MD13G1017500.v1.1

Protein POLLEN DEFECTIVE IN GUIDANCE

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
1141628 .. 1143639
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1017500.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGGCGTTGAGATCCAACGGTCGAAATCTGTCCTTCGAGATTCTGAGCAGAAACAGTTCCCTCGACGACCAACATGATCACGCAATCTTCCACCGATCCAACTCAGATCCCGTTCAATCCGATCAAGCCACCAACTCCAAGTTCGCCCGGAGAAAACGCAAGAAGAAGAAGAAGACACCTGCCACCGCCCACGCCTCCATACCCGAAAGCCCCACTGCCATCTACGGCGTTGTTTCCAACTCCTTCGATGTCATTTCCGAAACCACAAACAGAGAAACCGGTGATATTCACGGCAACGGATTGGAATTCAATTACAGCGTCCAGACCGTGCTGTTGCCCGTCACGACGGAGGTCGTCGATCCCGAGTTCCAGGGTTTGCACGGGACCGCCGAGTTGAGGCAGAGGACTGTCATTGGTAGCGGCGGGGGAGTTGTGGAAGAGACGGAAACGGCGTCGTCTCGCATTGAAAGCCAGGCCAAGGAGGAGAGTGCGGCGGAGGGGGGTTTGGCGAGTAAGCAGAGGAGCGAGCTCAGTGGGAACGTGATCCCGAAATTGCAGACCGCTGAGTCATTGGATTGGAAGCGGCTCATGGCCGAAGATCCAAATCATTTGTTTTCAGTGGACAAGTCGCCAGTGCAATACTTCATGGAAGAGATGTCGAATGGCAATGCGTTGCGGAGCACAACCACCCTTGGCAATGAGAAGGAACGAGAGAGAGTTTACGACACGATATTTCGCTTGCCATGGCGATGTGAATTGCTTATAGATGTTGGCTTTTTTGTGTGTTTTGATTCGTTTCTGTCACTGTTGACTATCATGCCAACAAGAATTTTGATGACTATTTGGAGGACCATACAGTCAAGTTTGTACCAGTGTAGTATATTTACAATGTCACCTAACCATACCTGCGGCAGGCAGTTTAAGAGGCCATCTGCAGCAGAGCTGTGTGATTTTGGTTGTTTTACTATAATGGCTTGCGGAGTCACTCTCTTGGAGCAAACAGATATCAGCTTAATATACCACATGATCCGTGGTCAAGGAACAATCAAATTATATGTGGTGTACAACGTGTTGGAGATATTTGATAAACTATGCCAAAGTTTTAACCCAGATGTATTGCAAACTCTATTTAACTCAGCAGATGGACTTGCAAGTTGTCCACCAGAAAACATGAGATTCTGGGTTTGGAGATTCATTTGCGACCAAGCTTTAGCTGTGGCTGCTACAAATATCCTTTGGAAAGATCATTTTCTTCAAAGATTTTTTCACCCCACTTTTCCTGCATAA

Protein Analysis

429

Amino Acids

48.21

Weight (kDa)

6.03

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF747 PF05346 312 - 409 2.5e-26 Eukaryotic membrane protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
AasI GACNNNNNNGTC 2 cut(s) 565, 856
Acc36I ACCTGC 2 cut(s) 187, 914
AclWI GGATC 7 cut(s) 6, 90, 101, 353, 538, 593, 1021
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 2 cut(s) 305, 828
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 2 cut(s) 869, 1064
AfiI CCNNNNNNNGG 3 cut(s) 396, 478, 912
AflIII ACRYGT 1 cut(s) 1068
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 4 cut(s) 116, 310, 467, 1256
AjnI CCWGG 2 cut(s) 369, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 5 cut(s) 529, 943, 1011, 1208, 1214
AluI AGCT 5 cut(s) 529, 943, 1011, 1208, 1214
Alw21I GWGCWC 2 cut(s) 531, 683
Alw26I GTCTC 2 cut(s) 434, 462
AlwI GGATC 7 cut(s) 6, 90, 101, 353, 538, 593, 1021
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 3 cut(s) 474, 591, 926
ApeKI GCWGC 2 cut(s) 935, 1220
ApoI RAATTY 2 cut(s) 305, 828
AsiGI ACCGGT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 384, 849
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 293, 885, 1259
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 2 cut(s) 384, 849
BanII GRGCYC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 531, 683
BbvI GCAGC 2 cut(s) 947, 1207
BccI CCATC 3 cut(s) 227, 937, 1136
BceAI ACGGC 3 cut(s) 241, 307, 465
BciT130I CCWGG 2 cut(s) 371, 473
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 434, 462
BfmI CTRYAG 1 cut(s) 933
BfuAI ACCTGC 2 cut(s) 187, 914
BisI GCNGC 6 cut(s) 421, 492, 584, 910, 936, 1221
BlsI GCNGC 6 cut(s) 422, 493, 585, 911, 937, 1222
Bme1390I CCNGG 3 cut(s) 148, 371, 473
Bme18I GGWCC 2 cut(s) 384, 849
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 384, 849
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 3 cut(s) 148, 371, 473
BoxI GACNNNNGTC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 972, 1004
BpuMI CCSGG 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 5 cut(s) 370, 477, 691, 743, 1030
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 478, 912
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 632, 871
Bse3DI GCAATG 2 cut(s) 673, 703
Bse8I GATNNNNATC 1 cut(s) 603
BseBI CCWGG 2 cut(s) 371, 473
BseDI CCNNGG 5 cut(s) 370, 477, 691, 743, 1030
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 3 cut(s) 396, 478, 912
BseMI GCAATG 2 cut(s) 673, 703
BseMII CTCAG 5 cut(s) 35, 117, 544, 555, 1149
BseNI ACTGG 2 cut(s) 632, 871
BseRI GAGGAG 2 cut(s) 497, 535
BseXI GCAGC 2 cut(s) 947, 1207
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 3 cut(s) 476, 593, 928
BshTI ACCGGT 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 531, 683
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 2 cut(s) 148, 279
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 3 cut(s) 396, 478, 912
BsmAI GTCTC 2 cut(s) 434, 462
BsmBI CGTCTC 2 cut(s) 434, 462
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 3 cut(s) 476, 593, 928
BsoBI CYCGRG 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 531, 683
Bsp1407I TGTACA 1 cut(s) 1062
Bsp19I CCATGG 1 cut(s) 743
BspANI GGCC 3 cut(s) 476, 593, 928
BspCNI CTCAG 5 cut(s) 36, 116, 543, 556, 1148
BspLI GGNNCC 1 cut(s) 385
BspMAI CTGCAG 1 cut(s) 937
BspMI ACCTGC 2 cut(s) 187, 914
BspPI GGATC 7 cut(s) 6, 90, 101, 353, 538, 593, 1021
BsrDI GCAATG 2 cut(s) 673, 703
BsrFI RCCGGY 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 1062
BsrI ACTGG 2 cut(s) 632, 871
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 5 cut(s) 370, 477, 691, 743, 1030
BssNI GRCGYC 1 cut(s) 452
BssT1I CCWWGG 3 cut(s) 477, 691, 743
Bst2UI CCWGG 2 cut(s) 371, 473
Bst4CI ACNGT 6 cut(s) 20, 56, 328, 409, 807, 858
Bst6I CTCTTC 2 cut(s) 432, 645
BstACI GRCGYC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 1062
BstC8I GCNNGC 4 cut(s) 527, 740, 914, 976
BstDEI CTNAG 5 cut(s) 44, 103, 530, 564, 1135
BstDSI CCRYGG 2 cut(s) 743, 1030
BstENI CCTNNNNNAGG 1 cut(s) 910
BstMAI GTCTC 2 cut(s) 434, 462
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 468, 1220
BstNI CCWGG 2 cut(s) 371, 473
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 3 cut(s) 146, 369, 471
BstSFI CTRYAG 1 cut(s) 933
BstV1I GCAGC 2 cut(s) 947, 1207
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 3 cut(s) 11, 106, 598
BstYI RGATCY 3 cut(s) 11, 106, 598
BsuRI GGCC 3 cut(s) 476, 593, 928
BtgI CCRYGG 2 cut(s) 743, 1030
BtgZI GCGATG 1 cut(s) 763
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 6 cut(s) 213, 538, 624, 639, 803, 878
BveI ACCTGC 2 cut(s) 187, 914
Cac8I GCNNGC 4 cut(s) 527, 740, 914, 976
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 384, 849
CseI GACGC 2 cut(s) 307, 441
Csp6I GTAC 2 cut(s) 868, 1063
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 7 cut(s) 74, 589, 646, 744, 817, 1024, 1171
CviQI GTAC 2 cut(s) 868, 1063
DdeI CTNAG 5 cut(s) 44, 103, 530, 564, 1135
DrdI GACNNNNNNGTC 2 cut(s) 565, 856
DseDI GACNNNNNNGTC 2 cut(s) 565, 856
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 2 cut(s) 432, 645
EarI CTCTTC 2 cut(s) 432, 645
EciI GGCGGA 1 cut(s) 509
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 3 cut(s) 477, 691, 743
Eco24I GRGCYC 1 cut(s) 531
Eco32I GATATC 1 cut(s) 1006
Eco47I GGWCC 2 cut(s) 384, 849
Eco53kI GAGCTC 1 cut(s) 529
Eco88I CYCGRG 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 529
EcoNI CCTNNNNNAGG 1 cut(s) 910
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 369, 471
EcoRV GATATC 1 cut(s) 1006
EcoT14I CCWWGG 3 cut(s) 477, 691, 743
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 3 cut(s) 477, 691, 743
Esp3I CGTCTC 2 cut(s) 434, 462
FaeI CATG 7 cut(s) 77, 592, 649, 747, 820, 1027, 1174
FaqI GGGAC 1 cut(s) 397
FatI CATG 7 cut(s) 73, 588, 645, 743, 816, 1023, 1170
FauI CCCGC 1 cut(s) 416
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 6 cut(s) 421, 492, 584, 910, 936, 1221
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 6 cut(s) 421, 492, 584, 910, 936, 1221
GluI GCNGC 6 cut(s) 421, 492, 584, 910, 936, 1221
HaeIII GGCC 3 cut(s) 476, 593, 928
HapII CCGG 2 cut(s) 148, 279
HgaI GACGC 2 cut(s) 307, 441
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 7 cut(s) 77, 592, 649, 747, 820, 1027, 1174
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HindIII AAGCTT 1 cut(s) 1206
HinfI GANTC 6 cut(s) 40, 566, 791, 981, 1176, 1191
HpaII CCGG 2 cut(s) 148, 279
HphI GGTGA 3 cut(s) 293, 885, 1259
Hpy166II GTNNAC 5 cut(s) 622, 721, 810, 1063, 1160
Hpy188I TCNGA 4 cut(s) 45, 106, 121, 259
Hpy188III TCNNGA 5 cut(s) 37, 322, 343, 362, 547
Hpy8I GTNNAC 5 cut(s) 622, 721, 810, 1063, 1160
Hpy99I CGWCG 4 cut(s) 68, 349, 359, 457
HpyAV CCTTC 3 cut(s) 43, 253, 697
HpyCH4III ACNGT 6 cut(s) 20, 56, 328, 409, 807, 858
HpyCH4IV ACGT 2 cut(s) 540, 1068
HpyCH4V TGCA 7 cut(s) 379, 556, 637, 935, 1120, 1151, 1283
HpyF10VI GCNNNNNNNGC 2 cut(s) 468, 1220
HpyF3I CTNAG 5 cut(s) 44, 103, 530, 564, 1135
HpySE526I ACGT 2 cut(s) 540, 1068
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 7 cut(s) 77, 592, 649, 747, 820, 1027, 1174
Ksp22I TGATCA 1 cut(s) 76
LmnI GCTCC 3 cut(s) 522, 678, 994
Lsp1109I GCAGC 2 cut(s) 947, 1207
MaeII ACGT 2 cut(s) 540, 1068
MaeIII GTNAC 4 cut(s) 340, 801, 891, 982
MboII GAAGA 9 cut(s) 79, 175, 178, 181, 184, 449, 608, 662, 1244
MflI RGATCY 3 cut(s) 11, 106, 598
MhlI GDGCHC 2 cut(s) 531, 683
MluCI AATT 6 cut(s) 305, 310, 551, 755, 828, 1049
MlyI GAGTC 2 cut(s) 575, 990
MmeI TCCRAC 4 cut(s) 39, 123, 261, 1053
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 4 cut(s) 921, 1013, 1104, 1131
MslI CAYNNNNRTG 1 cut(s) 748
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 2 cut(s) 148, 279
MspR9I CCNGG 3 cut(s) 148, 371, 473
MvaI CCWGG 2 cut(s) 371, 473
MwoI GCNNNNNNNGC 2 cut(s) 468, 1220
NciI CCSGG 1 cut(s) 148
NcoI CCATGG 1 cut(s) 743
NlaIII CATG 7 cut(s) 77, 592, 649, 747, 820, 1027, 1174
NlaIV GGNNCC 1 cut(s) 385
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 4 cut(s) 340, 801, 891, 982
PaqCI CACCTGC 1 cut(s) 187
PcsI WCGNNNNNNNCGW 3 cut(s) 360, 387, 449
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 4 cut(s) 40, 791, 1176, 1191
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 6 cut(s) 422, 493, 585, 911, 937, 1222
PleI GAGTC 2 cut(s) 574, 989
PpsI GAGTC 2 cut(s) 574, 989
PshAI GACNNNNGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 369, 471
PspGI CCWGG 2 cut(s) 369, 471
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 2 cut(s) 384, 849
PstI CTGCAG 1 cut(s) 937
PsuI RGATCY 3 cut(s) 11, 106, 598
RsaI GTAC 2 cut(s) 869, 1064
RsaNI GTAC 2 cut(s) 868, 1063
RseI CAYNNNNRTG 1 cut(s) 748
SacI GAGCTC 1 cut(s) 531
SaqAI TTAA 4 cut(s) 921, 1013, 1104, 1131
SatI GCNGC 6 cut(s) 421, 492, 584, 910, 936, 1221
Sau96I GGNCC 2 cut(s) 384, 849
SchI GAGTC 2 cut(s) 575, 990
ScrFI CCNGG 3 cut(s) 148, 371, 473
SduI GDGCHC 2 cut(s) 531, 683
SfcI CTRYAG 1 cut(s) 933
SinI GGWCC 2 cut(s) 384, 849
SmiMI CAYNNNNRTG 1 cut(s) 748
Sse9I AATT 6 cut(s) 305, 310, 551, 755, 828, 1049
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 3 cut(s) 146, 369, 471
StyI CCWWGG 3 cut(s) 477, 691, 743
TaaI ACNGT 6 cut(s) 20, 56, 328, 409, 807, 858
TaiI ACGT 2 cut(s) 543, 1071
TaqI TCGA 6 cut(s) 22, 36, 63, 246, 357, 659
TasI AATT 6 cut(s) 305, 310, 551, 755, 828, 1049
TatI WGTACW 1 cut(s) 1062
TauI GCSGC 4 cut(s) 423, 494, 586, 912
TfiI GAWTC 4 cut(s) 40, 791, 1176, 1191
Tru1I TTAA 4 cut(s) 921, 1013, 1104, 1131
Tru9I TTAA 4 cut(s) 921, 1013, 1104, 1131
TscAI CASTG 6 cut(s) 220, 538, 624, 639, 810, 878
TseFI GTSAC 4 cut(s) 340, 801, 891, 982
TseI GCWGC 2 cut(s) 935, 1220
Tsp45I GTSAC 4 cut(s) 340, 801, 891, 982
TspDTI ATGAA 2 cut(s) 634, 1183
TspGWI ACGGA 4 cut(s) 312, 362, 458, 1019
TspRI CASTG 6 cut(s) 220, 538, 624, 639, 810, 878
VpaK11BI GGWCC 2 cut(s) 384, 849
XagI CCTNNNNNAGG 1 cut(s) 910
XapI RAATTY 2 cut(s) 305, 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 1028
XmnI GAANNNNTTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.