Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Forward (+)

51366493 .. 51367011

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0340800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGAGTTCAGTACGTCTAGCAAGTTTCGTATGTCTCATTCATGTTGTGTTTCTCTCCATTAGCCATTGCAGGGTTTTCCTGCCGAACGATCTCAGGCTTATTGAGCATACATGCAACAAAACACCACACCGCGATCTCTGTGTCTCTGCTCTTACCTCGGACCCTGAGAGTGCCGGTGCAGATGTCAAGGGCTTAGCCCGCATAATGGCTAATGTTATACTTAGGAAAGCCACAATTGATACCCAACACAAGATCGAGGGGATGATTGCGCATAACCCAGGAGACCAACGCTTAACCAAATGTAGAGATGATTACAAAGTAATCAAAACAAAAATTGACTCAACCAATGCATCTATTACTAAACATGATTATAAGTCGGCCGAGGAAAGCATGAATGATGCTATCGCTGAAGCTAATATATGCGAAGGTCGTTTTCCAGGCAGATCTCCTCTGATATATGAGAACAAACTTGAGGCTGATATTGCTGATTTAGCTGCTGACATAGTAATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

172

Amino Acids

19.05

Weight (kDa)

6.64

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	34 - 157	5.5e-17	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
Acc16I	TGCGCA	1 cut(s)	273
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	133, 202
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	73, 208
AjnI	CCWGG	2 cut(s)	280, 439
AluBI	AGCT	2 cut(s)	416, 497
AluI	AGCT	2 cut(s)	416, 497
Alw26I	GTCTC	3 cut(s)	41, 151, 279
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	484
BciT130I	CCWGG	2 cut(s)	282, 441
BcoDI	GTCTC	3 cut(s)	41, 151, 279
BfaI	CTAG	1 cut(s)	20
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	1 cut(s)	498
BlpI	GCTNAGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	2 cut(s)	282, 441
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	282, 441
BmsI	GCATC	2 cut(s)	362, 391
Bpu1102I	GCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	494
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	159, 280, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 208
Bse118I	RCCGGY	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	282, 441
BseDI	CCNNGG	3 cut(s)	159, 280, 384
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	73, 208
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	109, 159
BseRI	GAGGAG	1 cut(s)	441
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	484
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	73, 208
BsmAI	GTCTC	3 cut(s)	41, 151, 279
BsnI	GGCC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	91, 136, 255, 446
Bsp1720I	GCTNAGC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	133, 202
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	2 cut(s)	108, 160
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	159, 280, 384
BssMI	GATC	4 cut(s)	91, 136, 255, 446
Bst2UI	CCWGG	2 cut(s)	282, 441
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	95, 168, 196, 224
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	4 cut(s)	94, 139, 258, 449
BstMAI	GTCTC	3 cut(s)	41, 151, 279
BstMBI	GATC	4 cut(s)	91, 136, 255, 446
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 201, 485, 494
BstNI	CCWGG	2 cut(s)	282, 441
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	280, 439
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BstZI	CGGCCG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	4 cut(s)	44, 114, 368, 394
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	4 cut(s)	95, 168, 196, 224
DpnI	GATC	4 cut(s)	93, 138, 257, 448
DpnII	GATC	4 cut(s)	91, 136, 255, 446
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
EclXI	CGGCCG	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	280, 439
EcoT22I	ATGCAT	1 cut(s)	355
FaeI	CATG	4 cut(s)	47, 117, 371, 397
FatI	CATG	4 cut(s)	43, 113, 367, 393
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	1 cut(s)	20
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	4 cut(s)	47, 117, 371, 397
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	163, 456
HpyAV	CCTTC	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	72, 117, 182, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 201, 485, 494
HpyF3I	CTNAG	4 cut(s)	95, 168, 196, 224
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	4 cut(s)	47, 117, 371, 397
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	4 cut(s)	91, 136, 255, 446
LpnPI	CCDG	9 cut(s)	58, 82, 95, 180, 190, 267, 294, 426, 453
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	2 cut(s)	362, 391
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	16
MalI	GATC	4 cut(s)	93, 138, 257, 448
MboI	GATC	4 cut(s)	91, 136, 255, 446
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	446
MluCI	AATT	3 cut(s)	237, 336, 510
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	5 cut(s)	169, 253, 379, 462, 469
Mph1103I	ATGCAT	1 cut(s)	355
MseI	TTAA	1 cut(s)	296
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	282, 441
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	2 cut(s)	282, 441
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	106, 201, 485, 494
NdeII	GATC	4 cut(s)	91, 136, 255, 446
NlaIII	CATG	4 cut(s)	47, 117, 371, 397
NlaIV	GGNNCC	1 cut(s)	165
NmeAIII	GCCGAG	1 cut(s)	409
NsbI	TGCGCA	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	355
NspI	RCATGY	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	280, 439
PspGI	CCWGG	2 cut(s)	280, 439
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	4 cut(s)	91, 136, 255, 446
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	282, 441
SetI	ASST	5 cut(s)	19, 161, 418, 433, 499
SfaNI	GCATC	2 cut(s)	362, 391
SinI	GGWCC	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	237, 336, 510
SsiI	CCGC	2 cut(s)	133, 202
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	280, 439
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	237, 336, 510
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	17, 32, 410
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	117
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.