Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006380.1

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 931

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006380.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgatcattgttgctcacaataatgacttgttcgctttgctggtgtcctataactttaccgagataaaaagcaatgtgttcaagcgatatagtaaggaaaacattcatagcctgaacgctggtgtggtattcgtctgtgaaatgatcatcgatatcgtaaagcactcgttcattgctaagttcaatgacataaagccctttgcatactctgagtttcttgaaggacctatgcaagcagacgttcaaacaggatcaagagctttgcctactttcatcaactatactcgtgatggtatagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

100

Amino Acids

11.41

Weight (kDa)

5.86

Isoelectric Point (pI)

24.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	82, 184, 221, 245
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AlwI	GGATC	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	285
BccI	CCATC	1 cut(s)	284
BclI	TGATCA	2 cut(s)	3, 144
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	150
Bse3DI	GCAATG	2 cut(s)	79, 171
BseCI	ATCGAT	1 cut(s)	150
BseMI	GCAATG	2 cut(s)	79, 171
BseMII	CTCAG	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	3, 144, 251
BspCNI	CTCAG	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	150
BspPI	GGATC	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	79, 171
BssMI	GATC	3 cut(s)	3, 144, 251
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	177, 210
BstKTI	GATC	3 cut(s)	6, 147, 254
BstMBI	GATC	3 cut(s)	3, 144, 251
Bsu15I	ATCGAT	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	150
CviJI	RGCY	3 cut(s)	111, 196, 260
CviKI_1	RGCY	3 cut(s)	111, 196, 260
DdeI	CTNAG	2 cut(s)	177, 210
DpnI	GATC	3 cut(s)	5, 146, 253
DpnII	GATC	3 cut(s)	3, 144, 251
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	154
FaiI	YATR	8 cut(s)	51, 90, 108, 191, 205, 230, 282, 296
FbaI	TGATCA	2 cut(s)	3, 144
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	3 cut(s)	218, 255, 287
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	2 cut(s)	203, 232
HpyF3I	CTNAG	2 cut(s)	177, 210
HpySE526I	ACGT	1 cut(s)	240
Ksp22I	TGATCA	2 cut(s)	3, 144
Kzo9I	GATC	3 cut(s)	3, 144, 251
LpnPI	CCDG	4 cut(s)	26, 105, 125, 234
MaeII	ACGT	1 cut(s)	240
MalI	GATC	3 cut(s)	5, 146, 253
MboI	GATC	3 cut(s)	3, 144, 251
MroXI	GAANNNNTTC	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	21
NdeII	GATC	3 cut(s)	3, 144, 251
PdmI	GAANNNNTTC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	224
PspPPI	RGGWCCY	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	21
Sau3AI	GATC	3 cut(s)	3, 144, 251
Sau96I	GGNCC	1 cut(s)	224
SetI	ASST	3 cut(s)	229, 243, 262
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	150
TspDTI	ATGAA	3 cut(s)	95, 160, 262
VpaK11BI	GGWCC	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.