Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

67273046 .. 67274984

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020662

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGAGGCAGTCCAGGCATATACTCTGACACCATTGTTGACACACTTTCCAAGGATATTCAGCCCAGTTTATATGTGAAGATATGTCTTATCTGGAAAGGTGGTGGAGAGACTCGATCCTCTGATGACAAAAGAGAATTGTTCACCAATCTGGTAAAGAATGGTCAGCTAGAAATCGTTGGAGGTGGCTGGGTGATGAATGATGAGCTGATAGATGTTGGCTTTTTCGTGTTTAAGAGGCCATTTGCAGCAGAGCTGTCTGATTTTGGGTGTTTTATAATAATGGCTTGTGGTGTCATTCTTTTGCAGCAAACAGATATCAGCTTAATATATTACATGTTTCGTGGTCAAGGAACAATCAAATTGTATGTGGTGTACAATGTGTTGGAGACTGAAGATGAACCTGAGATGTGTGCAAGAAAATATATACTTTACAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

148

Amino Acids

16.74

Weight (kDa)

4.85

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 71	1e-05	Glycosyl hydrolases family 38 N-terminal domain
DUF747	PF05346	84 - 133	3.2e-13	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AclWI	GGATC	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	336
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	4 cut(s)	169, 208, 256, 324
AluI	AGCT	4 cut(s)	169, 208, 256, 324
Alw26I	GTCTC	2 cut(s)	104, 383
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	248, 307
AsuHPI	GGTGA	2 cut(s)	136, 205
BbvI	GCAGC	2 cut(s)	260, 319
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	104, 383
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	249, 308
BlsI	GCNGC	2 cut(s)	250, 309
Bme1390I	CCNGG	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	260, 319
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	241
BsmAI	GTCTC	2 cut(s)	104, 383
BsnI	GGCC	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	405
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	2 cut(s)	104, 383
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	260, 319
BsuRI	GGCC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	9 cut(s)	64, 169, 189, 208, 222, 241, 256, 287, 324
CviKI_1	RGCY	9 cut(s)	64, 169, 189, 208, 222, 241, 256, 287, 324
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	340
FatI	CATG	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	249, 308
Fsp4HI	GCNGC	2 cut(s)	249, 308
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	2 cut(s)	249, 308
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	340
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	112
HphI	GGTGA	2 cut(s)	136, 205
Hpy166II	GTNNAC	3 cut(s)	40, 144, 376
Hpy188I	TCNGA	3 cut(s)	28, 124, 262
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	3 cut(s)	40, 144, 376
HpyCH4V	TGCA	3 cut(s)	248, 307, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	27, 79, 79, 137, 175, 417
Lsp1109I	GCAGC	2 cut(s)	260, 319
MaeI	CTAG	1 cut(s)	170
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	2 cut(s)	91, 407
MluCI	AATT	2 cut(s)	137, 362
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	2 cut(s)	160, 366
MnlI	CCTC	3 cut(s)	130, 176, 231
MseI	TTAA	2 cut(s)	234, 326
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	340
NspI	RCATGY	1 cut(s)	340
PciI	ACATGT	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	250, 309
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PscI	ACATGT	1 cut(s)	336
PsiI	TTATAA	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	234, 326
SatI	GCNGC	2 cut(s)	249, 308
Sau3AI	GATC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	7 cut(s)	103, 171, 187, 210, 258, 326, 406
Sse9I	AATT	2 cut(s)	137, 362
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	51
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	137, 362
TatI	WGTACW	1 cut(s)	375
Tru1I	TTAA	2 cut(s)	234, 326
Tru9I	TTAA	2 cut(s)	234, 326
TseI	GCWGC	2 cut(s)	248, 307
TspDTI	ATGAA	2 cut(s)	212, 414
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.