Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000972

Physical Location & Seq

Genomic Coordinates Forward (+)

1006767 .. 1007543

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGTTGAGATCCAACGGTCGAAATCTGTCCTTCGAGATTCTGAGCAGAAACAGTTCCCTCGACGACCAACATGATCACGCAATCTTCCACCGATCCAACTCAGATCCCGCTCAATCCGATCAATCCACCAACTCCAAGTTCGCCCGGAGAAAACGCAAGAAGAAGAAGAAGACACCGGCCACCGCCCACGCCTCCATACCCGAAAGCCCCACCGCCATCTACGGCGTTGTTTCCAACTCCTTCGATGTCATTTCCGAAACCACAAACAGAGAAACCGGCGATGTTCACGGCAACGGATTGGAATTCAATTACAGCGTCCAGACCGTGCTGTTGCCCGTCACAACGGAGGTCGTCGATCCCGAGTTCCAGGGTTTGCACGGGACCGCCGAGTTGAGGCAGAGGACTGTCATTGGGAGCGGCGGGGGAGTTGTGGAAGAGACTGAAACGGCGTCGTCTCGCATTGAAAGCCAGGCCAAGGAGGAGAGTGCGGCGGAGGGGGGTTCGGCGAGTAAGCAGAGGAGCGAGCTCAGTGGGAACGTGATCCCGAAATTGCAGACCGCTGAGTCATTGGATTGGAAGCGGCTCATGGCCGAAGATCCAAATCGTGAGGGTCCTTTTGCTTCTCTCGTGCAGTTTTTGTTTTCAATGGCTCAAATTTTGAATTTTTCTTCTTCTCTCAGATTTGTTTTCAGTGGACAAGTCGCCAGTGCAGTACTTCATGGAAGAGATGTCGAATGGCAATGCGTTGCGGAGCACAACCACCCTTGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

259

Amino Acids

28.33

Weight (kDa)

6.0

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67960
fragaria_vesca	FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240 FvH4_4g33240
malus_domestica	MD13G1017500.v1.1 MD13G1017700.v1.1 MD16G1015700.v1.1
prunus_persica	Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1 Prupe.1G335900_v2.0.a1
pyrus_communis	pycom13g01510 pycom13g01520 pycom16g01460
rosa_chinensis	RchiOBHm_Chr2g0114371 RchiOBHm_Chr4g0390701 RchiOBHm_Chr4g0442391 RchiOBHm_Chr5g0078431 RchiOBHm_Chr6g0287871
rosa_laevigata	RLG00000017993 RLG00000020662 RLG00000032414
rosa_multiflora	Rmu_sc0000346.1_g000015 Rmu_sc0006380.1_g000001 Rmu_sc0006478.1_g000002 Rmu_sc0036628.1_g000001 Rmu_ssc0000204.1_g000063
rosa_roxburghii	Rroxscaffold_2G00081610 Rroxscaffold_3G00248840 Rroxscaffold_5G00383240 Rroxscaffold_7G00183810
rosa_rugosa	Rorug04G0340800
rosa_samantha	Rh1AG155700 Rh1AG281100 Rh1CG145900 Rh2BG511100 Rh2BG570500 Rh2CG250700 Rh2DG255000 Rh2DG522900 Rh4AG033000 Rh4AG392400 Rh4BG026900 Rh4BG406100 Rh4CG421200 Rh4DG399200 Rh5AG369200 Rh5DG164900 Rh6BG139300 Rh6CG132300 Rh6DG122800 Rh7DG359500
rosa_wichuraiana	Rw2G010190 Rw4G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AccBSI	CCGCTC	2 cut(s)	113, 420
AclWI	GGATC	6 cut(s)	6, 90, 101, 353, 538, 593
AcoI	YGGCCR	2 cut(s)	180, 591
AcsI	RAATTY	3 cut(s)	305, 657, 664
AcyI	GRCGYC	1 cut(s)	452
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	2 cut(s)	396, 478
AgsI	TTSAA	4 cut(s)	310, 467, 648, 664
AjnI	CCWGG	2 cut(s)	369, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	1 cut(s)	529
AluI	AGCT	1 cut(s)	529
Alw21I	GWGCWC	2 cut(s)	531, 759
Alw26I	GTCTC	2 cut(s)	434, 462
AlwI	GGATC	6 cut(s)	6, 90, 101, 353, 538, 593
Ama87I	CYCGRG	1 cut(s)	362
AoxI	GGCC	3 cut(s)	180, 474, 591
ApoI	RAATTY	3 cut(s)	305, 657, 664
Asp700I	GAANNNNTTC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	384, 614
AsuC2I	CCSGG	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	362
AvaII	GGWCC	2 cut(s)	384, 614
BanII	GRGCYC	1 cut(s)	531
BauI	CACGAG	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	531, 759
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	3 cut(s)	241, 307, 465
BciT130I	CCWGG	2 cut(s)	371, 473
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	434, 462
BisI	GCNGC	3 cut(s)	421, 492, 584
BlsI	GCNGC	3 cut(s)	422, 493, 585
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	3 cut(s)	148, 371, 473
Bme18I	GGWCC	2 cut(s)	384, 614
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	2 cut(s)	384, 614
BmiI	GGNNCC	2 cut(s)	385, 615
BmrFI	CCNGG	3 cut(s)	148, 371, 473
BpiI	GAAGAC	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	603
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	370, 477, 767
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 478
Bse118I	RCCGGY	2 cut(s)	178, 278
Bse1I	ACTGG	1 cut(s)	708
Bse3DI	GCAATG	1 cut(s)	749
Bse8I	GATNNNNATC	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	371, 473
BseDI	CCNNGG	3 cut(s)	370, 477, 767
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	396, 478
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	5 cut(s)	35, 117, 544, 555, 694
BseNI	ACTGG	1 cut(s)	708
BseRI	GAGGAG	2 cut(s)	497, 535
BsgI	GTGCAG	2 cut(s)	653, 732
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	3 cut(s)	182, 476, 593
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	531, 759
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	3 cut(s)	148, 179, 279
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	396, 478
BsmAI	GTCTC	2 cut(s)	434, 462
BsmBI	CGTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	182, 476, 593
BsoBI	CYCGRG	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	531, 759
Bsp143I	GATC	8 cut(s)	11, 76, 95, 106, 121, 358, 543, 598
BspANI	GGCC	3 cut(s)	182, 476, 593
BspCNI	CTCAG	5 cut(s)	36, 116, 543, 556, 693
BspLI	GGNNCC	2 cut(s)	385, 615
BspPI	GGATC	6 cut(s)	6, 90, 101, 353, 538, 593
BsrBI	CCGCTC	2 cut(s)	113, 420
BsrDI	GCAATG	1 cut(s)	749
BsrFI	RCCGGY	2 cut(s)	178, 278
BsrI	ACTGG	1 cut(s)	708
BssAI	RCCGGY	2 cut(s)	178, 278
BssECI	CCNNGG	3 cut(s)	370, 477, 767
BssMI	GATC	8 cut(s)	11, 76, 95, 106, 121, 358, 543, 598
BssNI	GRCGYC	1 cut(s)	452
BssSI	CACGAG	1 cut(s)	629
BssT1I	CCWWGG	2 cut(s)	477, 767
Bst2BI	CACGAG	1 cut(s)	629
Bst2UI	CCWGG	2 cut(s)	371, 473
Bst4CI	ACNGT	4 cut(s)	20, 56, 328, 409
Bst6I	CTCTTC	2 cut(s)	432, 721
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	5 cut(s)	44, 103, 530, 564, 680
BstKTI	GATC	8 cut(s)	14, 79, 98, 109, 124, 361, 546, 601
BstMAI	GTCTC	2 cut(s)	434, 462
BstMBI	GATC	8 cut(s)	11, 76, 95, 106, 121, 358, 543, 598
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNI	CCWGG	2 cut(s)	371, 473
BstSCI	CCNGG	3 cut(s)	146, 369, 471
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	3 cut(s)	11, 106, 598
BstYI	RGATCY	3 cut(s)	11, 106, 598
BsuRI	GGCC	3 cut(s)	182, 476, 593
BtgZI	GCGATG	1 cut(s)	297
BtsIMutI	CAGTG	3 cut(s)	538, 700, 715
Cac8I	GCNNGC	1 cut(s)	527
Cfr10I	RCCGGY	2 cut(s)	178, 278
Cfr13I	GGNCC	2 cut(s)	384, 614
CseI	GACGC	2 cut(s)	307, 441
Csp6I	GTAC	1 cut(s)	716
CviAII	CATG	3 cut(s)	74, 589, 722
CviJI	RGCY	8 cut(s)	182, 210, 471, 476, 529, 586, 593, 653
CviKI_1	RGCY	8 cut(s)	182, 210, 471, 476, 529, 586, 593, 653
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	5 cut(s)	44, 103, 530, 564, 680
DpnI	GATC	8 cut(s)	13, 78, 97, 108, 123, 360, 545, 600
DpnII	GATC	8 cut(s)	11, 76, 95, 106, 121, 358, 543, 598
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	2 cut(s)	180, 591
Eam1104I	CTCTTC	2 cut(s)	432, 721
EarI	CTCTTC	2 cut(s)	432, 721
EciI	GGCGGA	1 cut(s)	509
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	2 cut(s)	477, 767
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	384, 614
Eco53kI	GAGCTC	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	369, 471
EcoT14I	CCWWGG	2 cut(s)	477, 767
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	2 cut(s)	477, 767
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	3 cut(s)	77, 592, 725
FaiI	YATR	4 cut(s)	75, 200, 590, 723
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	3 cut(s)	73, 588, 721
FauI	CCCGC	2 cut(s)	118, 416
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	421, 492, 584
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	3 cut(s)	421, 492, 584
GluI	GCNGC	3 cut(s)	421, 492, 584
HaeIII	GGCC	3 cut(s)	182, 476, 593
HapII	CCGG	3 cut(s)	148, 179, 279
HgaI	GACGC	2 cut(s)	307, 441
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	77, 592, 725
HinfI	GANTC	2 cut(s)	40, 566
HpaII	CCGG	3 cut(s)	148, 179, 279
Hpy166II	GTNNAC	2 cut(s)	289, 698
Hpy188I	TCNGA	5 cut(s)	45, 106, 121, 259, 683
Hpy188III	TCNNGA	5 cut(s)	37, 322, 362, 547, 608
Hpy8I	GTNNAC	2 cut(s)	289, 698
Hpy99I	CGWCG	3 cut(s)	68, 359, 457
HpyAV	CCTTC	2 cut(s)	43, 253
HpyCH4III	ACNGT	4 cut(s)	20, 56, 328, 409
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	4 cut(s)	379, 556, 634, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	5 cut(s)	44, 103, 530, 564, 680
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	3 cut(s)	77, 592, 725
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	8 cut(s)	11, 76, 95, 106, 121, 358, 543, 598
LmnI	GCTCC	3 cut(s)	417, 522, 754
LpnPI	CCDG	9 cut(s)	161, 192, 292, 335, 356, 383, 458, 485, 721
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	8 cut(s)	13, 78, 97, 108, 123, 360, 545, 600
MbiI	CCGCTC	2 cut(s)	113, 420
MboI	GATC	8 cut(s)	11, 76, 95, 106, 121, 358, 543, 598
MflI	RGATCY	3 cut(s)	11, 106, 598
MhlI	GDGCHC	2 cut(s)	531, 759
MluCI	AATT	5 cut(s)	305, 310, 551, 657, 664
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	3 cut(s)	39, 123, 261
MnlI	CCTC	9 cut(s)	71, 205, 343, 390, 396, 475, 490, 513, 604
MroXI	GAANNNNTTC	1 cut(s)	55
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	3 cut(s)	148, 179, 279
MspR9I	CCNGG	3 cut(s)	148, 371, 473
MvaI	CCWGG	2 cut(s)	371, 473
MwoI	GCNNNNNNNGC	1 cut(s)	468
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	8 cut(s)	11, 76, 95, 106, 121, 358, 543, 598
NlaIII	CATG	3 cut(s)	77, 592, 725
NlaIV	GGNNCC	2 cut(s)	385, 615
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 387
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	422, 493, 585
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PpuMI	RGGWCCY	1 cut(s)	614
Psp124BI	GAGCTC	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	369, 471
PspGI	CCWGG	2 cut(s)	369, 471
PspN4I	GGNNCC	2 cut(s)	385, 615
PspPI	GGNCC	2 cut(s)	384, 614
PspPPI	RGGWCCY	1 cut(s)	614
PsuI	RGATCY	3 cut(s)	11, 106, 598
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	531
SatI	GCNGC	3 cut(s)	421, 492, 584
Sau3AI	GATC	8 cut(s)	11, 76, 95, 106, 121, 358, 543, 598
Sau96I	GGNCC	2 cut(s)	384, 614
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	3 cut(s)	148, 371, 473
SduI	GDGCHC	2 cut(s)	531, 759
SetI	ASST	3 cut(s)	354, 531, 543
SinI	GGWCC	2 cut(s)	384, 614
Sse9I	AATT	5 cut(s)	305, 310, 551, 657, 664
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	3 cut(s)	146, 369, 471
StyI	CCWWGG	2 cut(s)	477, 767
TaaI	ACNGT	4 cut(s)	20, 56, 328, 409
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	6 cut(s)	22, 36, 63, 246, 357, 735
TasI	AATT	5 cut(s)	305, 310, 551, 657, 664
TatI	WGTACW	1 cut(s)	715
TauI	GCSGC	3 cut(s)	423, 494, 586
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	3 cut(s)	538, 700, 715
TseFI	GTSAC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	710
TspGWI	ACGGA	2 cut(s)	312, 362
TspRI	CASTG	3 cut(s)	538, 700, 715
VpaK11BI	GGWCC	2 cut(s)	384, 614
XapI	RAATTY	3 cut(s)	305, 657, 664
XmnI	GAANNNNTTC	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.