Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

26598246 .. 26615493

Gene Structure 17248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG250700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCAGCACAAACCAACCTTAACATCACCACAGACCGGTCTGCTCTTCTTGCTCTAAAAGACCATATCACCAGTGACCCTCAAAATATGATCCTCACCAATTGGTCAACCACCACCCCTATTTGCAACTGGGTTGGCGTCATTTGTGGTGCACGCCATCATCGAGTCGCAGCGTTGAACCTCTCTTACTTTGGTCTCGCGGGCACCATTCCTCCTGAGCTAGGCAACTTATCATTGCTTGTTGATATGGACATCCAAAATAACAGTTTCCAGGGTACCTTGCCTGACGAGTTGACTCGCCTGCGCCGGTTGAAGTTCATTAACTTGGGATACAACAAGTTTATGGGAGTGATACCGTCATGGTTTGGGTCCTTGTCCAAACTTCAAGGATTCATGTTGTTTGGTAATCAATTTGCAAGTTCTATACCAACTGCCATCTTCAACTTATCTGCTCTTCAAATATTTAATCTGAGTCATAACCAACTCTCAGAAATTCCAAATGAGATCGGCACCTTGAATCAGCTTGAAGAGTTGTTTGTGCAAAATAATGCCTTAAAAGGGCATATTCCTATGGTCGTCTTCAACATGTCATCTTTGACTAGAGTAAATTTCTATGGAAACAAGTTGAATGGTAGAATTCCCGACAATATATGTCAACATCTTCCAAATATCCAAGAGTTGAATTTGGGTAGCAATCAGTTTGATGGTCCACTTCCATCCAAGTTATGGCAATGCAAACAACTTCTTAAATTACATTTGGGGGATAACAAGTTCAGTGGAAGAATACCCAAAGATATTGGGAACTTAACTCGGATAAAGAAGATTGGGTTTTACACCAACAGCTTAACAGATGATCAGTTCAATCATAGGTATGCATTGCAAGCTAGCCTAGGATTTATGAGGTGTCAAGGTGTTGCAATTACTTTGTCAAGCTGCATTGTTGCTCACAATAATGACTTGTTCGCTTTGCTGGTGTCCTATAACTTTGCCGAGATAAAAAGCAATGTGTTCAAGCGATATAGTAAGGAAAACATTCATAGCCTGGTATACTTTGGTGAGTTTGCTTCCTTTTATTGGCTTATAGCGACTATGTTAATTAAACTAGATCGATGTGGTTCTGTGTCCGATGAATTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

379

Amino Acids

42.54

Weight (kDa)

8.77

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	11 - 49	5.6e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	139 - 202	4.7e-07	Leucine-rich repeat region
LRR_8	PF13855	141 - 185	3.9e-06	Leucine rich repeat
DUF747	PF05346	306 - 371	1.5e-12	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	3 cut(s)	203, 275, 509
AccB7I	CCANNNNNTGG	1 cut(s)	726
AccI	GTMKAC	1 cut(s)	1047
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	4 cut(s)	492, 607, 636, 682
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	5 cut(s)	36, 221, 558, 726, 1074
AflIII	ACRYGT	1 cut(s)	585
AgeI	ACCGGT	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	270, 1041
AloI	GAACNNNNNNTCC	2 cut(s)	755, 787
AluBI	AGCT	5 cut(s)	220, 523, 843, 884, 933
AluI	AGCT	5 cut(s)	220, 523, 843, 884, 933
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	200
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	85
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	5, 170, 933
ApoI	RAATTY	4 cut(s)	492, 607, 636, 682
AsiGI	ACCGGT	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	1032
Asp718I	GGTACC	1 cut(s)	275
AspA2I	CCTAGG	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	369, 707
AsuHPI	GGTGA	4 cut(s)	19, 61, 88, 1067
AsuNHI	GCTAGC	1 cut(s)	884
AvaII	GGWCC	2 cut(s)	369, 707
AvrII	CCTAGG	1 cut(s)	889
BaeGI	GKGCMC	2 cut(s)	154, 206
BanI	GGYRCC	3 cut(s)	203, 275, 509
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	3 cut(s)	17, 182, 920
BccI	CCATC	4 cut(s)	165, 443, 698, 724
BciT130I	CCWGG	2 cut(s)	272, 1043
BciVI	GTATCC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	853
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	5 cut(s)	221, 600, 885, 890, 1103
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	3 cut(s)	6, 171, 934
BlnI	CCTAGG	1 cut(s)	889
BlsI	GCNGC	3 cut(s)	7, 172, 935
Bme1390I	CCNGG	2 cut(s)	272, 1043
Bme18I	GGWCC	2 cut(s)	369, 707
BmgT120I	GGNCC	2 cut(s)	369, 707
BmiI	GGNNCC	4 cut(s)	205, 277, 370, 511
BmrFI	CCNGG	2 cut(s)	272, 1043
BmrI	ACTGGG	1 cut(s)	139
BmtI	GCTAGC	1 cut(s)	888
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	571
Bpu10I	CCTNAGC	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	1108
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	271, 889
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 221, 558, 726, 1074
Bse118I	RCCGGY	2 cut(s)	36, 306
Bse1I	ACTGG	2 cut(s)	72, 134
Bse3DI	GCAATG	4 cut(s)	233, 737, 875, 1009
BseBI	CCWGG	2 cut(s)	272, 1043
BseCI	ATCGAT	1 cut(s)	1108
BseDI	CCNNGG	2 cut(s)	271, 889
BseGI	GGATG	2 cut(s)	252, 716
BseLI	CCNNNNNNNGG	5 cut(s)	36, 221, 558, 726, 1074
BseMI	GCAATG	4 cut(s)	233, 737, 875, 1009
BseMII	CTCAG	3 cut(s)	207, 461, 501
BseNI	ACTGG	2 cut(s)	72, 134
BseSI	GKGCMC	2 cut(s)	154, 206
BseXI	GCAGC	3 cut(s)	17, 182, 920
Bsh1236I	CGCG	1 cut(s)	200
BshNI	GGYRCC	3 cut(s)	203, 275, 509
BshTI	ACCGGT	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	1108
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	37, 307
BslI	CCNNNNNNNGG	5 cut(s)	36, 221, 558, 726, 1074
BsmAI	GTCTC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	154, 206
Bsp143I	GATC	4 cut(s)	90, 504, 853, 1105
BspACI	CCGC	1 cut(s)	200
BspCNI	CTCAG	3 cut(s)	208, 462, 500
BspDI	ATCGAT	1 cut(s)	1108
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	4 cut(s)	205, 277, 370, 511
BspOI	GCTAGC	1 cut(s)	888
BspPI	GGATC	1 cut(s)	85
BspQI	GCTCTTC	2 cut(s)	51, 459
BspT107I	GGYRCC	3 cut(s)	203, 275, 509
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	4 cut(s)	233, 737, 875, 1009
BsrFI	RCCGGY	2 cut(s)	36, 306
BsrI	ACTGG	2 cut(s)	72, 134
BssAI	RCCGGY	2 cut(s)	36, 306
BssECI	CCNNGG	2 cut(s)	271, 889
BssMI	GATC	4 cut(s)	90, 504, 853, 1105
BssNAI	GTATAC	1 cut(s)	1048
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	889
Bst1107I	GTATAC	1 cut(s)	1048
Bst2UI	CCWGG	2 cut(s)	272, 1043
Bst4CI	ACNGT	2 cut(s)	266, 357
Bst6I	CTCTTC	3 cut(s)	51, 459, 522
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	5 cut(s)	154, 202, 302, 882, 886
BstDEI	CTNAG	3 cut(s)	216, 470, 487
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	252, 716
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	4 cut(s)	93, 507, 856, 1108
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	90, 504, 853, 1105
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 881
BstNI	CCWGG	2 cut(s)	272, 1043
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	270, 1041
BstSLI	GKGCMC	2 cut(s)	154, 206
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	17, 182, 920
BstV2I	GAAGAC	1 cut(s)	571
BstZ17I	GTATAC	1 cut(s)	1048
Bsu15I	ATCGAT	1 cut(s)	1108
BsuI	GTATCC	1 cut(s)	323
BsuTUI	ATCGAT	1 cut(s)	1108
BtsCI	GGATG	2 cut(s)	252, 716
BtsIMutI	CAGTG	2 cut(s)	79, 781
Cac8I	GCNNGC	5 cut(s)	154, 202, 302, 882, 886
CfoI	GCGC	1 cut(s)	306
Cfr10I	RCCGGY	2 cut(s)	36, 306
Cfr13I	GGNCC	2 cut(s)	369, 707
ClaI	ATCGAT	1 cut(s)	1108
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	276
CspAI	ACCGGT	1 cut(s)	36
CspCI	CAANNNNNGTGG	2 cut(s)	757, 792
CviAII	CATG	3 cut(s)	360, 394, 586
CviJI	RGCY	8 cut(s)	220, 523, 843, 884, 888, 933, 1041, 1078
CviKI_1	RGCY	8 cut(s)	220, 523, 843, 884, 888, 933, 1041, 1078
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	3 cut(s)	216, 470, 487
DpnI	GATC	4 cut(s)	92, 506, 855, 1107
DpnII	GATC	4 cut(s)	90, 504, 853, 1105
Eam1104I	CTCTTC	3 cut(s)	51, 459, 522
EarI	CTCTTC	3 cut(s)	51, 459, 522
Eco130I	CCWWGG	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	369, 707
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	636
EcoRII	CCWGG	2 cut(s)	270, 1041
EcoT14I	CCWWGG	1 cut(s)	889
EcoT22I	ATGCAT	1 cut(s)	877
ErhI	CCWWGG	1 cut(s)	889
FaeI	CATG	3 cut(s)	363, 397, 589
FatI	CATG	3 cut(s)	359, 393, 585
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	1047
Fnu4HI	GCNGC	3 cut(s)	6, 171, 934
FokI	GGATG	2 cut(s)	239, 703
Fsp4HI	GCNGC	3 cut(s)	6, 171, 934
FspBI	CTAG	5 cut(s)	221, 600, 885, 890, 1103
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	3 cut(s)	6, 171, 934
HapII	CCGG	2 cut(s)	37, 307
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	363, 397, 589
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	3 cut(s)	108, 294, 656
HindII	GTYRAC	3 cut(s)	108, 294, 656
HinfI	GANTC	5 cut(s)	165, 295, 390, 472, 517
HpaII	CCGG	2 cut(s)	37, 307
HphI	GGTGA	4 cut(s)	19, 61, 88, 1067
Hpy166II	GTNNAC	6 cut(s)	108, 152, 294, 656, 710, 1048
Hpy188I	TCNGA	4 cut(s)	471, 490, 813, 1126
Hpy188III	TCNNGA	2 cut(s)	215, 641
Hpy8I	GTNNAC	6 cut(s)	108, 152, 294, 656, 710, 1048
HpyCH4III	ACNGT	2 cut(s)	266, 357
HpyCH4V	TGCA	9 cut(s)	126, 152, 416, 541, 735, 875, 880, 917, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 881
HpyF3I	CTNAG	3 cut(s)	216, 470, 487
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	363, 397, 589
HspAI	GCGC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	4 cut(s)	90, 504, 853, 1105
LguI	GCTCTTC	2 cut(s)	51, 459
Lsp1109I	GCAGC	3 cut(s)	17, 182, 920
MaeI	CTAG	5 cut(s)	221, 600, 885, 890, 1103
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	4 cut(s)	92, 506, 855, 1107
MboI	GATC	4 cut(s)	90, 504, 853, 1105
MboII	GAAGA	8 cut(s)	38, 430, 446, 539, 571, 653, 792, 832
MfeI	CAATTG	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	154, 206
MlyI	GAGTC	3 cut(s)	174, 289, 481
MnlI	CCTC	5 cut(s)	90, 104, 191, 222, 894
Mph1103I	ATGCAT	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	1032
MslI	CAYNNNNRTG	2 cut(s)	870, 951
MspI	CCGG	2 cut(s)	37, 307
MspR9I	CCNGG	2 cut(s)	272, 1043
MunI	CAATTG	1 cut(s)	100
MvaI	CCWGG	2 cut(s)	272, 1043
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	50, 881
NdeII	GATC	4 cut(s)	90, 504, 853, 1105
NheI	GCTAGC	1 cut(s)	884
NlaIII	CATG	3 cut(s)	363, 397, 589
NlaIV	GGNNCC	4 cut(s)	205, 277, 370, 511
NmeAIII	GCCGAG	1 cut(s)	1015
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	1 cut(s)	589
PacI	TTAATTAA	1 cut(s)	1098
PciI	ACATGT	1 cut(s)	585
PciSI	GCTCTTC	2 cut(s)	51, 459
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	1032
PfeI	GAWTC	2 cut(s)	390, 517
PflMI	CCANNNNNTGG	1 cut(s)	726
PinAI	ACCGGT	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	7, 172, 935
PleI	GAGTC	3 cut(s)	173, 289, 480
PpsI	GAGTC	3 cut(s)	173, 289, 480
PpuMI	RGGWCCY	1 cut(s)	369
PscI	ACATGT	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	270, 1041
PspGI	CCWGG	2 cut(s)	270, 1041
PspN4I	GGNNCC	4 cut(s)	205, 277, 370, 511
PspPI	GGNCC	2 cut(s)	369, 707
PspPPI	RGGWCCY	1 cut(s)	369
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	2 cut(s)	870, 951
SapI	GCTCTTC	2 cut(s)	51, 459
SatI	GCNGC	3 cut(s)	6, 171, 934
Sau3AI	GATC	4 cut(s)	90, 504, 853, 1105
Sau96I	GGNCC	2 cut(s)	369, 707
SchI	GAGTC	3 cut(s)	174, 289, 481
ScrFI	CCNGG	2 cut(s)	272, 1043
SduI	GDGCHC	2 cut(s)	154, 206
SinI	GGWCC	2 cut(s)	369, 707
SmiMI	CAYNNNNRTG	2 cut(s)	870, 951
SsiI	CCGC	1 cut(s)	200
SspI	AATATT	1 cut(s)	462
SspMI	CTAG	5 cut(s)	221, 600, 885, 890, 1103
StyD4I	CCNGG	2 cut(s)	270, 1041
StyI	CCWWGG	1 cut(s)	889
TaaI	ACNGT	2 cut(s)	266, 357
TaqI	TCGA	2 cut(s)	163, 1108
TfiI	GAWTC	2 cut(s)	390, 517
TscAI	CASTG	2 cut(s)	79, 781
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	3 cut(s)	5, 170, 933
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	307, 382, 1025
TspRI	CASTG	2 cut(s)	79, 781
Van91I	CCANNNNNTGG	1 cut(s)	726
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	369, 707
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	4 cut(s)	492, 607, 636, 682
XceI	RCATGY	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XmaJI	CCTAGG	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	1047
XmnI	GAANNNNTTC	1 cut(s)	1032
XspI	CTAG	5 cut(s)	221, 600, 885, 890, 1103
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.