Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

47885455 .. 47886933

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG359500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGAGGCAGTCCAGGCATATACTCTGACACCATTGTTGACACACTTTCCAAGGATATTCAGCCCAGTTTATATGGGAAGATATGTCTTATCTGGAAAGGTGGTGGAGAGACTCGATCCTCTGATGACAAAAGAGAATTGTTCACCAATCTGGTAAAGAATGGTCAGCTAGAAATCGTTGGAGGTGGCTGGGTGATGAATGATGAGCTGATAGATGTTGGCTTTTTCGTGTGTTTTGATTCGTTTGTCTTGCTGTTGACTATCATGCCAACAAGAATTTTGATTACCTTATGGAGGCTTGTGCATACAAGGCAGTTAAAAGGCCATCTGCAGCAGAGTTGTCTGATTTTGGGTGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

120

Amino Acids

13.45

Weight (kDa)

6.71

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 71	7.5e-06	Glycosyl hydrolases family 38 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	361
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	169, 208
AluI	AGCT	2 cut(s)	169, 208
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	136, 205
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	343
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	333
BspPI	GGATC	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 310
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	324
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	7 cut(s)	64, 169, 189, 208, 222, 298, 324
CviKI_1	RGCY	7 cut(s)	64, 169, 189, 208, 222, 298, 324
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	268
FaiI	YATR	9 cut(s)	20, 22, 73, 75, 85, 266, 292, 306, 361
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	332
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	2 cut(s)	40, 258
HindII	GTYRAC	2 cut(s)	40, 258
HinfI	GANTC	2 cut(s)	112, 239
HphI	GGTGA	2 cut(s)	136, 205
Hpy166II	GTNNAC	3 cut(s)	40, 144, 258
Hpy188I	TCNGA	3 cut(s)	28, 124, 345
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	3 cut(s)	40, 144, 258
HpyCH4V	TGCA	2 cut(s)	304, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 310
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	27, 79, 79, 137, 175
Lsp1109I	GCAGC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	170
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	2 cut(s)	137, 276
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	130, 176, 288
MseI	TTAA	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	15, 310
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	5 cut(s)	103, 171, 187, 210, 290
SfcI	CTRYAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	137, 276
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	51
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	137, 276
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseI	GCWGC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	276
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.