Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Forward (+)

1144604 .. 1145615

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1017700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATTATTGATATCGTAAAGCACTCATTCATTGCTAAGTTCAATGACATTAAGCCTATTGCTTACTCGGAGTTTCTTGAAGACCTATGCAAGCAGACTTTAAATATACAATCAGAGGGTTCAAAGAAAAATCTTACGTTCATTCCTCTGGCACCAGCTTGTGTGGTCATCCGAGTGCTTACTCCCGTATATGCTGCTCACCTTCCTTACAGTCCCCTTCCGTGGAAACTATTTTGGACTCTCGTCCTTTTCGCGATGACGTATGTGATGCTGACAAGCCTGAAGGTGTTGATAGGCATGGGCCTCCAGAAACATGCCAGTTGGTACGTCAATAGGTGCAAAAGGAGGAAACACCATCTTCATTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

124

Amino Acids

14.29

Weight (kDa)

9.57

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	1 - 110	2.1e-25	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccII	CGCG	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	3 cut(s)	43, 80, 123
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	363
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	153
BmsI	GCATC	1 cut(s)	258
BoxI	GACNNNNGTC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	303
Bsp68I	TCGCGA	1 cut(s)	254
BspANI	GGCC	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	242
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	168
BtuMI	TCGCGA	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	298, 314
CviJI	RGCY	4 cut(s)	55, 158, 279, 303
CviKI_1	RGCY	4 cut(s)	55, 158, 279, 303
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	36
DraI	TTTAAA	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	302
EcoRV	GATATC	1 cut(s)	13
FaeI	CATG	2 cut(s)	301, 317
FaiI	YATR	8 cut(s)	88, 107, 190, 192, 264, 299, 315, 366
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	297, 313
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	301, 317
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	3 cut(s)	70, 115, 173
Hpy188III	TCNNGA	3 cut(s)	77, 253, 307
HpyAV	CCTTC	3 cut(s)	212, 227, 277
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	3 cut(s)	137, 260, 327
HpyCH4V	TGCA	2 cut(s)	90, 339
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	3 cut(s)	137, 260, 327
Hsp92II	CATG	2 cut(s)	301, 317
LpnPI	CCDG	5 cut(s)	134, 168, 293, 320, 331
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	258
MaeII	ACGT	3 cut(s)	137, 260, 327
MboII	GAAGA	2 cut(s)	92, 350
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	109, 156, 314, 339
MseI	TTAA	2 cut(s)	51, 101
MslI	CAYNNNNRTG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	254
NlaIII	CATG	2 cut(s)	301, 317
NlaIV	GGNNCC	1 cut(s)	153
NruI	TCGCGA	1 cut(s)	254
NspI	RCATGY	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PshAI	GACNNNNGTC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	301
RruI	TCGCGA	1 cut(s)	254
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	51, 101
SatI	GCNGC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	232
SetI	ASST	8 cut(s)	87, 140, 160, 204, 263, 288, 330, 338
SfaNI	GCATC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	3 cut(s)	140, 263, 330
Tru1I	TTAA	2 cut(s)	51, 101
Tru9I	TTAA	2 cut(s)	51, 101
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	19, 130, 350
TspGWI	ACGGA	1 cut(s)	210
XceI	RCATGY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.