Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Forward (+)

56027023 .. 56028551

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGCAACGTGCCTAAAGAAGCAATTGAGGTCTTAGCACGAGCATTGGCATTACCAAATTTGTCTCCCGATGTTGCACTTGCTCTCACCCTAGATGTCGAGTACGGATTCGCGAGATCATGCGCTCTTGCTATATACTGCGATGTCAAAAAATCTGAATACAAGGAAGATGGACTTCCTGTAGTCGTTAAATTGCCCATTAAGCATGTACTATCAAGGGAACTTCAGCTTTACTTTGAGAAAATCATAGGGCTCAATCAAAGGTCTAGCTCAACCCTTTTTGAAGAAACATTAGTGAGCTTGGCAATAGATTCAGGGCTCCATCTGTTGGTTCCTTACTTTACGTGCTTGTTGCTGATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

121

Amino Acids

13.45

Weight (kDa)

5.64

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF6_C	PF07571	68 - 115	5.1e-11	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccII	CGCG	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	104, 210
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	284
AluBI	AGCT	3 cut(s)	229, 270, 300
AluI	AGCT	3 cut(s)	229, 270, 300
Alw26I	GTCTC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	255, 321
BauI	CACGAG	1 cut(s)	39
BccI	CCATC	2 cut(s)	164, 330
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	92, 267
BfmI	CTRYAG	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	320, 333
BsaAI	YACGTR	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	255, 321
Bsp143I	GATC	1 cut(s)	116
Bsp68I	TCGCGA	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	320, 333
BssMI	GATC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	113
CfoI	GCGC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	103, 209
CviAII	CATG	2 cut(s)	120, 206
CviJI	RGCY	5 cut(s)	229, 253, 270, 300, 319
CviKI_1	RGCY	5 cut(s)	229, 253, 270, 300, 319
CviQI	GTAC	2 cut(s)	103, 209
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	255, 321
Eco57I	CTGAAG	1 cut(s)	209
EcoT38I	GRGCYC	2 cut(s)	255, 321
FaeI	CATG	2 cut(s)	123, 209
FaiI	YATR	5 cut(s)	121, 134, 136, 207, 248
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	2 cut(s)	119, 205
FriOI	GRGCYC	2 cut(s)	255, 321
FspBI	CTAG	2 cut(s)	92, 267
GlaI	GCGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	123, 209
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	2 cut(s)	108, 311
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	68, 112
HpyCH4IV	ACGT	2 cut(s)	9, 344
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	2 cut(s)	9, 344
Hsp92II	CATG	2 cut(s)	123, 209
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	2 cut(s)	192, 300
MaeI	CTAG	2 cut(s)	92, 267
MaeII	ACGT	2 cut(s)	9, 344
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	2 cut(s)	179, 296
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	2 cut(s)	255, 321
MluCI	AATT	3 cut(s)	24, 58, 191
MnlI	CCTC	2 cut(s)	22, 354
MseI	TTAA	2 cut(s)	189, 201
MunI	CAATTG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	2 cut(s)	123, 209
NlaIV	GGNNCC	2 cut(s)	320, 333
NruI	TCGCGA	1 cut(s)	113
NspI	RCATGY	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	108, 311
PflMI	CCANNNNNTGG	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	320, 333
RruI	TCGCGA	1 cut(s)	113
RsaI	GTAC	2 cut(s)	104, 210
RsaNI	GTAC	2 cut(s)	103, 209
SaqAI	TTAA	2 cut(s)	189, 201
Sau3AI	GATC	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	255, 321
SetI	ASST	8 cut(s)	12, 33, 231, 266, 272, 302, 347, 365
SfcI	CTRYAG	1 cut(s)	180
Sse9I	AATT	3 cut(s)	24, 58, 191
SspMI	CTAG	2 cut(s)	92, 267
TaiI	ACGT	2 cut(s)	12, 347
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	24, 58, 191
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	108, 311
Tru1I	TTAA	2 cut(s)	189, 201
Tru9I	TTAA	2 cut(s)	189, 201
TspGWI	ACGGA	1 cut(s)	120
Van91I	CCANNNNNTGG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	2 cut(s)	92, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.