Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

6037000 .. 6037482

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG079700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCAGAGAAATTACAAATTGATCTGAATAAAGCCACTGGGAGTAGAGCAGATACATTGGCAAGTGCATTGAAGGAGTTAAGATTTTTGATCATTTTGGATGATATGTGGAAGAAGCTGTCTCTTGAGCTAATTTGGATTCCAGTGCCAACAAGGGAAAATGGCTGCAAGGTTATAATAGTATCCAGATCACTTCCAGTGTTCAATGACATCAAAATTGACAAGAAGTTTGAGATCAAACCTCTTTCAGATACAGCGGCACGAGAATTGTTTGAGAGGGAAGCTGGCATTAGATTCTCAGACTTGAGGGATGATACTCGAACTATGGCAGAGAAGATGGTAGATGACTGTGATGGTTTGCCCTTGGCTATTGGCTTTCTGGCACAGACCTTGAAAGAATTAAAGATTGATGCTGACAGTGTTGATGCTGCATGGAATGCAGCCCTTTTGAAGTTACAGAGTTCTCACTTGGCTAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

160

Amino Acids

17.93

Weight (kDa)

5.53

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	8 - 95	2.6e-15	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AciI	CCGC	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	73, 205, 394, 451
AluBI	AGCT	3 cut(s)	118, 130, 284
AluI	AGCT	3 cut(s)	118, 130, 284
Alw26I	GTCTC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	165, 428, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	152, 415, 452
BccI	CCATC	2 cut(s)	331, 347
BciVI	GTATCC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	4 cut(s)	166, 258, 429, 441
BlsI	GCNGC	4 cut(s)	167, 259, 430, 442
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	400, 415
BmuI	ACTGGG	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	146, 325
BsaJI	CCNNGG	1 cut(s)	363
Bse1I	ACTGG	3 cut(s)	43, 143, 197
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	106, 316
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	43, 143, 197
BseXI	GCAGC	3 cut(s)	152, 415, 452
BsmAI	GTCTC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	442
Bsp143I	GATC	4 cut(s)	22, 90, 188, 234
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	43, 143, 197
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	4 cut(s)	22, 90, 188, 234
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	350, 419
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	106, 316
BstKTI	GATC	4 cut(s)	25, 93, 191, 237
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	4 cut(s)	22, 90, 188, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	152, 415, 452
BsuI	GTATCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	106, 316
BtsIMutI	CAGTG	4 cut(s)	36, 150, 204, 424
Cac8I	GCNNGC	1 cut(s)	286
CviAII	CATG	2 cut(s)	432, 480
CviJI	RGCY	9 cut(s)	35, 118, 130, 165, 284, 368, 375, 443, 473
CviKI_1	RGCY	9 cut(s)	35, 118, 130, 165, 284, 368, 375, 443, 473
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	4 cut(s)	24, 92, 190, 236
DpnII	GATC	4 cut(s)	22, 90, 188, 234
Eco130I	CCWWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	435, 483
FaiI	YATR	5 cut(s)	107, 176, 326, 433, 481
FatI	CATG	2 cut(s)	431, 479
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	166, 258, 429, 441
FokI	GGATG	2 cut(s)	113, 323
Fsp4HI	GCNGC	4 cut(s)	166, 258, 429, 441
GluI	GCNGC	4 cut(s)	166, 258, 429, 441
Hin1II	CATG	2 cut(s)	435, 483
HinfI	GANTC	2 cut(s)	139, 294
Hpy188I	TCNGA	3 cut(s)	27, 250, 301
Hpy188III	TCNNGA	2 cut(s)	125, 186
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	350, 419
HpyCH4V	TGCA	4 cut(s)	68, 168, 431, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	435, 483
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	22, 90, 188, 234
LpnPI	CCDG	6 cut(s)	24, 156, 199, 210, 270, 365
Lsp1109I	GCAGC	3 cut(s)	152, 415, 452
LweI	GCATC	2 cut(s)	400, 415
MaeIII	GTNAC	1 cut(s)	453
MalI	GATC	4 cut(s)	24, 92, 190, 236
MboI	GATC	4 cut(s)	22, 90, 188, 234
MboII	GAAGA	2 cut(s)	124, 346
MluCI	AATT	6 cut(s)	11, 18, 132, 216, 266, 398
MnlI	CCTC	3 cut(s)	252, 270, 300
MseI	TTAA	2 cut(s)	80, 401
MspA1I	CMGCKG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	4 cut(s)	22, 90, 188, 234
NlaIII	CATG	2 cut(s)	435, 483
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	139, 294
PkrI	GCNGC	4 cut(s)	167, 259, 430, 442
PsiI	TTATAA	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	80, 401
SatI	GCNGC	4 cut(s)	166, 258, 429, 441
Sau3AI	GATC	4 cut(s)	22, 90, 188, 234
SetI	ASST	6 cut(s)	120, 132, 174, 244, 286, 392
SfaNI	GCATC	2 cut(s)	400, 415
SmlI	CTYRAG	2 cut(s)	125, 304
SmoI	CTYRAG	2 cut(s)	125, 304
Sse9I	AATT	6 cut(s)	11, 18, 132, 216, 266, 398
SsiI	CCGC	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	350, 419
TaqI	TCGA	1 cut(s)	319
TasI	AATT	6 cut(s)	11, 18, 132, 216, 266, 398
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	139, 294
Tru1I	TTAA	2 cut(s)	80, 401
Tru9I	TTAA	2 cut(s)	80, 401
TscAI	CASTG	4 cut(s)	43, 150, 204, 424
TseI	GCWGC	3 cut(s)	165, 428, 440
TspRI	CASTG	4 cut(s)	43, 150, 204, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.