Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Reverse (-)

4667071 .. 4667432

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGTCGTATCTGGAAAGGTGGTGGAGAGACTCCTCGGATGACAAAAGAGAATTGTTCACCAATCTGGTAAAGAATGGTCAGCTAGAAATTGTTGGAGGTGGCTGGGTGATGAATGATGAGGCTAATTCACATTACTATGCCATAATTGAACAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

52

Amino Acids

6.16

Weight (kDa)

4.6

Isoelectric Point (pI)

66.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	1 - 52	1.2e-14	Glycosyl hydrolases family 38 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	49, 118
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	82, 102, 122
CviKI_1	RGCY	3 cut(s)	82, 102, 122
FaiI	YATR	3 cut(s)	138, 143, 157
FokI	GGATG	1 cut(s)	50
FspBI	CTAG	1 cut(s)	83
GsaI	CCCAGC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	29
HphI	GGTGA	2 cut(s)	49, 118
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	57
LpnPI	CCDG	3 cut(s)	50, 88, 137
MaeI	CTAG	1 cut(s)	83
MluCI	AATT	4 cut(s)	50, 87, 124, 144
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	43, 89, 112
MslI	CAYNNNNRTG	1 cut(s)	135
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	135
SchI	GAGTC	1 cut(s)	23
SetI	ASST	4 cut(s)	20, 84, 100, 156
SgeI	CNNG	5 cut(s)	23, 46, 77, 95, 115
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	4 cut(s)	50, 87, 124, 144
SspMI	CTAG	1 cut(s)	83
TasI	AATT	4 cut(s)	50, 87, 124, 144
TspDTI	ATGAA	1 cut(s)	125
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.