC 2 cut(s) 964, 1057
Psp1406I AACGTT 1 cut(s) 1193
PspN4I GGNNCC 5 cut(s) 241, 954, 1012, 1071, 1138
PspOMI GGGCCC 1 cut(s) 1010
PspPI GGNCC 5 cut(s) 239, 567, 952, 1010, 1011
PspXI VCTCGAGB 1 cut(s) 151
PsrI GAACNNNNNNTAC 2 cut(s) 747, 779
PsuI RGATCY 1 cut(s) 1182
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 426, 1209
RsaNI GTAC 2 cut(s) 425, 1208
RseI CAYNNNNRTG 1 cut(s) 981
SaqAI TTAA 5 cut(s) 200, 489, 501, 585, 1287
SatI GCNGC 4 cut(s) 432, 1002, 1079, 1152
Sau3AI GATC 4 cut(s) 51, 117, 318, 1182
Sau96I GGNCC 5 cut(s) 239, 567, 952, 1010, 1011
ScaI AGTACT 1 cut(s) 426
SchI GAGTC 2 cut(s) 964, 1058
SduI GDGCHC 3 cut(s) 15, 193, 1014
SfaNI GCATC 3 cut(s) 340, 699, 765
SfcI CTRYAG 2 cut(s) 417, 783
Sfr274I CTCGAG 1 cut(s) 151
SinI GGWCC 2 cut(s) 567, 952
SlaI CTCGAG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 2 cut(s) 151, 1085
SmoI CTYRAG 2 cut(s) 151, 1085
SsiI CCGC 1 cut(s) 1151
SspMI CTAG 3 cut(s) 374, 516, 1007
TaaI ACNGT 2 cut(s) 597, 983
TaiI ACGT 2 cut(s) 99, 1196
TaqI TCGA 5 cut(s) 99, 152, 183, 210, 321
TatI WGTACW 1 cut(s) 424
TauI GCSGC 1 cut(s) 1154
TfiI GAWTC 2 cut(s) 614, 862
Tru1I TTAA 5 cut(s) 200, 489, 501, 585, 1287
Tru9I TTAA 5 cut(s) 200, 489, 501, 585, 1287
TscAI CASTG 4 cut(s) 374, 553, 600, 1021
TseFI GTSAC 3 cut(s) 146, 365, 915
TseI GCWGC 3 cut(s) 431, 1001, 1078
Tsp45I GTSAC 3 cut(s) 146, 365, 915
TspDTI ATGAA 4 cut(s) 614, 710, 1131, 1248
TspGWI ACGGA 2 cut(s) 101, 1149
TspRI CASTG 4 cut(s) 374, 553, 600, 1021
Van91I CCANNNNNTGG 1 cut(s) 221
VneI GTGCAC 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 567, 952
XapI RAATTY 1 cut(s) 1265
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 3 cut(s) 509, 651, 899
XcmI CCANNNNNNNNNTGG 1 cut(s) 1218
XhoI CTCGAG 1 cut(s) 151
XmnI GAANNNNTTC 2 cut(s) 387, 1184
XspI CTAG 3 cut(s) 374, 516, 1007
ZraI GACGTC 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 426
Zsp2I ATGCAT 2 cut(s) 946, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.