Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

26352184 .. 26353751

Gene Structure 1568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTTCTCTGTATTAGTACAGCGAAGAGCAAAGGTGGAGATGGTAGCTTGATTGGTAATGATTCAAAAAGATCAATGGGACCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGAAAATGATTTTTTGCGAACTAGAAGTGGAGATTACTTGTATCTTGGAATAGTGATTGTGGTGGTATTGTGTCTTGTCTGTGAAAACTATAAGTTGCACAATTGGAAGGCCGATAGAGTACTAGGTACTAATTATGTGAAGTTTTATACACAATATGATCTTGCTCTTTGTGTACAATATCTTGTAGAACTAAGAGTTCTAGTTATCTGGTGTCTAAGTGCAATTACTTTGTCAAGCTGCATTGTTGCTCACAATAATGACTTGTTCGCTTTGCTGGTGTCCTATAACTTTGCCGAGATAAAAAGCAATGTGTTCAAGCGATATAGTAAGGAAAACATTCATAGCCTGGTATACTTTGATTCTGTGGAGAGGTTCCACATTTATGCATTTATCATATTCATCCTAGCTCAAAACATTCTGGAGGAAACATTTGATGGGAAACTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

188

Amino Acids

21.56

Weight (kDa)

6.07

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	107 - 180	8.9e-22	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	468
AclWI	GGATC	1 cut(s)	121
AfaI	GTAC	4 cut(s)	19, 237, 244, 291
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	66, 433
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	3 cut(s)	48, 354, 524
AluI	AGCT	3 cut(s)	48, 354, 524
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	354
AsiGI	ACCGGT	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	2 cut(s)	35, 545
BciT130I	CCWGG	1 cut(s)	464
BfaI	CTAG	4 cut(s)	138, 239, 317, 521
BisI	GCNGC	1 cut(s)	355
BlsI	GCNGC	1 cut(s)	356
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	81, 491
BmrFI	CCNGG	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	557
BsaWI	WCCGGW	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	464
BseGI	GGATG	1 cut(s)	516
BseMI	GCAATG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	71, 113, 274
BspANI	GGCC	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	81, 491
BspPI	GGATC	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	82
BssMI	GATC	3 cut(s)	71, 113, 274
BssNAI	GTATAC	1 cut(s)	469
Bst1107I	GTATAC	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	308, 332
BstF5I	GGATG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	74, 116, 277
BstMBI	GATC	3 cut(s)	71, 113, 274
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BstZ17I	GTATAC	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	4 cut(s)	18, 236, 243, 290
CspAI	ACCGGT	1 cut(s)	82
CviJI	RGCY	5 cut(s)	48, 227, 354, 462, 524
CviKI_1	RGCY	5 cut(s)	48, 227, 354, 462, 524
CviQI	GTAC	4 cut(s)	18, 236, 243, 290
DdeI	CTNAG	2 cut(s)	308, 332
DpnI	GATC	3 cut(s)	73, 115, 276
DpnII	GATC	3 cut(s)	71, 113, 274
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	462
EcoT22I	ATGCAT	1 cut(s)	505
FaqI	GGGAC	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	1 cut(s)	355
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	1 cut(s)	355
FspBI	CTAG	4 cut(s)	138, 239, 317, 521
GluI	GCNGC	1 cut(s)	355
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	83
HinfI	GANTC	2 cut(s)	62, 476
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	290, 469
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	2 cut(s)	290, 469
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	214, 338, 357, 503
HpyF3I	CTNAG	2 cut(s)	308, 332
Kzo9I	GATC	3 cut(s)	71, 113, 274
LguI	GCTCTTC	1 cut(s)	20
LpnPI	CCDG	6 cut(s)	96, 310, 377, 449, 476, 521
Lsp1109I	GCAGC	1 cut(s)	341
MaeI	CTAG	4 cut(s)	138, 239, 317, 521
MalI	GATC	3 cut(s)	73, 115, 276
MboI	GATC	3 cut(s)	71, 113, 274
MboII	GAAGA	1 cut(s)	37
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	3 cut(s)	217, 247, 339
MnlI	CCTC	4 cut(s)	100, 103, 480, 532
Mph1103I	ATGCAT	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	1 cut(s)	565
MslI	CAYNNNNRTG	2 cut(s)	372, 498
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	464
MunI	CAATTG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	464
NdeII	GATC	3 cut(s)	71, 113, 274
NlaIV	GGNNCC	2 cut(s)	81, 491
NmeAIII	GCCGAG	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	62, 476
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	81, 491
PspPI	GGNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	4 cut(s)	19, 237, 244, 291
RsaNI	GTAC	4 cut(s)	18, 236, 243, 290
RseI	CAYNNNNRTG	2 cut(s)	372, 498
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	565
SatI	GCNGC	1 cut(s)	355
Sau3AI	GATC	3 cut(s)	71, 113, 274
Sau96I	GGNCC	1 cut(s)	80
ScaI	AGTACT	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	6 cut(s)	37, 50, 244, 356, 491, 526
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	372, 498
Sse9I	AATT	3 cut(s)	217, 247, 339
SspMI	CTAG	4 cut(s)	138, 239, 317, 521
StyD4I	CCNGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	561
TasI	AATT	3 cut(s)	217, 247, 339
TatI	WGTACW	3 cut(s)	17, 235, 289
TfiI	GAWTC	2 cut(s)	62, 476
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TseI	GCWGC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	446, 505
VpaK11BI	GGWCC	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	4 cut(s)	138, 239, 317, 521
ZrmI	AGTACT	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.