pycom13g01520

Protein POLLEN DEFECTIVE IN GUIDANCE

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
1007586 .. 1008840
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01520.2

Sequence Viewer

Length: 447 bp
ATGCTTATAGATGTTGGCTTTTTCGTGTGTTTTGATTCGTTTCTGTCACTGTTGACTATCATGCCAACAAGAATTTTGATGACTGTTTGGAGGACTATACAGTCAAGGTTAGATTTTCTCTTCACTTGCCCCTTCTGGTGTAGTATATTTGATAAACTATGCCAAAGTTTTAACCCAGATGTATTGCAAACTCTATTTAACTCAGCAGATGGACTTGCAAGCTGTCCACCAGAAAACATGAGATTCTGGGTTTGGAGATTCATTTGCGACCAAGCTTTAGCTGTGGCTGCCACAAATATCCTTTGGAAAGATCATTTTCTTCATAGATTTTTTACCCCACTTTTCATGCATAACCTACAGAGTTCCTTAACCGTATGTACTTATTCATGCATTTATCTTATTAGCTCAGGCGATTACTTTGTCAACCTGCATAGTTGCTCACAATAA

Protein Analysis

149

Amino Acids

17.26

Weight (kDa)

5.99

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 435
AcsI RAATTY 1 cut(s) 72
AfaI GTAC 1 cut(s) 379
AluBI AGCT 4 cut(s) 222, 275, 281, 405
AluI AGCT 4 cut(s) 222, 275, 281, 405
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 72
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 435
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 406
BseMII CTCAG 2 cut(s) 216, 420
BseXI GCAGC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 310
BspCNI CTCAG 2 cut(s) 215, 419
BspMI ACCTGC 1 cut(s) 435
BssMI GATC 1 cut(s) 310
Bst4CI ACNGT 4 cut(s) 51, 85, 102, 373
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 202, 406
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 47
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 378
CviAII CATG 4 cut(s) 61, 238, 346, 387
CviJI RGCY 6 cut(s) 18, 222, 275, 281, 287, 405
CviKI_1 RGCY 6 cut(s) 18, 222, 275, 281, 287, 405
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 202, 406
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DrdI GACNNNNNNGTC 1 cut(s) 100
DseDI GACNNNNNNGTC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EcoT22I ATGCAT 2 cut(s) 351, 392
FaeI CATG 4 cut(s) 64, 241, 349, 390
FatI CATG 4 cut(s) 60, 237, 345, 386
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
Hin1II CATG 4 cut(s) 64, 241, 349, 390
HincII GTYRAC 2 cut(s) 54, 424
HindII GTYRAC 2 cut(s) 54, 424
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 3 cut(s) 35, 243, 258
Hpy166II GTNNAC 3 cut(s) 54, 227, 424
Hpy8I GTNNAC 3 cut(s) 54, 227, 424
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 4 cut(s) 51, 85, 102, 373
HpyCH4V TGCA 5 cut(s) 187, 218, 349, 390, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 202, 406
Hsp92II CATG 4 cut(s) 64, 241, 349, 390
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 6 cut(s) 121, 189, 232, 243, 393, 440
Lsp1109I GCAGC 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 45
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 2 cut(s) 112, 311
MluCI AATT 1 cut(s) 72
MnlI CCTC 1 cut(s) 84
Mph1103I ATGCAT 2 cut(s) 351, 392
MseI TTAA 3 cut(s) 171, 198, 368
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 1 cut(s) 310
NlaIII CATG 4 cut(s) 64, 241, 349, 390
NmuCI GTSAC 1 cut(s) 45
NsiI ATGCAT 2 cut(s) 351, 392
PfeI GAWTC 3 cut(s) 35, 243, 258
PkrI GCNGC 1 cut(s) 289
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SaqAI TTAA 3 cut(s) 171, 198, 368
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 310
SetI ASST 7 cut(s) 110, 224, 277, 283, 357, 407, 429
SfcI CTRYAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 72
TaaI ACNGT 4 cut(s) 51, 85, 102, 373
TasI AATT 1 cut(s) 72
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 3 cut(s) 35, 243, 258
Tru1I TTAA 3 cut(s) 171, 198, 368
Tru9I TTAA 3 cut(s) 171, 198, 368
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 4 cut(s) 250, 311, 334, 375
TspRI CASTG 1 cut(s) 54
XapI RAATTY 1 cut(s) 72
Zsp2I ATGCAT 2 cut(s) 351, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.