Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

1798477 .. 1800689

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G038400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGCAACAAGGGTCTACTTTGGTTGCCGAGTTATCGTCTAGATAGCCTGAAGAAGGTCATCAAAATTTCTGGCTGCGAAAGTTCAGTCTATTTATTCCAGAGTGGCGCCGAGTACAATCTTCCAAACCTCCACACAATTTTAGTTGAAAACTGTCAGAGGATGCAGGCGTTGATAGAGTCCAAAGGGCACAGTGACAATGTAGCCGACTTTAAGGTTCAACCTCGTTCGGAGAAGCTAAAGGTCATCCGTATCTCTGACTGTGAAAATTTGGTCTACTTATTCAAGACCAAGATGCTGCCATATACTTATTCAAGACCAAGATGCTGCCATACTTCCCAAAACTCGAAGAGATCTCCATCAGCCGGCGAAGCCAGAGCAAGCAAGTGGAAGAAGAGTCAAACTCAGAAGAGCCCGTCTCTGATGCTTCTCTTGCTATTCATGATCCAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

152

Amino Acids

17.23

Weight (kDa)

9.68

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccI	GTMKAC	2 cut(s)	16, 276
AclWI	GGATC	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	66, 268
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	55, 365
AgsI	TTSAA	4 cut(s)	149, 221, 286, 315
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	75, 298, 327
ApoI	RAATTY	2 cut(s)	66, 268
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	416
BbvI	GCAGC	3 cut(s)	62, 285, 314
BccI	CCATC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	111
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	3 cut(s)	76, 299, 328
BlsI	GCNGC	3 cut(s)	77, 300, 329
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	4 cut(s)	153, 285, 314, 414
BplI	GAGNNNNNCTC	4 cut(s)	388, 420, 403, 435
BsaBI	GATNNNNATC	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 365
Bse118I	RCCGGY	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	168, 246
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	55, 365
BseMII	CTCAG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	62, 285, 314
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	55, 365
BsmAI	GTCTC	1 cut(s)	423
BsmBI	CGTCTC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	192, 416
Bsp143I	GATC	2 cut(s)	353, 444
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	353, 444
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	3 cut(s)	155, 194, 263
Bst6I	CTCTTC	3 cut(s)	344, 389, 404
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	168, 367, 382
BstDEI	CTNAG	1 cut(s)	405
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	168, 246
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	356, 447
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	353, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 433
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	62, 285, 314
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	168, 246
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	3 cut(s)	168, 367, 382
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	442
CviJI	RGCY	7 cut(s)	48, 75, 206, 238, 365, 374, 414
CviKI_1	RGCY	7 cut(s)	48, 75, 206, 238, 365, 374, 414
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	405
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	2 cut(s)	355, 446
DpnII	GATC	2 cut(s)	353, 444
Eam1104I	CTCTTC	3 cut(s)	344, 389, 404
EarI	CTCTTC	3 cut(s)	344, 389, 404
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	416
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	1 cut(s)	445
FaiI	YATR	4 cut(s)	304, 306, 333, 443
FatI	CATG	1 cut(s)	441
FblI	GTMKAC	2 cut(s)	16, 276
Fnu4HI	GCNGC	3 cut(s)	76, 299, 328
FokI	GGATG	2 cut(s)	175, 233
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	3 cut(s)	76, 299, 328
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	76, 299, 328
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	179, 397
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	2 cut(s)	17, 277
Hpy188I	TCNGA	5 cut(s)	159, 232, 259, 408, 423
Hpy188III	TCNNGA	5 cut(s)	41, 100, 286, 315, 442
Hpy8I	GTNNAC	2 cut(s)	17, 277
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	3 cut(s)	155, 194, 263
HpyCH4V	TGCA	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 433
HpyF3I	CTNAG	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	353, 444
LguI	GCTCTTC	1 cut(s)	404
LpnPI	CCDG	6 cut(s)	57, 62, 113, 152, 379, 388
Lsp1109I	GCAGC	3 cut(s)	62, 285, 314
LweI	GCATC	4 cut(s)	153, 285, 314, 414
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	355, 446
MboI	GATC	2 cut(s)	353, 444
MboII	GAAGA	6 cut(s)	64, 113, 361, 403, 406, 421
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	192, 416
MluCI	AATT	3 cut(s)	66, 138, 268
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	188, 406
MnlI	CCTC	3 cut(s)	140, 153, 234
MroNI	GCCGGC	1 cut(s)	365
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	371, 433
NaeI	GCCGGC	1 cut(s)	367
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	2 cut(s)	353, 444
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	2 cut(s)	54, 136
NmuCI	GTSAC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	404
PdiI	GCCGGC	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	77, 300, 329
PleI	GAGTC	2 cut(s)	187, 405
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	2 cut(s)	187, 405
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	76, 299, 328
Sau3AI	GATC	2 cut(s)	353, 444
SchI	GAGTC	2 cut(s)	188, 406
SduI	GDGCHC	2 cut(s)	192, 416
SetI	ASST	7 cut(s)	60, 132, 219, 226, 240, 246, 454
SfaNI	GCATC	4 cut(s)	153, 285, 314, 414
SfoI	GGCGCC	1 cut(s)	109
Sse9I	AATT	3 cut(s)	66, 138, 268
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	155, 194, 263
TaqI	TCGA	1 cut(s)	347
TasI	AATT	3 cut(s)	66, 138, 268
TatI	WGTACW	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	75, 298, 327
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	430
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	199
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	2 cut(s)	66, 268
XbaI	TCTAGA	1 cut(s)	40
XmiI	GTMKAC	2 cut(s)	16, 276
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.