Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

71889749 .. 71898918

Gene Structure 9170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG511100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCTTCAAATGCCCGGATCCGCGTGCATACCGGTCAGAGAAGTTGATTCACCCGGAAGCTCAACTCCCCCCAATCCAAACAATCTGAGTTCCCTTCACCAGCAGTTCCCGGATCCCACCTGCAGACTCGCTAGGTCTCACCTGCCGACGGTGCAGCTGTCATCTGGTTCAAATCCGGAAAGACTTTCCGGAACCTTTGCTCAGACAGGTGGTGGAGAGACTCGATCCTCTGATGACAAAAGAGAATTGTTTACCAATCTGGTAAAGAATGGTCAGCTAGAAATCGTTGGAGGTGGCTGGGTGATGAATGATGAGCTGGGCGACAAGAACAAAAACTCAGTAGAGATTAGAGAAGCCAAAGGACATGGTATTCGAAATCAGAAGAAAGAGATGCAAAGGAAGTTACGTTTGAAGAAGAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

141

Amino Acids

15.46

Weight (kDa)

9.64

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	128, 150
Acc36I	ACCTGC	2 cut(s)	128, 150
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	2 cut(s)	175, 188
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	5 cut(s)	12, 25, 107, 120, 219
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	8, 171, 412
AluBI	AGCT	5 cut(s)	60, 157, 277, 316, 423
AluI	AGCT	5 cut(s)	60, 157, 277, 316, 423
Alw26I	GTCTC	2 cut(s)	141, 212
AlwI	GGATC	5 cut(s)	12, 25, 107, 120, 219
Aor13HI	TCCGGA	2 cut(s)	175, 188
ApeKI	GCWGC	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AsiGI	ACCGGT	1 cut(s)	31
AsuC2I	CCSGG	3 cut(s)	15, 54, 110
AsuHPI	GGTGA	4 cut(s)	42, 89, 131, 313
AsuII	TTCGAA	1 cut(s)	373
BamHI	GGATCC	2 cut(s)	17, 112
BbvI	GCAGC	1 cut(s)	166
BcnI	CCSGG	3 cut(s)	15, 54, 110
BcoDI	GTCTC	2 cut(s)	141, 212
BfaI	CTAG	3 cut(s)	132, 278, 424
BfmI	CTRYAG	1 cut(s)	121
BfuAI	ACCTGC	2 cut(s)	128, 150
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	3 cut(s)	15, 54, 110
BmiI	GGNNCC	3 cut(s)	19, 114, 193
BmrFI	CCNGG	3 cut(s)	15, 54, 110
BmsI	GCATC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	373
BpuMI	CCSGG	3 cut(s)	15, 54, 110
BsaI	GGTCTC	1 cut(s)	141
BsaWI	WCCGGW	3 cut(s)	31, 175, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	31
BseAI	TCCGGA	2 cut(s)	175, 188
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	77, 215, 351
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	2 cut(s)	297, 316
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	23
BshTI	ACCGGT	1 cut(s)	31
BsiSI	CCGG	6 cut(s)	15, 32, 54, 110, 176, 189
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	141, 212
Bso31I	GGTCTC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	373
Bsp13I	TCCGGA	2 cut(s)	175, 188
Bsp143I	GATC	3 cut(s)	17, 112, 224
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	3 cut(s)	78, 214, 350
BspEI	TCCGGA	2 cut(s)	175, 188
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	19, 114, 193
BspMAI	CTGCAG	1 cut(s)	125
BspMI	ACCTGC	2 cut(s)	128, 150
BspPI	GGATC	5 cut(s)	12, 25, 107, 120, 219
BspQI	GCTCTTC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssMI	GATC	3 cut(s)	17, 112, 224
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	86, 201, 337
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	3 cut(s)	20, 115, 227
BstMAI	GTCTC	2 cut(s)	141, 212
BstMBI	GATC	3 cut(s)	17, 112, 224
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 151
BstSCI	CCNGG	3 cut(s)	13, 52, 108
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	2 cut(s)	17, 112
BstYI	RGATCY	2 cut(s)	17, 112
BveI	ACCTGC	2 cut(s)	128, 150
Cac8I	GCNNGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	31
CspAI	ACCGGT	1 cut(s)	31
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	7 cut(s)	60, 157, 277, 297, 316, 356, 423
CviKI_1	RGCY	7 cut(s)	60, 157, 277, 297, 316, 356, 423
DdeI	CTNAG	3 cut(s)	86, 201, 337
DpnI	GATC	3 cut(s)	19, 114, 226
DpnII	GATC	3 cut(s)	17, 112, 224
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	368
FaiI	YATR	2 cut(s)	29, 366
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	3 cut(s)	132, 278, 424
GluI	GCNGC	1 cut(s)	155
GsaI	CCCAGC	2 cut(s)	301, 320
HapII	CCGG	6 cut(s)	15, 32, 54, 110, 176, 189
Hin1II	CATG	1 cut(s)	368
HinfI	GANTC	3 cut(s)	47, 126, 220
HpaII	CCGG	6 cut(s)	15, 32, 54, 110, 176, 189
HphI	GGTGA	4 cut(s)	42, 89, 131, 313
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	5 cut(s)	38, 87, 204, 232, 381
Hpy188III	TCNNGA	2 cut(s)	176, 189
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	27, 123, 154, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 151
HpyF3I	CTNAG	3 cut(s)	86, 201, 337
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	1 cut(s)	368
Kpn2I	TCCGGA	2 cut(s)	175, 188
Kzo9I	GATC	3 cut(s)	17, 112, 224
LguI	GCTCTTC	1 cut(s)	413
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	3 cut(s)	132, 278, 424
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	3 cut(s)	19, 114, 226
MboI	GATC	3 cut(s)	17, 112, 224
MboII	GAAGA	2 cut(s)	394, 424
MflI	RGATCY	2 cut(s)	17, 112
MluCI	AATT	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	120, 214
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	2 cut(s)	238, 284
MroI	TCCGGA	2 cut(s)	175, 188
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	6 cut(s)	15, 32, 54, 110, 176, 189
MspR9I	CCNGG	3 cut(s)	15, 54, 110
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	10, 151
NciI	CCSGG	3 cut(s)	15, 54, 110
NdeII	GATC	3 cut(s)	17, 112, 224
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	3 cut(s)	19, 114, 193
NspV	TTCGAA	1 cut(s)	373
PaqCI	CACCTGC	2 cut(s)	128, 150
PciSI	GCTCTTC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	108
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	2 cut(s)	120, 214
PpsI	GAGTC	2 cut(s)	120, 214
PspFI	CCCAGC	2 cut(s)	297, 316
PspN4I	GGNNCC	3 cut(s)	19, 114, 193
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	17, 112
PvuII	CAGCTG	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	413
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	3 cut(s)	17, 112, 224
SchI	GAGTC	2 cut(s)	120, 214
ScrFI	CCNGG	3 cut(s)	15, 54, 110
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	373
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	3 cut(s)	132, 278, 424
StyD4I	CCNGG	3 cut(s)	13, 52, 108
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	223, 373
TasI	AATT	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	320
XspI	CTAG	3 cut(s)	132, 278, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.