Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006478.1

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

13865 .. 18849

Gene Structure 4985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006478.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1833 bp

atggccactgacttagccagtgatatggtcagtgacttaggcaatgacatgcaatatggcagtgacttggtcagcgaagcctttaagctccgaacaagtgtcatggcgtcgttgagatcgggcggccggaagctctcgttcgagattctgagcaggaacagctcccccgaagaagaagaagaagccggactcttctaccgatccaactcagatccaatccgatcgagacacgacgccgccgacgatcacaagcccgccgccgcgcgaagaaaacgtaagaagaagaagaggaccgtcgcgaactgctccataccggagagcccgaccgccgcggaggacgacgccgttaagaacgacgtgactaacggattggaattcaattatagccagacggtgctgtgctccgtcacgacggaggtcgtcagcgacccggagtttcagaataattttggcgcgcccgaattgaggcagaggactgtcaatgccggagccggaggaggagttgtgggcgaaacgacgccgtccggtgctttagaaggtgagtccaatgcaaaggaggagagtggcgtcgacgccgcggcggctccggtggccaagctgaacggcagtgtggttccgaaattgcagagcgccaagtcgttagattggcagcgggtcatggccgaagatccgaattatatgttttcagtggacaagtctccactgaagtacttcatggaagaaatgtctaatgggaattcattaaggagcacaacaacccttggaaatgagaaagaaagagagagggtttatgatactatctttcgcttaccttggagatgtgaattgctgatagatgttggctttttcgtgtgtcttgattcgtttctctcgctgttgactatcatgccaacaagaattttgatgaccctttggaggcttgtgcaaacaaggcagtttaagaggccatctgcagcagagctgtctgattttgggtgttttacgataatggcttgtggtgtcattcttttggagcaaacaggaacactcaaattgtatgtggtgtacaatgtgttggagatatttgacaaactatgtcaaagttttaatggagatgtattgcaaactctatttaactcggcagacggacttgctagctgtccaacagaaaacatgagattctggatttggagatttacttgcgaccaagctttagctgcgattactttgtcaacctgcattgttgctcacaataatgcgttgttcgctttgctggtgtccaataactttgccgagataaaaagcaacgtgttcaagcgatatagtaaggaaaacattcatagcctggtatactttgattcagtggagagattccacatttctgcatttattatattcatcctagctcaaaacattctggaggctgagggtccctggtttgaaagttttctttttaacgctggtgtggttttcgtctgtgaaatgattattgatatcgtaaagcactcgttcattgctaagttcaatgacataaagcccattgcatactctgagtttcttgaagacctatgcaaacagactttaaatatacaaccagagaccgcaaagaaaaatctcacatttattcccctagcaccagcctgtgtggtcatccgagtgcttactccagtatatgctgcgcaccttccatgcagtcccttaccatggaaactcttttggattcttgtcctctttgcaatgaactatgttatgctgacaagcctcaaggtgttgataggcatgggcctccagaaacatgccagttggtacgttaataggtgcagaaagaggaaacatcatctacattatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

610

Amino Acids

68.45

Weight (kDa)

6.19

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1659
Acc36I	ACCTGC	1 cut(s)	1223
AccI	GTMKAC	2 cut(s)	570, 1329
AccII	CGCG	6 cut(s)	263, 265, 299, 332, 455, 578
AclWI	GGATC	3 cut(s)	195, 206, 662
AcoI	YGGCCR	4 cut(s)	3, 124, 591, 660
AcsI	RAATTY	3 cut(s)	374, 736, 897
AcuI	CTGAAG	1 cut(s)	725
AcyI	GRCGYC	6 cut(s)	107, 234, 342, 518, 567, 573
AfaI	GTAC	3 cut(s)	710, 1046, 1787
AfiI	CCNNNNNNNGG	3 cut(s)	465, 915, 1683
AflIII	ACRYGT	1 cut(s)	1287
AgsI	TTSAA	5 cut(s)	379, 1294, 1421, 1504, 1541
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	1323, 1412
AluBI	AGCT	9 cut(s)	88, 133, 162, 598, 961, 1137, 1190, 1196, 1385
AluI	AGCT	9 cut(s)	88, 133, 162, 598, 961, 1137, 1190, 1196, 1385
Alw21I	GWGCWC	2 cut(s)	404, 752
Alw26I	GTCTC	3 cut(s)	220, 702, 1571
AlwI	GGATC	3 cut(s)	195, 206, 662
AoxI	GGCC	6 cut(s)	3, 124, 591, 660, 944, 1762
ApeKI	GCWGC	4 cut(s)	649, 953, 1196, 1655
ApoI	RAATTY	3 cut(s)	374, 736, 897
AscI	GGCGCGCC	1 cut(s)	453
Asp700I	GAANNNNTTC	3 cut(s)	710, 1314, 1425
AspLEI	GCGC	5 cut(s)	265, 455, 457, 632, 1660
AspS9I	GGNCC	3 cut(s)	291, 1409, 1762
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	1133
AvaII	GGWCC	2 cut(s)	291, 1409
BalI	TGGCCA	2 cut(s)	5, 593
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	1548
Bbv12I	GWGCWC	2 cut(s)	404, 752
BbvCI	CCTCAGC	1 cut(s)	1404
BbvI	GCAGC	4 cut(s)	661, 965, 1183, 1642
BccI	CCATC	1 cut(s)	955
BceAI	ACGGC	3 cut(s)	329, 505, 619
BciT130I	CCWGG	2 cut(s)	1325, 1414
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	3 cut(s)	220, 702, 1571
BfaI	CTAG	3 cut(s)	1134, 1382, 1610
BfmI	CTRYAG	1 cut(s)	951
BfoI	RGCGCY	1 cut(s)	633
BfuAI	ACCTGC	1 cut(s)	1223
BglI	GCCNNNNNGGC	1 cut(s)	581
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	3 cut(s)	431, 1325, 1414
Bme18I	GGWCC	2 cut(s)	291, 1409
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	3 cut(s)	291, 1409, 1762
BmiI	GGNNCC	5 cut(s)	490, 585, 615, 1410, 1411
BmrFI	CCNGG	3 cut(s)	431, 1325, 1414
BmtI	GCTAGC	1 cut(s)	1137
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	1548
BpmI	CTGGAG	3 cut(s)	1418, 1629, 1751
Bpu10I	CCTNAGC	1 cut(s)	1404
BpuEI	CTTGAG	1 cut(s)	1727
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	6 cut(s)	107, 234, 342, 518, 567, 573
BsaI	GGTCTC	1 cut(s)	1571
BsaJI	CCNNGG	6 cut(s)	330, 576, 760, 812, 1412, 1682
BsaWI	WCCGGW	3 cut(s)	313, 524, 586
BsaXI	ACNNNNNCTCC	4 cut(s)	486, 489, 516, 519
Bsc4I	CCNNNNNNNGG	3 cut(s)	465, 915, 1683
Bse1I	ACTGG	3 cut(s)	18, 1646, 1779
Bse3DI	GCAATG	4 cut(s)	49, 1491, 1518, 1722
BseBI	CCWGG	2 cut(s)	1325, 1414
BseDI	CCNNGG	6 cut(s)	330, 576, 760, 812, 1412, 1682
BseGI	GGATG	2 cut(s)	1377, 1629
BseLI	CCNNNNNNNGG	3 cut(s)	465, 915, 1683
BseMI	GCAATG	4 cut(s)	49, 1491, 1518, 1722
BseMII	CTCAG	4 cut(s)	140, 222, 1395, 1521
BseNI	ACTGG	3 cut(s)	18, 1646, 1779
BsePI	GCGCGC	1 cut(s)	453
BseRI	GAGGAG	3 cut(s)	510, 513, 572
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	4 cut(s)	661, 965, 1183, 1642
BsgI	GTGCAG	1 cut(s)	1819
Bsh1236I	CGCG	6 cut(s)	263, 265, 299, 332, 455, 578
Bsh1285I	CGRYCG	3 cut(s)	127, 224, 327
BshFI	GGCC	6 cut(s)	5, 126, 593, 662, 946, 1764
BsiEI	CGRYCG	3 cut(s)	127, 224, 327
BsiHKAI	GWGCWC	2 cut(s)	404, 752
BsiSI	CCGG	8 cut(s)	127, 186, 314, 431, 486, 492, 525, 587
BslFI	GGGAC	2 cut(s)	1395, 1659
BslI	CCNNNNNNNGG	3 cut(s)	465, 915, 1683
BsmAI	GTCTC	3 cut(s)	220, 702, 1571
BsmFI	GGGAC	2 cut(s)	1395, 1659
BsnI	GGCC	6 cut(s)	5, 126, 593, 662, 946, 1764
Bso31I	GGTCTC	1 cut(s)	1571
Bsp1286I	GDGCHC	3 cut(s)	323, 404, 752
Bsp1407I	TGTACA	1 cut(s)	1044
Bsp143I	GATC	6 cut(s)	116, 200, 211, 221, 244, 667
Bsp19I	CCATGG	1 cut(s)	1682
Bsp68I	TCGCGA	1 cut(s)	299
BspANI	GGCC	6 cut(s)	5, 126, 593, 662, 946, 1764
BspCNI	CTCAG	4 cut(s)	141, 221, 1396, 1522
BspFNI	CGCG	6 cut(s)	263, 265, 299, 332, 455, 578
BspLI	GGNNCC	5 cut(s)	490, 585, 615, 1410, 1411
BspMAI	CTGCAG	1 cut(s)	955
BspMI	ACCTGC	1 cut(s)	1223
BspOI	GCTAGC	1 cut(s)	1137
BspPI	GGATC	3 cut(s)	195, 206, 662
BspTNI	GGTCTC	1 cut(s)	1571
BsrDI	GCAATG	4 cut(s)	49, 1491, 1518, 1722
BsrGI	TGTACA	1 cut(s)	1044
BsrI	ACTGG	3 cut(s)	18, 1646, 1779
BssECI	CCNNGG	6 cut(s)	330, 576, 760, 812, 1412, 1682
BssHII	GCGCGC	1 cut(s)	453
BssMI	GATC	6 cut(s)	116, 200, 211, 221, 244, 667
BssNAI	GTATAC	1 cut(s)	1330
BssNI	GRCGYC	6 cut(s)	107, 234, 342, 518, 567, 573
BssT1I	CCWWGG	3 cut(s)	760, 812, 1682
Bst1107I	GTATAC	1 cut(s)	1330
Bst2UI	CCWGG	2 cut(s)	1325, 1414
Bst4CI	ACNGT	3 cut(s)	295, 394, 478
Bst6I	CTCTTC	2 cut(s)	197, 281
BstACI	GRCGYC	6 cut(s)	107, 234, 342, 518, 567, 573
BstAUI	TGTACA	1 cut(s)	1044
BstC8I	GCNNGC	3 cut(s)	255, 455, 1135
BstDEI	CTNAG	7 cut(s)	13, 37, 149, 208, 1404, 1497, 1530
BstDSI	CCRYGG	3 cut(s)	330, 576, 1682
BstF5I	GGATG	2 cut(s)	1377, 1629
BstFNI	CGCG	6 cut(s)	263, 265, 299, 332, 455, 578
BstH2I	RGCGCY	1 cut(s)	633
BstHHI	GCGC	5 cut(s)	265, 455, 457, 632, 1660
BstKTI	GATC	6 cut(s)	119, 203, 214, 224, 247, 670
BstMAI	GTCTC	3 cut(s)	220, 702, 1571
BstMBI	GATC	6 cut(s)	116, 200, 211, 221, 244, 667
BstMCI	CGRYCG	3 cut(s)	127, 224, 327
BstMWI	GCNNNNNNNGC	6 cut(s)	159, 581, 590, 931, 1196, 1244
BstNI	CCWGG	2 cut(s)	1325, 1414
BstNSI	RCATGY	2 cut(s)	52, 1778
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	3 cut(s)	429, 1323, 1412
BstSFI	CTRYAG	1 cut(s)	951
BstUI	CGCG	6 cut(s)	263, 265, 299, 332, 455, 578
BstV1I	GCAGC	4 cut(s)	661, 965, 1183, 1642
BstV2I	GAAGAC	1 cut(s)	1548
BstX2I	RGATCY	2 cut(s)	211, 667
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	2 cut(s)	211, 667
BstZ17I	GTATAC	1 cut(s)	1330
BstZI	CGGCCG	1 cut(s)	124
BsuRI	GGCC	6 cut(s)	5, 126, 593, 662, 946, 1764
BtgI	CCRYGG	3 cut(s)	330, 576, 1682
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	1377, 1629
BtsI	GCAGTG	2 cut(s)	67, 613
BtsIMutI	CAGTG	8 cut(s)	6, 25, 37, 67, 613, 693, 701, 1347
BtuMI	TCGCGA	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	1223
Cac8I	GCNNGC	3 cut(s)	255, 455, 1135
CfoI	GCGC	5 cut(s)	265, 455, 457, 632, 1660
Cfr13I	GGNCC	3 cut(s)	291, 1409, 1762
Cfr42I	CCGCGG	2 cut(s)	333, 579
CseI	GACGC	6 cut(s)	96, 242, 350, 526, 556, 581
Csp6I	GTAC	3 cut(s)	709, 1045, 1786
CviQI	GTAC	3 cut(s)	709, 1045, 1786
DdeI	CTNAG	7 cut(s)	13, 37, 149, 208, 1404, 1497, 1530
DpnI	GATC	6 cut(s)	118, 202, 213, 223, 246, 669
DpnII	GATC	6 cut(s)	116, 200, 211, 221, 244, 667
DraI	TTTAAA	1 cut(s)	1563
EaeI	YGGCCR	4 cut(s)	3, 124, 591, 660
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	197, 281
EarI	CTCTTC	2 cut(s)	197, 281
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	3 cut(s)	760, 812, 1682
Eco24I	GRGCYC	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	1571
Eco32I	GATATC	1 cut(s)	1474
Eco47I	GGWCC	2 cut(s)	291, 1409
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	725
EcoO109I	RGGNCCY	1 cut(s)	1409
EcoRI	GAATTC	2 cut(s)	374, 736
EcoRII	CCWGG	2 cut(s)	1323, 1412
EcoRV	GATATC	1 cut(s)	1474
EcoT14I	CCWWGG	3 cut(s)	760, 812, 1682
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	3 cut(s)	760, 812, 1682
FaqI	GGGAC	2 cut(s)	1395, 1659
FauI	CCCGC	2 cut(s)	262, 645
FblI	GTMKAC	2 cut(s)	570, 1329
FokI	GGATG	2 cut(s)	1364, 1616
FriOI	GRGCYC	1 cut(s)	323
FspBI	CTAG	3 cut(s)	1134, 1382, 1610
FspI	TGCGCA	1 cut(s)	1659
GlaI	GCGC	5 cut(s)	264, 454, 456, 631, 1659
GsuI	CTGGAG	3 cut(s)	1418, 1629, 1751
HaeII	RGCGCY	1 cut(s)	633
HaeIII	GGCC	6 cut(s)	5, 126, 593, 662, 946, 1764
HapII	CCGG	8 cut(s)	127, 186, 314, 431, 486, 492, 525, 587
HgaI	GACGC	6 cut(s)	96, 242, 350, 526, 556, 581
HhaI	GCGC	5 cut(s)	265, 455, 457, 632, 1660
Hin1I	GRCGYC	6 cut(s)	107, 234, 342, 518, 567, 573
Hin6I	GCGC	5 cut(s)	263, 453, 455, 630, 1658
HinP1I	GCGC	5 cut(s)	263, 453, 455, 630, 1658
HincII	GTYRAC	3 cut(s)	571, 879, 1212
HindII	GTYRAC	3 cut(s)	571, 879, 1212
HindIII	AAGCTT	1 cut(s)	1188
HinfI	GANTC	8 cut(s)	145, 189, 542, 860, 1158, 1337, 1350, 1699
HpaII	CCGG	8 cut(s)	127, 186, 314, 431, 486, 492, 525, 587
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	6 cut(s)	571, 691, 879, 1045, 1212, 1330
Hpy188III	TCNNGA	9 cut(s)	142, 225, 298, 409, 857, 1162, 1397, 1538, 1768
Hpy8I	GTNNAC	6 cut(s)	571, 691, 879, 1045, 1212, 1330
HpyAV	CCTTC	2 cut(s)	530, 1673
HpyCH4III	ACNGT	3 cut(s)	295, 394, 478
HpyCH4IV	ACGT	4 cut(s)	274, 357, 1287, 1788
HpyF10VI	GCNNNNNNNGC	6 cut(s)	159, 581, 590, 931, 1196, 1244
HpyF3I	CTNAG	7 cut(s)	13, 37, 149, 208, 1404, 1497, 1530
HpySE526I	ACGT	4 cut(s)	274, 357, 1287, 1788
Hsp92I	GRCGYC	6 cut(s)	107, 234, 342, 518, 567, 573
HspAI	GCGC	5 cut(s)	263, 453, 455, 630, 1658
KflI	GGGWCCC	1 cut(s)	1409
KspI	CCGCGG	2 cut(s)	333, 579
Kzo9I	GATC	6 cut(s)	116, 200, 211, 221, 244, 667
LmnI	GCTCC	8 cut(s)	93, 167, 311, 407, 488, 589, 747, 1012
Lsp1109I	GCAGC	4 cut(s)	661, 965, 1183, 1642
MaeI	CTAG	3 cut(s)	1134, 1382, 1610
MaeII	ACGT	4 cut(s)	274, 357, 1287, 1788
MaeIII	GTNAC	4 cut(s)	32, 62, 358, 406
MalI	GATC	6 cut(s)	118, 202, 213, 223, 246, 669
MboI	GATC	6 cut(s)	116, 200, 211, 221, 244, 667
MflI	RGATCY	2 cut(s)	211, 667
MhlI	GDGCHC	3 cut(s)	323, 404, 752
MlsI	TGGCCA	2 cut(s)	5, 593
MluNI	TGGCCA	2 cut(s)	5, 593
MlyI	GAGTC	2 cut(s)	183, 551
MmeI	TCCRAC	3 cut(s)	228, 1035, 1166
Mox20I	TGGCCA	2 cut(s)	5, 593
MroXI	GAANNNNTTC	3 cut(s)	710, 1314, 1425
MscI	TGGCCA	2 cut(s)	5, 593
MseI	TTAA	9 cut(s)	84, 348, 743, 939, 1086, 1113, 1434, 1562, 1791
MslI	CAYNNNNRTG	2 cut(s)	1233, 1634
Msp20I	TGGCCA	2 cut(s)	5, 593
MspA1I	CMGCKG	3 cut(s)	332, 578, 652
MspI	CCGG	8 cut(s)	127, 186, 314, 431, 486, 492, 525, 587
MspR9I	CCNGG	3 cut(s)	431, 1325, 1414
MvaI	CCWGG	2 cut(s)	1325, 1414
MvnI	CGCG	6 cut(s)	263, 265, 299, 332, 455, 578
MwoI	GCNNNNNNNGC	6 cut(s)	159, 581, 590, 931, 1196, 1244
NciI	CCSGG	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	1682
NdeII	GATC	6 cut(s)	116, 200, 211, 221, 244, 667
NheI	GCTAGC	1 cut(s)	1133
NlaIV	GGNNCC	5 cut(s)	490, 585, 615, 1410, 1411
NmeAIII	GCCGAG	2 cut(s)	1097, 1297
NmuCI	GTSAC	4 cut(s)	32, 62, 358, 406
NruI	TCGCGA	1 cut(s)	299
NsbI	TGCGCA	1 cut(s)	1659
NspI	RCATGY	2 cut(s)	52, 1778
PalAI	GGCGCGCC	1 cut(s)	453
PauI	GCGCGC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 240
PdmI	GAANNNNTTC	3 cut(s)	710, 1314, 1425
PfeI	GAWTC	6 cut(s)	145, 860, 1158, 1337, 1350, 1699
PflFI	GACNNNGTC	2 cut(s)	68, 520
Ple19I	CGATCG	1 cut(s)	224
PleI	GAGTC	2 cut(s)	183, 550
PpsI	GAGTC	2 cut(s)	183, 550
PpuMI	RGGWCCY	1 cut(s)	1409
PshAI	GACNNNNGTC	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	1409
Psp6I	CCWGG	2 cut(s)	1323, 1412
PspGI	CCWGG	2 cut(s)	1323, 1412
PspN4I	GGNNCC	5 cut(s)	490, 585, 615, 1410, 1411
PspPI	GGNCC	3 cut(s)	291, 1409, 1762
PspPPI	RGGWCCY	1 cut(s)	1409
PstI	CTGCAG	1 cut(s)	955
PsuI	RGATCY	2 cut(s)	211, 667
PsyI	GACNNNGTC	2 cut(s)	68, 520
PteI	GCGCGC	1 cut(s)	453
PvuI	CGATCG	1 cut(s)	224
RruI	TCGCGA	1 cut(s)	299
RsaI	GTAC	3 cut(s)	710, 1046, 1787
RsaNI	GTAC	3 cut(s)	709, 1045, 1786
RseI	CAYNNNNRTG	2 cut(s)	1233, 1634
SacII	CCGCGG	2 cut(s)	333, 579
SalI	GTCGAC	1 cut(s)	569
SaqAI	TTAA	9 cut(s)	84, 348, 743, 939, 1086, 1113, 1434, 1562, 1791
Sau3AI	GATC	6 cut(s)	116, 200, 211, 221, 244, 667
Sau96I	GGNCC	3 cut(s)	291, 1409, 1762
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	2 cut(s)	183, 551
ScrFI	CCNGG	3 cut(s)	431, 1325, 1414
SduI	GDGCHC	3 cut(s)	323, 404, 752
SfcI	CTRYAG	1 cut(s)	951
Sfr303I	CCGCGG	2 cut(s)	333, 579
SgrBI	CCGCGG	2 cut(s)	333, 579
SgrDI	CGTCGACG	1 cut(s)	569
SgsI	GGCGCGCC	1 cut(s)	453
SinI	GGWCC	2 cut(s)	291, 1409
SmiMI	CAYNNNNRTG	2 cut(s)	1233, 1634
SmlI	CTYRAG	1 cut(s)	1742
SmoI	CTYRAG	1 cut(s)	1742
SspMI	CTAG	3 cut(s)	1134, 1382, 1610
StyD4I	CCNGG	3 cut(s)	429, 1323, 1412
StyI	CCWWGG	3 cut(s)	760, 812, 1682
TaaI	ACNGT	3 cut(s)	295, 394, 478
TaiI	ACGT	4 cut(s)	277, 360, 1290, 1791
TaqI	TCGA	3 cut(s)	141, 224, 570
TatI	WGTACW	2 cut(s)	708, 1044
TauI	GCSGC	8 cut(s)	126, 239, 260, 263, 332, 578, 581, 584
TfiI	GAWTC	6 cut(s)	145, 860, 1158, 1337, 1350, 1699
Tru1I	TTAA	9 cut(s)	84, 348, 743, 939, 1086, 1113, 1434, 1562, 1791
Tru9I	TTAA	9 cut(s)	84, 348, 743, 939, 1086, 1113, 1434, 1562, 1791
TscAI	CASTG	8 cut(s)	13, 25, 37, 67, 613, 693, 708, 1347
TseFI	GTSAC	4 cut(s)	32, 62, 358, 406
TseI	GCWGC	4 cut(s)	649, 953, 1196, 1655
Tsp45I	GTSAC	4 cut(s)	32, 62, 358, 406
TspDTI	ATGAA	6 cut(s)	703, 729, 1307, 1366, 1480, 1733
TspGWI	ACGGA	4 cut(s)	381, 394, 428, 1140
TspRI	CASTG	8 cut(s)	13, 25, 37, 67, 613, 693, 708, 1347
Tth111I	GACNNNGTC	2 cut(s)	68, 520
VpaK11BI	GGWCC	2 cut(s)	291, 1409
XapI	RAATTY	3 cut(s)	374, 736, 897
XceI	RCATGY	2 cut(s)	52, 1778
XmiI	GTMKAC	2 cut(s)	570, 1329
XmnI	GAANNNNTTC	3 cut(s)	710, 1314, 1425
XspI	CTAG	3 cut(s)	1134, 1382, 1610
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.