Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

17256953 .. 17258181

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG122800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTATCAGCTCAGTTTGCGAACTAGAAGTGGAGATTACTTGTATCTTGGAATAGTGATTGTGGTGGCAATTACTTTGTCAAGCTGCATTGTTGCTCACAATAATGACTTGTTCGCTTTGCTGGTGTCCTATAACTTTGCCGAGATAAAAAGCAATGTGTTCAAGCGATATAGTAAGGAAAACATTCATAGCCTGGTATACTTTGATTCTGTGGAGAGGTTCCACATTTATGCATTTATCATATTCATCCTAGCTCAAAACATTCTGGAGGAAACATTTGATGGGAAACTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

98

Amino Acids

11.4

Weight (kDa)

6.25

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	18 - 90	4.8e-23	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	10, 84, 254
AluI	AGCT	3 cut(s)	10, 84, 254
ApeKI	GCWGC	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	194
BfaI	CTAG	2 cut(s)	24, 251
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	160
BssNAI	GTATAC	1 cut(s)	199
Bst1107I	GTATAC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	71
BstZ17I	GTATAC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	246
CviJI	RGCY	4 cut(s)	10, 84, 192, 254
CviKI_1	RGCY	4 cut(s)	10, 84, 192, 254
DdeI	CTNAG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	235
FaiI	YATR	6 cut(s)	132, 171, 189, 199, 231, 242
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	2 cut(s)	24, 251
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	287
HinfI	GANTC	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	87, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	11
LpnPI	CCDG	4 cut(s)	107, 179, 206, 251
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	2 cut(s)	24, 251
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	2 cut(s)	210, 262
Mph1103I	ATGCAT	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	1 cut(s)	295
MslI	CAYNNNNRTG	2 cut(s)	102, 228
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	102, 228
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	4 cut(s)	12, 86, 221, 256
SmiMI	CAYNNNNRTG	2 cut(s)	102, 228
Sse9I	AATT	1 cut(s)	69
SspMI	CTAG	2 cut(s)	24, 251
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	291
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	176, 235
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	2 cut(s)	24, 251
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.