Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Forward (+)

31623535 .. 31625161

Gene Structure 1627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG145900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACAAGATCGAGTTCTTCGACATCGACAGTGGGCCGTGGAACGGTGGAAGCAAAGCTGGAGAGTCAATTACAAAGGCGACACTCTGAGAAGTTGAAGGCAATTTTGGTGCCGCACTCGCATAACGATTCGAGGTGGACGAGTAATATGAGAGGCAGTCCAGGCATATACTTTGACACCATTTTTGACACACTTTCCAAGGATATTCAGCCCAGTTTATATGGGAAGAGATGTCTTATCTGGAAAGGTGGTGGAGAGACTCGATCCTCTGATGACAAAAGAGAATTGTTCACCAATCTGGTAAAGTATGGTCAGCTAGAAATCGTTGGAGGTGGCTGGGTGATGAATGATGAGCTGATAGATGTTGGCTTTTTCATATGTTTTGATTCGTTTCTCTTGCTATTGACTATCATGCCAACAAGAATTTTGATTACCCTGTGGAGGCTTGTGCATACAAGGCAGTTAAGAGGCCATCTGCAGCAGAGCTGTCTGATTTTGGGTGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

169

Amino Acids

19.18

Weight (kDa)

9.33

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	34 - 120	3.9e-08	Glycosyl hydrolases family 38 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	109
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	43, 441
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	4 cut(s)	58, 316, 355, 486
AluI	AGCT	4 cut(s)	58, 316, 355, 486
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	258
AoxI	GGCC	2 cut(s)	34, 469
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	423
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	283, 352
BanI	GGYRCC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	1 cut(s)	480
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	113, 479
BlsI	GCNGC	2 cut(s)	114, 480
Bme1390I	CCNGG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	37, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 441
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	37, 198
BseLI	CCNNNNNNNGG	2 cut(s)	43, 441
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	490
BseYI	CCCAGC	1 cut(s)	336
BshFI	GGCC	2 cut(s)	36, 471
BshNI	GGYRCC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	43, 441
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	36, 471
Bsp143I	GATC	2 cut(s)	8, 263
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	2 cut(s)	36, 471
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	37, 198
BssMI	GATC	2 cut(s)	8, 263
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	31, 46
Bst6I	CTCTTC	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	11, 266
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	8, 263
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 162, 457
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	36, 471
BtgI	CCRYGG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	10, 265
DpnII	GATC	2 cut(s)	8, 263
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	415
FatI	CATG	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	113, 479
Fsp4HI	GCNGC	2 cut(s)	113, 479
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	113, 479
GsaI	CCCAGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	36, 471
Hin1II	CATG	1 cut(s)	415
HinfI	GANTC	4 cut(s)	64, 128, 259, 386
HphI	GGTGA	2 cut(s)	283, 352
Hpy166II	GTNNAC	2 cut(s)	138, 291
Hpy188I	TCNGA	3 cut(s)	88, 271, 492
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	138, 291
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	2 cut(s)	31, 46
HpyCH4V	TGCA	2 cut(s)	451, 478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 162, 457
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	8, 263
LpnPI	CCDG	8 cut(s)	44, 147, 174, 226, 226, 284, 322, 449
Lsp1109I	GCAGC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	317
MalI	GATC	2 cut(s)	10, 265
MboI	GATC	2 cut(s)	8, 263
MboII	GAAGA	2 cut(s)	9, 238
MluCI	AATT	4 cut(s)	68, 102, 284, 423
MlyI	GAGTC	2 cut(s)	73, 253
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	6 cut(s)	126, 146, 277, 323, 435, 461
MseI	TTAA	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	118, 162, 457
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	2 cut(s)	8, 263
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 137
PfeI	GAWTC	2 cut(s)	128, 386
PkrI	GCNGC	2 cut(s)	114, 480
PleI	GAGTC	2 cut(s)	72, 253
PpsI	GAGTC	2 cut(s)	72, 253
PsiI	TTATAA	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	2 cut(s)	113, 479
Sau3AI	GATC	2 cut(s)	8, 263
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	73, 253
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	7 cut(s)	60, 137, 250, 318, 334, 357, 488
SfcI	CTRYAG	1 cut(s)	476
Sse9I	AATT	4 cut(s)	68, 102, 284, 423
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	31, 46
TaqI	TCGA	5 cut(s)	11, 20, 26, 131, 262
TasI	AATT	4 cut(s)	68, 102, 284, 423
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	128, 386
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	359, 364
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	423
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.