Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

4927537 .. 4928303

Gene Structure 767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAGCTTCCTTGGACATGTATGTTGATAAGCATCACTTTCCGCCCAGTTTCAAATTCTGTGTTGATGGTGCTTCTGCTAAAAACTTACCTGAAAATAGCATATATAGTTTTCAGGGGTAACTTCGTCGTGAATGGAGGAGACCCGGACTCACTCCCAGAACACATCTCTGAGCTGCATGTAATGAGCAATGGTGATCTACAATGCTTGCAAGTTAACTGCCACCTAAAGAACCTGAAGGTCATCAACATTCATGACTGCCGAAGTTTGGTCTATCTTTTCACTACAGACATGTTGGGCAACCTTCCAAACCTTGAAATGGTTTTTGTCGAAAAATGTCAAAAGATGGTGCGTTTGATAGAGCCAGAAGAATCTGACATGATTAAGCCTCATTTGAAGCTGAAGCACGTACATATCATTCATATGTCTGACTGTGAAAGTTTGGTCTACTTATTGAGGAGTGAGATGCTGCACTACTTCCCCGAGCTCATAGAGATCTCCATCAAACGATGCCAGAGGATGGAAGTGGCAAAGCCTTTGGAATTGCCCTACCCTAAAGATGCCGATGATAACTTATCTGCCTGCAGAACTGCTTCCAAGGTTAGTATGCCACAAATGATTTATACCATGTCCCTTTTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

215

Amino Acids

24.74

Weight (kDa)

6.49

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	71 - 114	5.6e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	2 cut(s)	257, 422
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	3 cut(s)	268, 319, 520
AflIII	ACRYGT	2 cut(s)	17, 291
AgsI	TTSAA	3 cut(s)	54, 317, 397
AluBI	AGCT	4 cut(s)	7, 175, 400, 487
AluI	AGCT	4 cut(s)	7, 175, 400, 487
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	482
ApeKI	GCWGC	3 cut(s)	4, 175, 469
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	592
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	16, 162, 456
BccI	CCATC	4 cut(s)	61, 340, 509, 514
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	135
BfmI	CTRYAG	2 cut(s)	285, 583
BglII	AGATCT	1 cut(s)	495
BisI	GCNGC	3 cut(s)	5, 176, 470
BlsI	GCNGC	3 cut(s)	6, 177, 471
Bme1390I	CCNGG	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	4 cut(s)	42, 456, 500, 550
BmuI	ACTGGG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	409
BsaBI	GATNNNNATC	2 cut(s)	32, 500
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	11, 597
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 319, 520
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	2 cut(s)	32, 500
BseDI	CCNNGG	2 cut(s)	11, 597
BseGI	GGATG	1 cut(s)	525
BseJI	GATNNNNATC	2 cut(s)	32, 500
BseLI	CCNNNNNNNGG	3 cut(s)	268, 319, 520
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	153, 472
BseXI	GCAGC	3 cut(s)	16, 162, 456
BsgI	GTGCAG	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	3 cut(s)	268, 319, 520
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	616
Bso31I	GGTCTC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	196, 495
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	11, 597
BssMI	GATC	2 cut(s)	196, 495
BssT1I	CCWWGG	2 cut(s)	11, 597
Bst4CI	ACNGT	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	209, 583
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	525
BstKTI	GATC	2 cut(s)	199, 498
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	196, 495
BstNSI	RCATGY	3 cut(s)	21, 182, 295
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	2 cut(s)	285, 583
BstV1I	GCAGC	3 cut(s)	16, 162, 456
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	209, 583
CciI	TCATGA	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	6 cut(s)	18, 179, 254, 292, 379, 628
CviJI	RGCY	7 cut(s)	7, 175, 364, 388, 400, 487, 535
CviKI_1	RGCY	7 cut(s)	7, 175, 364, 388, 400, 487, 535
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	198, 497
DpnII	GATC	2 cut(s)	196, 495
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	11, 597
Eco24I	GRGCYC	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	487
Eco57I	CTGAAG	2 cut(s)	257, 422
Eco88I	CYCGRG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	11, 597
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	2 cut(s)	11, 597
FaeI	CATG	6 cut(s)	21, 182, 257, 295, 382, 631
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	6 cut(s)	17, 178, 253, 291, 378, 627
FauNDI	CATATG	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	5, 176, 470
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	3 cut(s)	5, 176, 470
GluI	GCNGC	3 cut(s)	5, 176, 470
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	6 cut(s)	21, 182, 257, 295, 382, 631
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	149, 371
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	217, 448
Hpy188I	TCNGA	3 cut(s)	172, 376, 430
Hpy188III	TCNNGA	2 cut(s)	130, 254
Hpy8I	GTNNAC	2 cut(s)	217, 448
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	232, 314
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	5 cut(s)	4, 178, 211, 472, 585
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	21, 182, 257, 295, 382, 631
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	196, 495
LpnPI	CCDG	9 cut(s)	60, 100, 104, 159, 171, 248, 378, 527, 595
Lsp1109I	GCAGC	3 cut(s)	16, 162, 456
LweI	GCATC	4 cut(s)	42, 456, 500, 550
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	198, 497
MboI	GATC	2 cut(s)	196, 495
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	2 cut(s)	55, 542
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	131, 399, 450, 510
MroXI	GAANNNNTTC	1 cut(s)	592
MseI	TTAA	2 cut(s)	216, 384
MslI	CAYNNNNRTG	1 cut(s)	422
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	146
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	2 cut(s)	196, 495
NlaIII	CATG	6 cut(s)	21, 182, 257, 295, 382, 631
NspI	RCATGY	3 cut(s)	21, 182, 295
PagI	TCATGA	1 cut(s)	253
PciI	ACATGT	2 cut(s)	17, 291
PdmI	GAANNNNTTC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	6, 177, 471
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	409
PscI	ACATGT	2 cut(s)	17, 291
Psp124BI	GAGCTC	1 cut(s)	489
PstI	CTGCAG	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	495
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	216, 384
SatI	GCNGC	3 cut(s)	5, 176, 470
Sau3AI	GATC	2 cut(s)	196, 495
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	4 cut(s)	42, 456, 500, 550
SfcI	CTRYAG	2 cut(s)	285, 583
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	2 cut(s)	55, 542
SsiI	CCGC	1 cut(s)	43
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	11, 597
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	330
TasI	AATT	2 cut(s)	55, 542
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	216, 384
Tru9I	TTAA	2 cut(s)	216, 384
TseI	GCWGC	3 cut(s)	4, 175, 469
TspDTI	ATGAA	2 cut(s)	242, 410
Van91I	CCANNNNNTGG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	3 cut(s)	21, 182, 295
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.