Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

51021885 .. 51023490

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGGTTCCAAGAGGCCCTAGATAGTTGGAATGGGTTGCTTCCATTTTCTACAAGAAATCCCACAAATGACACTGAAAGTTTTGCTTTCATTTTTGGATCAGATTCTGTGGAGAGGTTCCACATTTCTGCATTTATCATATTCATCCTAGCTCAAAACATTCTGGAGGAAACATTGGGAAACTGTTTTAACATTTGGGTACTGCAGAACGCTGGTGTGGTATTCGTCTGTGAAATGATTATCGATATCGTAAAGCACTTGTTCATTGCTAAGTTCAATGACATAAAGCCCTTTGCATACTCTGAGTTTCTTGAAGGACCTATGCAAGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

111

Amino Acids

12.67

Weight (kDa)

4.52

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	26 - 105	1.3e-19	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	106
AfaI	GTAC	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	277, 314
AluBI	AGCT	2 cut(s)	152, 332
AluI	AGCT	2 cut(s)	152, 332
AlwI	GGATC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	16, 317
AvaII	GGWCC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	20, 149
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	16, 317
BmiI	GGNNCC	2 cut(s)	8, 119
BpmI	CTGGAG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	243
BseGI	GGATG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	243
BsnI	GGCC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	8, 119
BspMAI	CTGCAG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	264
BssMI	GATC	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	270, 303, 333
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	16, 317
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	200
CviJI	RGCY	4 cut(s)	17, 152, 289, 332
CviKI_1	RGCY	4 cut(s)	17, 152, 289, 332
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	3 cut(s)	270, 303, 333
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	16, 317
EcoRV	GATATC	1 cut(s)	247
FaiI	YATR	4 cut(s)	140, 284, 298, 323
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	20, 149
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	103, 304
Hpy188III	TCNNGA	2 cut(s)	164, 311
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	4 cut(s)	131, 205, 296, 325
HpyF3I	CTNAG	3 cut(s)	270, 303, 333
Kzo9I	GATC	1 cut(s)	98
LpnPI	CCDG	2 cut(s)	149, 198
MaeI	CTAG	2 cut(s)	20, 149
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	3 cut(s)	7, 108, 160
MseI	TTAA	1 cut(s)	189
NdeII	GATC	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	8, 119
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	8, 119
PspPI	GGNCC	2 cut(s)	16, 317
PspPPI	RGGWCCY	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	2 cut(s)	16, 317
SetI	ASST	5 cut(s)	8, 119, 154, 322, 334
SfcI	CTRYAG	1 cut(s)	203
SgeI	CNNG	8 cut(s)	23, 32, 66, 161, 176, 225, 271, 323
SinI	GGWCC	1 cut(s)	317
SspMI	CTAG	2 cut(s)	20, 149
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	79, 133, 253
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	317
XspI	CTAG	2 cut(s)	20, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.