Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Forward (+)

29124373 .. 29125866

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTCAAAGCCCCAAATCCAGAATCAGACCCAGCAAGACCAACAACGATACCGTTTCGGGCTCCGCCGTGGGCATCACCACCAAGGAGCTTTATGACAAGATCGAGTTCTTCGACATCGACAGTGGGCCGTGGAACGGTGGAAGCAAAGCTGGAGAGTCAATTACAAAGGCGACACTCTGAGAAGTTGAAGGCAATTTTGGTGCCGCACTCGCATAACGATTCGAGGTGGACGAGTAATATGAGAGGCAGTCCAGGCATATACTTTGACACCATTTTTGACACACTTTCCAAGGATATTCAGCCCAGTTTATATGGGAAGAGATGTCTTATCTGGAAAGGTGGTGGAGAGACTCGATCCTCTGATGACAAAAGAGAATTGTTCACCAATCTGGTAAAGTATGGTCAGCTAGAAATCGTTGGAGGTGGCTGGGTGATGAATGATGAGCTTAGTATTGCCGAAGGAAGAGGACCCCAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

160

Amino Acids

17.79

Weight (kDa)

9.56

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	65 - 151	3.6e-08	Glycosyl hydrolases family 38 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	2 cut(s)	65, 206
AclWI	GGATC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	4 cut(s)	90, 151, 409, 448
AluI	AGCT	4 cut(s)	90, 151, 409, 448
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	2 cut(s)	127, 470
AsuHPI	GGTGA	3 cut(s)	69, 376, 445
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	52, 114
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	127, 470
BmiI	GGNNCC	3 cut(s)	63, 204, 472
BmrFI	CCNGG	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	68, 83, 130, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	4 cut(s)	68, 83, 130, 291
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	306
BseYI	CCCAGC	2 cut(s)	31, 429
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	101, 356
BspACI	CCGC	2 cut(s)	65, 206
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	63, 204, 472
BspPI	GGATC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	4 cut(s)	68, 83, 130, 291
BssMI	GATC	2 cut(s)	101, 356
BssT1I	CCWWGG	2 cut(s)	83, 291
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	54, 124, 139
Bst6I	CTCTTC	2 cut(s)	314, 460
BstDEI	CTNAG	2 cut(s)	180, 449
BstDSI	CCRYGG	2 cut(s)	68, 130
BstKTI	GATC	2 cut(s)	104, 359
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	101, 356
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 255
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	2 cut(s)	68, 130
BtsIMutI	CAGTG	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	127, 470
CviJI	RGCY	9 cut(s)	11, 62, 90, 129, 151, 304, 409, 429, 448
CviKI_1	RGCY	9 cut(s)	11, 62, 90, 129, 151, 304, 409, 429, 448
DdeI	CTNAG	2 cut(s)	180, 449
DpnI	GATC	2 cut(s)	103, 358
DpnII	GATC	2 cut(s)	101, 356
Eam1104I	CTCTTC	2 cut(s)	314, 460
EarI	CTCTTC	2 cut(s)	314, 460
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	83, 291
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	83, 291
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	83, 291
FaiI	YATR	8 cut(s)	95, 216, 242, 260, 262, 313, 315, 402
Fnu4HI	GCNGC	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	1 cut(s)	206
GsaI	CCCAGC	2 cut(s)	35, 433
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	129
HinfI	GANTC	4 cut(s)	23, 157, 221, 352
HphI	GGTGA	3 cut(s)	69, 376, 445
Hpy166II	GTNNAC	2 cut(s)	231, 384
Hpy188I	TCNGA	3 cut(s)	28, 181, 364
Hpy188III	TCNNGA	2 cut(s)	20, 334
Hpy8I	GTNNAC	2 cut(s)	231, 384
HpyAV	CCTTC	2 cut(s)	184, 455
HpyCH4III	ACNGT	3 cut(s)	54, 124, 139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 255
HpyF3I	CTNAG	2 cut(s)	180, 449
Kzo9I	GATC	2 cut(s)	101, 356
LmnI	GCTCC	2 cut(s)	67, 87
LpnPI	CCDG	9 cut(s)	33, 45, 137, 240, 267, 319, 319, 377, 415
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	410
MalI	GATC	2 cut(s)	103, 358
MboI	GATC	2 cut(s)	101, 356
MboII	GAAGA	3 cut(s)	102, 331, 477
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	3 cut(s)	161, 195, 377
MlyI	GAGTC	2 cut(s)	166, 346
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	5 cut(s)	219, 239, 370, 416, 461
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	211, 255
NdeII	GATC	2 cut(s)	101, 356
NlaIV	GGNNCC	3 cut(s)	63, 204, 472
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 230
PfeI	GAWTC	2 cut(s)	23, 221
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	2 cut(s)	165, 346
PpsI	GAGTC	2 cut(s)	165, 346
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	253
PspFI	CCCAGC	2 cut(s)	31, 429
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	3 cut(s)	63, 204, 472
PspPI	GGNCC	2 cut(s)	127, 470
PspPPI	RGGWCCY	1 cut(s)	470
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	101, 356
Sau96I	GGNCC	2 cut(s)	127, 470
SchI	GAGTC	2 cut(s)	166, 346
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	7 cut(s)	92, 153, 230, 343, 411, 427, 450
SfaNI	GCATC	1 cut(s)	83
SinI	GGWCC	1 cut(s)	470
Sse9I	AATT	3 cut(s)	161, 195, 377
SsiI	CCGC	2 cut(s)	65, 206
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	2 cut(s)	83, 291
TaaI	ACNGT	3 cut(s)	54, 124, 139
TaqI	TCGA	5 cut(s)	104, 113, 119, 224, 355
TasI	AATT	3 cut(s)	161, 195, 377
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	23, 221
TscAI	CASTG	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	470
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.