Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

283393 .. 285499

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atggcgtcgttgagatcgggcggccggaagctctcgttcgagattctgagcaggaacagctcccccgaagaagaagaagaagccggactcttctaccgatccaactcagatccaatccgatcgagacacgacgccgccgacgatcacaagcccgccgccgcgcgaagaaaacgtaagaagaagaagaggaccgtcgcgaactgctccataccggagagcccgaccgccgcggaggacgacgccgttaagaacgacgtgactaacggattggaattcgattatagccagacggtgctatgctccgtcacggcggaggtcgtcagcgacccggagtttcagaataattttggcgcgcccgaattgaggcagaggactgtcaatgccggcgccggaggaggagttgtgggcgaaacgacgccgtccggtgctttagaaggtgaggccaatgcaaaggaggagagtggcgtcgagatgttggaaaacgctggtgtggttttcgtctgtgaaatgattattgatatcgtaaagcactcgttcattgctaagttcaatgacataaagcccattgcatactctgagtttcttgaagacctatgcaaacagactttaaatatacaaccagagaccgcaaagaaaaatctcacatttattcccctagcaccagcctgtgtggtcatccgagtgcttactccagtatatgctgcgcaccttccatgcagtcccttaccatggaaactcttttggattcttgtcctctttgcaatgaactatgttatgctgacaagcctcaaggtgttgataggcatgggcctccagaaacatgccagttggtacgttaataggtgcagaaagaggaaacatcatctacattatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

292

Amino Acids

32.39

Weight (kDa)

7.08

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	386
AccII	CGCG	5 cut(s)	161, 163, 197, 230, 353
AclWI	GGATC	2 cut(s)	93, 104
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	272
AcyI	GRCGYC	6 cut(s)	5, 132, 240, 387, 416, 465
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	2 cut(s)	363, 729
AgsI	TTSAA	2 cut(s)	550, 587
AjiI	CACGTC	1 cut(s)	256
AluBI	AGCT	2 cut(s)	31, 60
AluI	AGCT	2 cut(s)	31, 60
Alw26I	GTCTC	2 cut(s)	118, 617
AlwI	GGATC	2 cut(s)	93, 104
AoxI	GGCC	3 cut(s)	22, 441, 808
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	1 cut(s)	272
AscI	GGCGCGCC	1 cut(s)	351
AspLEI	GCGC	5 cut(s)	163, 353, 355, 389, 706
AspS9I	GGNCC	2 cut(s)	189, 808
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	688
BceAI	ACGGC	3 cut(s)	227, 324, 403
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	118, 617
BfaI	CTAG	1 cut(s)	656
BfoI	RGCGCY	1 cut(s)	390
BisI	GCNGC	6 cut(s)	22, 135, 156, 159, 228, 702
BlsI	GCNGC	6 cut(s)	23, 136, 157, 160, 229, 703
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	189, 808
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	2 cut(s)	675, 797
BpuEI	CTTGAG	1 cut(s)	773
BpuMI	CCSGG	1 cut(s)	329
BsaHI	GRCGYC	6 cut(s)	5, 132, 240, 387, 416, 465
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	2 cut(s)	228, 728
BsaWI	WCCGGW	2 cut(s)	211, 422
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 387, 414, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 729
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	692, 825
Bse3DI	GCAATG	3 cut(s)	537, 564, 768
BseDI	CCNNGG	2 cut(s)	228, 728
BseGI	GGATG	1 cut(s)	675
BseLI	CCNNNNNNNGG	2 cut(s)	363, 729
BseMI	GCAATG	3 cut(s)	537, 564, 768
BseMII	CTCAG	3 cut(s)	38, 120, 567
BseNI	ACTGG	2 cut(s)	692, 825
BsePI	GCGCGC	1 cut(s)	351
BseRI	GAGGAG	3 cut(s)	408, 411, 470
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	688
BsgI	GTGCAG	1 cut(s)	865
Bsh1236I	CGCG	5 cut(s)	161, 163, 197, 230, 353
Bsh1285I	CGRYCG	3 cut(s)	25, 122, 225
BshFI	GGCC	3 cut(s)	24, 443, 810
BshNI	GGYRCC	1 cut(s)	386
BsiEI	CGRYCG	3 cut(s)	25, 122, 225
BsiSI	CCGG	7 cut(s)	25, 84, 212, 329, 384, 390, 423
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	2 cut(s)	363, 729
BsmAI	GTCTC	2 cut(s)	118, 617
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	3 cut(s)	24, 443, 810
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	14, 98, 109, 119, 142
Bsp19I	CCATGG	1 cut(s)	728
Bsp68I	TCGCGA	1 cut(s)	197
BspANI	GGCC	3 cut(s)	24, 443, 810
BspCNI	CTCAG	3 cut(s)	39, 119, 568
BspFNI	CGCG	5 cut(s)	161, 163, 197, 230, 353
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	93, 104
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	3 cut(s)	537, 564, 768
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	692, 825
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	228, 728
BssHII	GCGCGC	1 cut(s)	351
BssMI	GATC	5 cut(s)	14, 98, 109, 119, 142
BssNI	GRCGYC	6 cut(s)	5, 132, 240, 387, 416, 465
BssT1I	CCWWGG	1 cut(s)	728
Bst4CI	ACNGT	3 cut(s)	193, 292, 376
Bst6I	CTCTTC	2 cut(s)	95, 179
BstACI	GRCGYC	6 cut(s)	5, 132, 240, 387, 416, 465
BstC8I	GCNNGC	3 cut(s)	153, 353, 385
BstDEI	CTNAG	4 cut(s)	47, 106, 543, 576
BstDSI	CCRYGG	2 cut(s)	228, 728
BstF5I	GGATG	1 cut(s)	675
BstFNI	CGCG	5 cut(s)	161, 163, 197, 230, 353
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	5 cut(s)	163, 353, 355, 389, 706
BstKTI	GATC	5 cut(s)	17, 101, 112, 122, 145
BstMAI	GTCTC	2 cut(s)	118, 617
BstMBI	GATC	5 cut(s)	14, 98, 109, 119, 142
BstMCI	CGRYCG	3 cut(s)	25, 122, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	824
BstSCI	CCNGG	1 cut(s)	327
BstUI	CGCG	5 cut(s)	161, 163, 197, 230, 353
BstV1I	GCAGC	1 cut(s)	688
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	24, 443, 810
BtgI	CCRYGG	2 cut(s)	228, 728
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	675
BtuMI	TCGCGA	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	153, 353, 385
CfoI	GCGC	5 cut(s)	163, 353, 355, 389, 706
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	189, 808
Cfr42I	CCGCGG	1 cut(s)	231
CseI	GACGC	4 cut(s)	140, 248, 424, 454
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	4 cut(s)	714, 729, 805, 821
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	4 cut(s)	47, 106, 543, 576
DinI	GGCGCC	1 cut(s)	388
DpnI	GATC	5 cut(s)	16, 100, 111, 121, 144
DpnII	GATC	5 cut(s)	14, 98, 109, 119, 142
DraI	TTTAAA	1 cut(s)	609
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	95, 179
EarI	CTCTTC	2 cut(s)	95, 179
EciI	GGCGGA	1 cut(s)	326
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	728
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	617
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	189
Eco52I	CGGCCG	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	728
EcoT38I	GRGCYC	1 cut(s)	221
EgeI	GGCGCC	1 cut(s)	388
EheI	GGCGCC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	4 cut(s)	717, 732, 808, 824
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	4 cut(s)	713, 728, 804, 820
FauI	CCCGC	1 cut(s)	160
Fnu4HI	GCNGC	6 cut(s)	22, 135, 156, 159, 228, 702
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	6 cut(s)	22, 135, 156, 159, 228, 702
FspBI	CTAG	1 cut(s)	656
FspI	TGCGCA	1 cut(s)	705
GlaI	GCGC	5 cut(s)	162, 352, 354, 388, 705
GluI	GCNGC	6 cut(s)	22, 135, 156, 159, 228, 702
GsuI	CTGGAG	2 cut(s)	675, 797
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	24, 443, 810
HapII	CCGG	7 cut(s)	25, 84, 212, 329, 384, 390, 423
HgaI	GACGC	4 cut(s)	140, 248, 424, 454
HhaI	GCGC	5 cut(s)	163, 353, 355, 389, 706
Hin1I	GRCGYC	6 cut(s)	5, 132, 240, 387, 416, 465
Hin1II	CATG	4 cut(s)	717, 732, 808, 824
Hin6I	GCGC	5 cut(s)	161, 351, 353, 387, 704
HinP1I	GCGC	5 cut(s)	161, 351, 353, 387, 704
HinfI	GANTC	3 cut(s)	43, 87, 745
HpaII	CCGG	7 cut(s)	25, 84, 212, 329, 384, 390, 423
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	6 cut(s)	48, 109, 119, 339, 577, 680
Hpy188III	TCNNGA	6 cut(s)	40, 123, 196, 469, 584, 814
Hpy99I	CGWCG	8 cut(s)	10, 134, 143, 197, 242, 257, 418, 470
HpyAV	CCTTC	2 cut(s)	428, 719
HpyCH4III	ACNGT	3 cut(s)	193, 292, 376
HpyCH4IV	ACGT	3 cut(s)	172, 255, 834
HpyCH4V	TGCA	6 cut(s)	449, 569, 597, 717, 761, 846
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	4 cut(s)	47, 106, 543, 576
HpySE526I	ACGT	3 cut(s)	172, 255, 834
Hsp92I	GRCGYC	6 cut(s)	5, 132, 240, 387, 416, 465
Hsp92II	CATG	4 cut(s)	717, 732, 808, 824
HspAI	GCGC	5 cut(s)	161, 351, 353, 387, 704
KasI	GGCGCC	1 cut(s)	386
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	14, 98, 109, 119, 142
LmnI	GCTCC	3 cut(s)	65, 209, 305
Lsp1109I	GCAGC	1 cut(s)	688
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	3 cut(s)	172, 255, 834
MaeIII	GTNAC	2 cut(s)	256, 304
MalI	GATC	5 cut(s)	16, 100, 111, 121, 144
MboI	GATC	5 cut(s)	14, 98, 109, 119, 142
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	3 cut(s)	272, 343, 359
Mly113I	GGCGCC	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	2 cut(s)	126, 456
MroNI	GCCGGC	1 cut(s)	383
MseI	TTAA	3 cut(s)	246, 608, 837
MslI	CAYNNNNRTG	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	7 cut(s)	25, 84, 212, 329, 384, 390, 423
MspR9I	CCNGG	1 cut(s)	329
MvnI	CGCG	5 cut(s)	161, 163, 197, 230, 353
MwoI	GCNNNNNNNGC	1 cut(s)	57
NaeI	GCCGGC	1 cut(s)	385
NarI	GGCGCC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	728
NdeII	GATC	5 cut(s)	14, 98, 109, 119, 142
NgoMIV	GCCGGC	1 cut(s)	383
NlaIII	CATG	4 cut(s)	717, 732, 808, 824
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	256, 304
NruI	TCGCGA	1 cut(s)	197
NsbI	TGCGCA	1 cut(s)	705
NspI	RCATGY	1 cut(s)	824
PalAI	GGCGCGCC	1 cut(s)	351
PauI	GCGCGC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 138
PdiI	GCCGGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	43, 745
PflFI	GACNNNGTC	1 cut(s)	418
PkrI	GCNGC	6 cut(s)	23, 136, 157, 160, 229, 703
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	1 cut(s)	81
PluTI	GGCGCC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	2 cut(s)	189, 808
PsuI	RGATCY	1 cut(s)	109
PsyI	GACNNNGTC	1 cut(s)	418
PteI	GCGCGC	1 cut(s)	351
PvuI	CGATCG	1 cut(s)	122
RruI	TCGCGA	1 cut(s)	197
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	1 cut(s)	680
SacII	CCGCGG	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	246, 608, 837
SatI	GCNGC	6 cut(s)	22, 135, 156, 159, 228, 702
Sau3AI	GATC	5 cut(s)	14, 98, 109, 119, 142
Sau96I	GGNCC	2 cut(s)	189, 808
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	221
SfoI	GGCGCC	1 cut(s)	388
Sfr303I	CCGCGG	1 cut(s)	231
SgrBI	CCGCGG	1 cut(s)	231
SgsI	GGCGCGCC	1 cut(s)	351
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	3 cut(s)	272, 343, 359
SspDI	GGCGCC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	656
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	3 cut(s)	193, 292, 376
TaiI	ACGT	3 cut(s)	175, 258, 837
TaqI	TCGA	4 cut(s)	39, 122, 276, 468
TasI	AATT	3 cut(s)	272, 343, 359
TauI	GCSGC	5 cut(s)	24, 137, 158, 161, 230
TfiI	GAWTC	2 cut(s)	43, 745
Tru1I	TTAA	3 cut(s)	246, 608, 837
Tru9I	TTAA	3 cut(s)	246, 608, 837
TseFI	GTSAC	2 cut(s)	256, 304
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	2 cut(s)	256, 304
TspDTI	ATGAA	2 cut(s)	526, 779
TspGWI	ACGGA	2 cut(s)	279, 292
Tth111I	GACNNNGTC	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	824
XspI	CTAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.