Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

14747580 .. 14750941

Gene Structure 3362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGAGGCAGTCCAGGCATATACTCTGACACCATTGTTGACACACTTTCCAAGGATATTCAGCCCAGTTTATATGGGAAGGTATGTCTTATCTGGAAAGGTGGTGGAGAGACTCGATCCTCTGACGACAAAAGAGAATTGTTCACCAATCTGGTAAAGAATGGTCAGCTAGAAATCGTTGGAGGTGGCTGGGTGATGAATGATGAGCTGATAGATGCTTGTGCATACAAGGCAGTTAAGAGGCCATCTACAGGAGAGCTGTCTGATTTTGGGTGTTTTATAATAATGGCTTGTGGTGTCATTCTTTTGCAGCAAACAGATATCAGCTTAATATATTACATGTTTCGTGGTCAAGGAACAATCAAATTGTATGTGGTGTACAATGTGTTGGGGACTGAAGATGAACCTAAGATGTGTGGTTTTGGGGCTGTTTACTATGCCGAGCTGACAAGCAAGCTTCCAAACAGTGTTCATCAAGTTTCTGAAGATTACATTTGGGAAAACTCTATACTTATACAGGCCAGTGTTTACATCAGAGGAAGTGGAGCCATAACATCAACAACTAGAATTTGCCTGGTGGCTCCAAATGATCACAGAACACTAAGCCTAGACGCTTTACAGAAGAATGCACCAACTGTGAAAAACAGACTGCTGCCGTTAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

223

Amino Acids

24.49

Weight (kDa)

5.44

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	86 - 145	2.6e-12	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	2 cut(s)	417, 504
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	339
AjnI	CCWGG	2 cut(s)	13, 573
AluBI	AGCT	6 cut(s)	169, 208, 259, 327, 445, 457
AluI	AGCT	6 cut(s)	169, 208, 259, 327, 445, 457
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	2 cut(s)	242, 519
ApeKI	GCWGC	2 cut(s)	310, 652
ApoI	RAATTY	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	136, 205
BbvI	GCAGC	2 cut(s)	322, 639
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	2 cut(s)	15, 575
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	3 cut(s)	170, 564, 608
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	311, 653
BlsI	GCNGC	2 cut(s)	312, 654
Bme1390I	CCNGG	2 cut(s)	15, 575
BmiI	GGNNCC	2 cut(s)	547, 582
BmrFI	CCNGG	2 cut(s)	15, 575
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	66, 522
BseBI	CCWGG	2 cut(s)	15, 575
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	66, 522
BseXI	GCAGC	2 cut(s)	322, 639
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	2 cut(s)	244, 521
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	244, 521
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	116, 589
BspANI	GGCC	2 cut(s)	244, 521
BspLI	GGNNCC	2 cut(s)	547, 582
BspPI	GGATC	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	66, 522
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	116, 589
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	15, 575
Bst4CI	ACNGT	2 cut(s)	467, 637
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	2 cut(s)	408, 602
BstKTI	GATC	2 cut(s)	119, 592
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	116, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 230
BstNI	CCWGG	2 cut(s)	15, 575
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	13, 573
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	322, 639
BsuRI	GGCC	2 cut(s)	244, 521
BtsIMutI	CAGTG	2 cut(s)	472, 529
Cac8I	GCNNGC	1 cut(s)	455
CseI	GACGC	1 cut(s)	620
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	1 cut(s)	340
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	408, 602
DpnI	GATC	2 cut(s)	118, 591
DpnII	GATC	2 cut(s)	116, 589
Eco130I	CCWWGG	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	417, 504
EcoRII	CCWGG	2 cut(s)	13, 573
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	343
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	311, 653
Fsp4HI	GCNGC	2 cut(s)	311, 653
FspBI	CTAG	3 cut(s)	170, 564, 608
GluI	GCNGC	2 cut(s)	311, 653
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	244, 521
HgaI	GACGC	1 cut(s)	620
Hin1II	CATG	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	112
HphI	GGTGA	2 cut(s)	136, 205
Hpy166II	GTNNAC	5 cut(s)	40, 144, 379, 433, 529
Hpy188I	TCNGA	5 cut(s)	28, 124, 265, 484, 536
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	5 cut(s)	40, 144, 379, 433, 529
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	467, 637
HpyCH4V	TGCA	3 cut(s)	224, 310, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 230
HpyF3I	CTNAG	2 cut(s)	408, 602
Hsp92II	CATG	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	116, 589
LmnI	GCTCC	2 cut(s)	545, 586
Lsp1109I	GCAGC	2 cut(s)	322, 639
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	3 cut(s)	170, 564, 608
MalI	GATC	2 cut(s)	118, 591
MboI	GATC	2 cut(s)	116, 589
MboII	GAAGA	3 cut(s)	410, 497, 634
MluCI	AATT	3 cut(s)	137, 365, 567
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	130, 176, 234, 530
MseI	TTAA	2 cut(s)	237, 329
MspR9I	CCNGG	2 cut(s)	15, 575
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	2 cut(s)	15, 575
MwoI	GCNNNNNNNGC	2 cut(s)	15, 230
NdeII	GATC	2 cut(s)	116, 589
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	2 cut(s)	547, 582
NmeAIII	GCCGAG	1 cut(s)	466
NspI	RCATGY	1 cut(s)	343
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	312, 654
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PscI	ACATGT	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	13, 573
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	13, 573
PspN4I	GGNNCC	2 cut(s)	547, 582
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	237, 329
SatI	GCNGC	2 cut(s)	311, 653
Sau3AI	GATC	2 cut(s)	116, 589
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	15, 575
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	137, 365, 567
SspMI	CTAG	3 cut(s)	170, 564, 608
StyD4I	CCNGG	2 cut(s)	13, 573
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	467, 637
TaqI	TCGA	1 cut(s)	115
TasI	AATT	3 cut(s)	137, 365, 567
TatI	WGTACW	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	237, 329
Tru9I	TTAA	2 cut(s)	237, 329
TscAI	CASTG	2 cut(s)	472, 529
TseI	GCWGC	2 cut(s)	310, 652
TspDTI	ATGAA	3 cut(s)	212, 417, 461
TspRI	CASTG	2 cut(s)	472, 529
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	343
XspI	CTAG	3 cut(s)	170, 564, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.