Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

37520000 .. 37521744

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG298100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCGTCTTGTCCGGAGCCTTCTTCAAAATCCTCACATACATGTTGAACCTTATCTACACCAATTGATGCCTTCTGTTATTACCTGCCTTGTTGCAAAAAGACTAGGGAATAGATATACTGACAATCACTGGGAACTTAGAAACCTTACTGCCAACCTGGTTTCTTCAATCTGCAAAAGATTTAGACATTTTTGTCATAATCTTCAGCCACGTTTGACAAGGACCTTGCTTCACGCTTTCTTGGACCTAACCAAAGCATTACCCCAACATTATGGCGCAATTCAAGGGCTAGCAGCTCTTGGTCCCAATGTGGTTCGCTTTCTTATACTACCAAATCTCGATTCGTATATGCAACTTCTTGAGCCAGAAATGATACTTGAGAAGCAAAAGAATGAGATAAAGAGGCATGAAGCTTGGCATGTCTATGGGGCCTTTGCTGCGTGCGGCTGGCCAATGCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

154

Amino Acids

17.89

Weight (kDa)

9.54

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF6_C	PF07571	1 - 113	1.4e-45	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	12
AciI	CCGC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	26, 47, 168, 284
AjnI	CCWGG	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	2 cut(s)	296, 413
AluI	AGCT	2 cut(s)	296, 413
Aor13HI	TCCGGA	1 cut(s)	12
AoxI	GGCC	2 cut(s)	429, 449
ApeKI	GCWGC	2 cut(s)	293, 437
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	4 cut(s)	222, 244, 302, 429
AsuNHI	GCTAGC	1 cut(s)	289
AvaII	GGWCC	3 cut(s)	222, 244, 302
BalI	TGGCCA	1 cut(s)	451
BbvI	GCAGC	2 cut(s)	305, 424
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	2 cut(s)	104, 290
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	294, 438, 445
BlsI	GCNGC	3 cut(s)	295, 439, 446
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	3 cut(s)	222, 244, 302
BmgT120I	GGNCC	4 cut(s)	222, 244, 302, 429
BmiI	GGNNCC	3 cut(s)	17, 304, 430
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	57
BmtI	GCTAGC	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	139
BpuEI	CTTGAG	2 cut(s)	380, 398
BsaWI	WCCGGW	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	305, 424
BshFI	GGCC	2 cut(s)	431, 451
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	431, 451
Bsp13I	TCCGGA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	2 cut(s)	431, 451
BspEI	TCCGGA	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	17, 304, 430
BspMI	ACCTGC	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	158
BstC8I	GCNNGC	4 cut(s)	291, 442, 449, 459
BstDEI	CTNAG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	3 cut(s)	44, 422, 461
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	305, 424
BstXI	CCANNNNNNTGG	1 cut(s)	272
BsuRI	GGCC	2 cut(s)	431, 451
BtsIMutI	CAGTG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	4 cut(s)	291, 442, 449, 459
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	4 cut(s)	222, 244, 302, 429
CsiI	ACCWGGT	1 cut(s)	156
CviAII	CATG	5 cut(s)	41, 407, 419, 458, 462
CviJI	RGCY	9 cut(s)	18, 208, 289, 296, 364, 413, 431, 447, 451
CviKI_1	RGCY	9 cut(s)	18, 208, 289, 296, 364, 413, 431, 447, 451
DdeI	CTNAG	1 cut(s)	137
DrdI	GACNNNNNNGTC	1 cut(s)	192
DseDI	GACNNNNNNGTC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	449
Eco47I	GGWCC	3 cut(s)	222, 244, 302
Eco57I	CTGAAG	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	222, 429
EcoRII	CCWGG	1 cut(s)	156
EcoT22I	ATGCAT	2 cut(s)	459, 463
FaeI	CATG	5 cut(s)	44, 410, 422, 461, 465
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	5 cut(s)	40, 406, 418, 457, 461
Fnu4HI	GCNGC	3 cut(s)	294, 438, 445
Fsp4HI	GCNGC	3 cut(s)	294, 438, 445
FspBI	CTAG	2 cut(s)	104, 290
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	3 cut(s)	294, 438, 445
HaeIII	GGCC	2 cut(s)	431, 451
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	44, 410, 422, 461, 465
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	13
Hpy188III	TCNNGA	3 cut(s)	13, 338, 359
HpyAV	CCTTC	2 cut(s)	29, 81
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	5 cut(s)	95, 174, 352, 457, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	5 cut(s)	44, 410, 422, 461, 465
HspAI	GCGC	1 cut(s)	276
Kpn2I	TCCGGA	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	7 cut(s)	26, 97, 115, 143, 170, 378, 433
Lsp1109I	GCAGC	2 cut(s)	305, 424
LweI	GCATC	1 cut(s)	57
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	2 cut(s)	104, 290
MaeII	ACGT	1 cut(s)	211
MboII	GAAGA	3 cut(s)	14, 156, 194
MfeI	CAATTG	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	2 cut(s)	62, 279
MluNI	TGGCCA	1 cut(s)	451
MnlI	CCTC	2 cut(s)	42, 396
Mox20I	TGGCCA	1 cut(s)	451
Mph1103I	ATGCAT	2 cut(s)	459, 463
MroI	TCCGGA	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	451
MslI	CAYNNNNRTG	2 cut(s)	39, 423
Msp20I	TGGCCA	1 cut(s)	451
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	437
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	5 cut(s)	44, 410, 422, 461, 465
NlaIV	GGNNCC	3 cut(s)	17, 304, 430
NsiI	ATGCAT	2 cut(s)	459, 463
NspI	RCATGY	3 cut(s)	44, 422, 461
PaeI	GCATGC	1 cut(s)	461
PciI	ACATGT	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	295, 439, 446
PpuMI	RGGWCCY	1 cut(s)	222
PscI	ACATGT	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	17, 304, 430
PspPI	GGNCC	4 cut(s)	222, 244, 302, 429
PspPPI	RGGWCCY	1 cut(s)	222
PsrI	GAACNNNNNNTAC	2 cut(s)	39, 71
RseI	CAYNNNNRTG	2 cut(s)	39, 423
SatI	GCNGC	3 cut(s)	294, 438, 445
Sau96I	GGNCC	4 cut(s)	222, 244, 302, 429
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	9 cut(s)	52, 86, 147, 159, 214, 227, 249, 298, 415
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	3 cut(s)	222, 244, 302
SmiMI	CAYNNNNRTG	2 cut(s)	39, 423
SmlI	CTYRAG	2 cut(s)	359, 377
SmoI	CTYRAG	2 cut(s)	359, 377
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	2 cut(s)	62, 279
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	2 cut(s)	104, 290
StyD4I	CCNGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	62, 279
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	341
TscAI	CASTG	1 cut(s)	134
TseI	GCWGC	2 cut(s)	293, 437
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	134
VpaK11BI	GGWCC	3 cut(s)	222, 244, 302
XceI	RCATGY	3 cut(s)	44, 422, 461
XspI	CTAG	2 cut(s)	104, 290
Zsp2I	ATGCAT	2 cut(s)	459, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.