Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

74813299 .. 74815676

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG522900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGATAGCATGTTAGAGCTAGGCTTAGGGCAATTTTGTGTTTGTGTTAAGAGATGTGTGGTTCTTGTTTTTGGTTTTTCATTTGCTGAGGTTTTTTGTTTTGAATTTTTCTGCCTTTGTATGAGATTGAGTAGAGTGGGTTTGATTATTTATATGGGAAGAGATGTCTTATCTGGATTCTGGACAGGTGGTGGAGAGACTCGATCCTCTGATGACAAAAGAGAATTGTTTACCAATCTGGTAAAGAATGGTCAGCTAGAAATCGTTGGAGGTGGCTGGGTGATGAATGATGAGGAAATAAATGGATGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

4.68

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	68 - 100	6.7e-06	Glycosyl hydrolases family 38 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	2 cut(s)	19, 256
AluI	AGCT	2 cut(s)	19, 256
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	292
BbvCI	CCTCAGC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	20, 257
Bpu10I	CCTNAGC	2 cut(s)	25, 87
BseGI	GGATG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	78
BseYI	CCCAGC	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	198
BssMI	GATC	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	25, 87
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	311
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	4 cut(s)	19, 24, 256, 276
CviKI_1	RGCY	4 cut(s)	19, 24, 256, 276
DdeI	CTNAG	2 cut(s)	25, 87
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	13
FaiI	YATR	4 cut(s)	11, 122, 153, 155
FatI	CATG	1 cut(s)	9
FspBI	CTAG	2 cut(s)	20, 257
GsaI	CCCAGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	2 cut(s)	177, 199
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	211, 314
Hpy188III	TCNNGA	2 cut(s)	174, 181
Hpy8I	GTNNAC	1 cut(s)	231
HpyF3I	CTNAG	2 cut(s)	25, 87
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	203
LpnPI	CCDG	5 cut(s)	159, 166, 171, 224, 262
MaeI	CTAG	2 cut(s)	20, 257
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	171
MluCI	AATT	3 cut(s)	32, 104, 224
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	82, 217, 263, 286
MseI	TTAA	1 cut(s)	48
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	13
NspI	RCATGY	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	193
SetI	ASST	5 cut(s)	21, 93, 190, 258, 274
Sse9I	AATT	3 cut(s)	32, 104, 224
SspMI	CTAG	2 cut(s)	20, 257
TaqI	TCGA	1 cut(s)	202
TasI	AATT	3 cut(s)	32, 104, 224
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	69, 299
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	13
XspI	CTAG	2 cut(s)	20, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.