Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

27119144 .. 27122042

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAGAAGCTCCAGCTCTTTAGGGGCAACACAATCCTCATCAAGGCAATTACTTTGTCAAGCTGCATTGTTGCTCACAATAATGACTTGTTCGCTTTGCTGGTGTCCTATAACTTTGCCGAGATAAAAAGCAATGTGTTCAAGCGATATAGTAAGGAAAACATTCATAGCCTGGTATACTTTGGTGAGTTTGCTTCCTTTTATTGGCTTATAGCGACTATGTTAATTAAACTAGATCGATGTGGTTCTGTGTCCGATGAATTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

89

Amino Acids

10.23

Weight (kDa)

7.78

Isoelectric Point (pI)

23.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	11 - 81	2.8e-15	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	43, 204
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	3 cut(s)	10, 16, 63
AluI	AGCT	3 cut(s)	10, 16, 63
ApeKI	GCWGC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 204
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	43, 204
BseMI	GCAATG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	43, 204
Bsp143I	GATC	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	139
BssMI	GATC	1 cut(s)	235
BssNAI	GTATAC	1 cut(s)	178
Bst1107I	GTATAC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	173
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	50
BstZ17I	GTATAC	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	238
CviJI	RGCY	5 cut(s)	10, 16, 63, 171, 208
CviKI_1	RGCY	5 cut(s)	10, 16, 63, 171, 208
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	171
FaiI	YATR	6 cut(s)	111, 150, 168, 178, 212, 221
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	4 cut(s)	26, 86, 158, 185
Lsp1109I	GCAGC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	233
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MluCI	AATT	4 cut(s)	48, 225, 260, 265
MnlI	CCTC	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	3 cut(s)	224, 228, 263
MslI	CAYNNNNRTG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	145
PacI	TTAATTAA	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	224, 228, 263
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	3 cut(s)	12, 18, 65
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	4 cut(s)	48, 225, 260, 265
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	171
TaqI	TCGA	1 cut(s)	238
TasI	AATT	4 cut(s)	48, 225, 260, 265
Tru1I	TTAA	3 cut(s)	224, 228, 263
Tru9I	TTAA	3 cut(s)	224, 228, 263
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.