Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Forward (+)

4842772 .. 4846057

Gene Structure 3286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGTTGGCTTAGTTTGCGAACTAGAAGTGGAGATTACTTGTATCTTGGAATAGTGATTGTGGTGGCAATTACTTTGTCAAACTGCATTGTTGCTCACAATAATGACTTGTTCGCTTTGCTGGTGTCCTATAATTTTGCCGAGATAAAAAGCAATGTGTTCAAGCGATATAGTAAGGAAAACATTCATAGCCTGAACGCTGGTGTGGTATTCGTCTGTGAAATGATCATCGATATCGTAAAGCACTCGTTCATTGCTAAGTTCAATGACATAAAGCCCTTTGCATACTCTGAGTTTCTTGAAGGACCTATGCAAGCAGAGTGGGATTGGAGATTTGAAAGGTGGAAGTGCGGGACGAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

121

Amino Acids

14.06

Weight (kDa)

7.73

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	18 - 65	1.3e-12	Eukaryotic membrane protein family
DUF747	PF05346	69 - 101	3.3e-10	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	351
AgsI	TTSAA	4 cut(s)	163, 265, 302, 338
Asp700I	GAANNNNTTC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	225
BfaI	CTAG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	160, 252
BseCI	ATCGAT	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	160, 252
BseMII	CTCAG	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	283
BspDI	ATCGAT	1 cut(s)	231
BsrDI	GCAATG	2 cut(s)	160, 252
BssMI	GATC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	3 cut(s)	11, 258, 291
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	231
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviJI	RGCY	3 cut(s)	10, 192, 277
CviKI_1	RGCY	3 cut(s)	10, 192, 277
DdeI	CTNAG	3 cut(s)	11, 258, 291
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	235
FaiI	YATR	6 cut(s)	132, 171, 189, 272, 286, 311
FauI	CCCGC	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	225
FspBI	CTAG	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	87, 284, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	3 cut(s)	11, 258, 291
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	3 cut(s)	107, 186, 206
MaeI	CTAG	1 cut(s)	24
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MluCI	AATT	2 cut(s)	69, 133
MroXI	GAANNNNTTC	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	305
PspPPI	RGGWCCY	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	305
SetI	ASST	3 cut(s)	310, 344, 365
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	69, 133
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	69, 133
TspDTI	ATGAA	2 cut(s)	176, 241
VpaK11BI	GGWCC	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.