Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Forward (+)

24212024 .. 24215683

Gene Structure 3660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017993

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCCAAAAACACACCAGTTGCTATCGAAGCAAAAGCCTATCCTCCAGCAATTGCAGTGGCTTCCTCCGCCACCGCTGAGTATTGGGTATGGAGAACCTGGTCTCACTGGTCAACAAAATCCAAAGAGCTTGCACAGCTCTGGGTGACCACGGTGAAGCTGACTCTTTACGACTCGCTTCCCTCTATCGCTGTCGGTGGCCAGGAAAAGGACCAAGGCCCAAATATGCAATTATCGGATTTAACACTTCTCGGTTTCTATAGGACAGATGAAGGATTGTCTTTGTTCTTTCAGGCAGTTAAGAGGCCATCTGCAGCAGAGCTGTCTGATTTTGGGTGTTTTACGATAATGGCTTGTGGTGTCATTCTTTTGCAGCAAACAGATTCTTTGCACTTGGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

135

Amino Acids

14.76

Weight (kDa)

5.27

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 75
AcoI	YGGCCR	2 cut(s)	3, 199
AdeI	CACNNNGTG	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	98, 201
AluBI	AGCT	4 cut(s)	130, 139, 160, 322
AluI	AGCT	4 cut(s)	130, 139, 160, 322
Alw26I	GTCTC	1 cut(s)	108
AoxI	GGCC	4 cut(s)	3, 199, 217, 305
ApeKI	GCWGC	2 cut(s)	314, 373
AspS9I	GGNCC	2 cut(s)	211, 218
AsuHPI	GGTGA	2 cut(s)	157, 166
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	2 cut(s)	5, 201
BbvI	GCAGC	2 cut(s)	326, 385
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	100, 203
BcoDI	GTCTC	1 cut(s)	108
BfmI	CTRYAG	2 cut(s)	259, 312
BisI	GCNGC	2 cut(s)	315, 374
BlsI	GCNGC	2 cut(s)	316, 375
Bme1390I	CCNGG	2 cut(s)	100, 203
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	211, 218
BmrFI	CCNGG	2 cut(s)	100, 203
BpmI	CTGGAG	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	150, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	17, 113
BseBI	CCWGG	2 cut(s)	100, 203
BseDI	CCNNGG	2 cut(s)	150, 214
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	17, 113
BseXI	GCAGC	2 cut(s)	326, 385
BshFI	GGCC	4 cut(s)	5, 201, 219, 307
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	4 cut(s)	5, 201, 219, 307
Bso31I	GGTCTC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	69, 75
BspANI	GGCC	4 cut(s)	5, 201, 219, 307
BspCNI	CTCAG	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	17, 113
BssECI	CCNNGG	2 cut(s)	150, 214
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	100, 203
Bst4CI	ACNGT	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 68, 136
BstNI	CCWGG	2 cut(s)	100, 203
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	98, 201
BstSFI	CTRYAG	2 cut(s)	259, 312
BstV1I	GCAGC	2 cut(s)	326, 385
BsuRI	GGCC	4 cut(s)	5, 201, 219, 307
BtgI	CCRYGG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 106
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	211, 218
CsiI	ACCWGGT	1 cut(s)	98
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
DdeI	CTNAG	1 cut(s)	78
DraIII	CACNNNGTG	1 cut(s)	397
EaeI	YGGCCR	2 cut(s)	3, 199
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	98, 201
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaiI	YATR	3 cut(s)	91, 227, 261
Fnu4HI	GCNGC	2 cut(s)	315, 374
Fsp4HI	GCNGC	2 cut(s)	315, 374
GluI	GCNGC	2 cut(s)	315, 374
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	4 cut(s)	5, 201, 219, 307
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	3 cut(s)	163, 173, 383
HphI	GGTGA	2 cut(s)	157, 166
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	238, 328
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	6 cut(s)	56, 134, 229, 314, 373, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 68, 136
HpyF3I	CTNAG	1 cut(s)	78
LpnPI	CCDG	9 cut(s)	30, 60, 85, 94, 112, 127, 188, 215, 278
Lsp1109I	GCAGC	2 cut(s)	326, 385
MabI	ACCWGGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	145
MfeI	CAATTG	1 cut(s)	51
MlsI	TGGCCA	2 cut(s)	5, 201
MluCI	AATT	2 cut(s)	51, 230
MluNI	TGGCCA	2 cut(s)	5, 201
MlyI	GAGTC	2 cut(s)	157, 167
MnlI	CCTC	4 cut(s)	54, 76, 193, 297
Mox20I	TGGCCA	2 cut(s)	5, 201
MscI	TGGCCA	2 cut(s)	5, 201
MseI	TTAA	2 cut(s)	242, 300
Msp20I	TGGCCA	2 cut(s)	5, 201
MspA1I	CMGCKG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	100, 203
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	2 cut(s)	100, 203
MwoI	GCNNNNNNNGC	3 cut(s)	29, 68, 136
NmuCI	GTSAC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	316, 375
PleI	GAGTC	2 cut(s)	157, 167
PpsI	GAGTC	2 cut(s)	157, 167
Psp6I	CCWGG	2 cut(s)	98, 201
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	98, 201
PspPI	GGNCC	2 cut(s)	211, 218
PstI	CTGCAG	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	242, 300
SatI	GCNGC	2 cut(s)	315, 374
Sau96I	GGNCC	2 cut(s)	211, 218
SchI	GAGTC	2 cut(s)	157, 167
ScrFI	CCNGG	2 cut(s)	100, 203
SetI	ASST	5 cut(s)	101, 132, 141, 162, 324
SexAI	ACCWGGT	1 cut(s)	98
SfcI	CTRYAG	2 cut(s)	259, 312
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	51, 230
SsiI	CCGC	2 cut(s)	69, 75
StyD4I	CCNGG	2 cut(s)	98, 201
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	51, 230
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	242, 300
Tru9I	TTAA	2 cut(s)	242, 300
TscAI	CASTG	2 cut(s)	63, 113
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	314, 373
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	63, 113
VpaK11BI	GGWCC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.