RLG00000031358

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002553
Physical Location & Seq
Reverse (-)
4378115 .. 4379698
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031358

Sequence Viewer

Length: 921 bp
ATGGCAGAAACAATTGCACTTGTTTCCAGCGTTTTTGGTTGCCTAACTGTAGCTGTAACTCTGGCAGCACCCTGTTTTTGTGTACCCCTTACGGATAAATATGATTTCTTGAGGAAACGAGAAAAAAAGCTTTGTGCTCTTTTACTTAAACTGAATGAGCTGGAACAGAAAAGGAGTAAGGTAGATCAGGAATCTAAGGAGAAGGTGGTGCGTAAGTTTGTGAGAAGTTCTGAGTGGTTGCAAGAGACAGAGAATATTATCAAGGAAGCTGCTGTATGGAAGTTTGAGGAGAGCAAGTCGAATATTGTATCGCAAGTTAATGATCTGATATTACATGAGGAAGATGTTGATGATAACACAGGAAATGGCCATTTTGATAAAGTTCTTTTTGTGACTGTAAAGAATGAGCTCGTATCAACTAAAGCATCCGTTGAGGATCTGCAGAAGCAGATTGCAGATAAATTACAAATTGATCTTCACAAGGAAAATGGAAGTAGTGCAGATGATGCATTGGCAAGTGCCTTGGCCAAGTTAAGATTTCTGATCATTTTGGATGATATGCAGACAGAACCGTCTCTTGAGGCAATCAGCATTCCAAGGCCAAGTGAAGAGAATCGCTGCAAGGTTATTATTGTATTCAGCTCACTTACAATGTGCAGCGACATCCACGTTGATGAAAAGTTTGAGATCAAACCTTTATCTGCTACAGAGGCACAAAAACTGTTTGAGAGTGAAGCTGGCATTAAATTGTCAAAGCTAGGGGATGATACTCAAGCCATTGCAAAGAAGATGATAGATGAATGTGATGGTTTTCCCATCACAATTATCTTGCTGGTACCAATGTACAACTTCATACCTGTTGATCTAGAAAGACTGAGCCCTCTCAGGCTCTCAGCTGCCAATTTGGGTTCTAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_4 LRR_8 NB-ARC

Protein Analysis

307

Amino Acids

34.25

Weight (kDa)

5.0

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 119 - 247 3.9e-16 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 571
Acc65I GGTACC 1 cut(s) 835
AccB1I GGYRCC 1 cut(s) 835
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 2 cut(s) 367, 525
AfaI GTAC 3 cut(s) 84, 837, 845
AluBI AGCT 9 cut(s) 53, 130, 160, 269, 409, 642, 737, 757, 896
AluI AGCT 9 cut(s) 53, 130, 160, 269, 409, 642, 737, 757, 896
Alw21I GWGCWC 2 cut(s) 139, 411
Alw26I GTCTC 2 cut(s) 239, 579
AlwI GGATC 1 cut(s) 444
AoxI GGCC 3 cut(s) 367, 525, 599
ApeKI GCWGC 5 cut(s) 65, 269, 618, 657, 896
Asp718I GGTACC 1 cut(s) 835
BaeI ACNNNNGTAYC 2 cut(s) 827, 860
BalI TGGCCA 2 cut(s) 369, 527
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 2 cut(s) 411, 881
Bbv12I GWGCWC 2 cut(s) 139, 411
BbvI GCAGC 5 cut(s) 77, 256, 605, 669, 883
BccI CCATC 2 cut(s) 800, 824
BclI TGATCA 1 cut(s) 543
BcoDI GTCTC 2 cut(s) 239, 579
BfaI CTAG 2 cut(s) 758, 866
BfmI CTRYAG 3 cut(s) 48, 440, 705
BisI GCNGC 5 cut(s) 66, 270, 619, 658, 897
BlsI GCNGC 5 cut(s) 67, 271, 620, 659, 898
BmiI GGNNCC 1 cut(s) 837
BmsI GCATC 2 cut(s) 434, 496
BpuEI CTTGAG 3 cut(s) 130, 599, 756
BsaJI CCNNGG 2 cut(s) 522, 596
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bse3DI GCAATG 1 cut(s) 777
BseDI CCNNGG 2 cut(s) 522, 596
BseGI GGATG 4 cut(s) 425, 559, 663, 769
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 4 cut(s) 222, 866, 898, 906
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 5 cut(s) 77, 256, 605, 669, 883
BsgI GTGCAG 2 cut(s) 519, 676
BshFI GGCC 3 cut(s) 369, 527, 601
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 2 cut(s) 139, 411
BsmAI GTCTC 2 cut(s) 239, 579
BsmBI CGTCTC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 3 cut(s) 369, 527, 601
Bsp1286I GDGCHC 3 cut(s) 139, 411, 881
Bsp1407I TGTACA 1 cut(s) 843
Bsp143I GATC 7 cut(s) 184, 322, 436, 472, 543, 687, 862
BspANI GGCC 3 cut(s) 369, 527, 601
BspCNI CTCAG 4 cut(s) 223, 867, 897, 905
BspLI GGNNCC 1 cut(s) 837
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 835
BsrDI GCAATG 1 cut(s) 777
BsrGI TGTACA 1 cut(s) 843
BssECI CCNNGG 2 cut(s) 522, 596
BssMI GATC 7 cut(s) 184, 322, 436, 472, 543, 687, 862
BssT1I CCWWGG 2 cut(s) 522, 596
Bst4CI ACNGT 4 cut(s) 49, 397, 573, 723
Bst6I CTCTTC 1 cut(s) 603
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 843
BstC8I GCNNGC 1 cut(s) 739
BstDEI CTNAG 5 cut(s) 195, 231, 875, 884, 892
BstF5I GGATG 4 cut(s) 425, 559, 663, 769
BstKTI GATC 7 cut(s) 187, 325, 439, 475, 546, 690, 865
BstMAI GTCTC 2 cut(s) 239, 579
BstMBI GATC 7 cut(s) 184, 322, 436, 472, 543, 687, 862
BstMWI GCNNNNNNNGC 2 cut(s) 506, 710
BstSFI CTRYAG 3 cut(s) 48, 440, 705
BstV1I GCAGC 5 cut(s) 77, 256, 605, 669, 883
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuRI GGCC 3 cut(s) 369, 527, 601
BtsCI GGATG 4 cut(s) 425, 559, 663, 769
Cac8I GCNNGC 1 cut(s) 739
Csp6I GTAC 3 cut(s) 83, 836, 844
CviAII CATG 1 cut(s) 335
CviQI GTAC 3 cut(s) 83, 836, 844
DdeI CTNAG 5 cut(s) 195, 231, 875, 884, 892
DpnI GATC 7 cut(s) 186, 324, 438, 474, 545, 689, 864
DpnII GATC 7 cut(s) 184, 322, 436, 472, 543, 687, 862
DrdI GACNNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 571
EaeI YGGCCR 2 cut(s) 367, 525
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 522, 596
Eco24I GRGCYC 2 cut(s) 411, 881
Eco53kI GAGCTC 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 522, 596
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 2 cut(s) 411, 881
ErhI CCWWGG 2 cut(s) 522, 596
Esp3I CGTCTC 1 cut(s) 579
FaeI CATG 1 cut(s) 338
FaiI YATR 5 cut(s) 102, 277, 336, 560, 854
FatI CATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 5 cut(s) 66, 270, 619, 658, 897
FokI GGATG 4 cut(s) 412, 566, 650, 776
FriOI GRGCYC 2 cut(s) 411, 881
Fsp4HI GCNGC 5 cut(s) 66, 270, 619, 658, 897
FspBI CTAG 2 cut(s) 758, 866
GluI GCNGC 5 cut(s) 66, 270, 619, 658, 897
HaeIII GGCC 3 cut(s) 369, 527, 601
Hin1II CATG 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 191, 613
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 3 cut(s) 232, 327, 543
Hpy188III TCNNGA 4 cut(s) 109, 188, 578, 866
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 4 cut(s) 49, 397, 573, 723
HpyCH4IV ACGT 1 cut(s) 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 710
HpyF3I CTNAG 5 cut(s) 195, 231, 875, 884, 892
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 1 cut(s) 338
KpnI GGTACC 1 cut(s) 839
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 7 cut(s) 184, 322, 436, 472, 543, 687, 862
Lsp1109I GCAGC 5 cut(s) 77, 256, 605, 669, 883
LweI GCATC 2 cut(s) 434, 496
MaeI CTAG 2 cut(s) 758, 866
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 2 cut(s) 55, 391
MalI GATC 7 cut(s) 186, 324, 438, 474, 545, 689, 864
MboI GATC 7 cut(s) 184, 322, 436, 472, 543, 687, 862
MboII GAAGA 4 cut(s) 353, 467, 620, 799
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 3 cut(s) 139, 411, 881
MlsI TGGCCA 2 cut(s) 369, 527
MluCI AATT 6 cut(s) 12, 461, 468, 746, 822, 901
MluNI TGGCCA 2 cut(s) 369, 527
MnlI CCTC 7 cut(s) 105, 280, 331, 427, 574, 703, 891
Mox20I TGGCCA 2 cut(s) 369, 527
Mph1103I ATGCAT 1 cut(s) 511
MscI TGGCCA 2 cut(s) 369, 527
MseI TTAA 4 cut(s) 147, 318, 533, 744
MslI CAYNNNNRTG 1 cut(s) 672
Msp20I TGGCCA 2 cut(s) 369, 527
MspA1I CMGCKG 1 cut(s) 896
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 506, 710
NdeII GATC 7 cut(s) 184, 322, 436, 472, 543, 687, 862
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 837
NmuCI GTSAC 1 cut(s) 391
NsiI ATGCAT 1 cut(s) 511
PctI GAATGC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 191, 613
PkrI GCNGC 5 cut(s) 67, 271, 620, 659, 898
Psp124BI GAGCTC 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 837
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 3 cut(s) 84, 837, 845
RsaNI GTAC 3 cut(s) 83, 836, 844
RseI CAYNNNNRTG 1 cut(s) 672
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 4 cut(s) 147, 318, 533, 744
SatI GCNGC 5 cut(s) 66, 270, 619, 658, 897
Sau3AI GATC 7 cut(s) 184, 322, 436, 472, 543, 687, 862
SduI GDGCHC 3 cut(s) 139, 411, 881
SfaNI GCATC 2 cut(s) 434, 496
SfcI CTRYAG 3 cut(s) 48, 440, 705
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 3 cut(s) 109, 578, 771
SmoI CTYRAG 3 cut(s) 109, 578, 771
Sse9I AATT 6 cut(s) 12, 461, 468, 746, 822, 901
SspI AATATT 2 cut(s) 256, 304
SspMI CTAG 2 cut(s) 758, 866
SstI GAGCTC 1 cut(s) 411
StyI CCWWGG 2 cut(s) 522, 596
TaaI ACNGT 4 cut(s) 49, 397, 573, 723
TaiI ACGT 1 cut(s) 672
TaqI TCGA 1 cut(s) 299
TasI AATT 6 cut(s) 12, 461, 468, 746, 822, 901
TatI WGTACW 1 cut(s) 843
TfiI GAWTC 2 cut(s) 191, 613
Tru1I TTAA 4 cut(s) 147, 318, 533, 744
Tru9I TTAA 4 cut(s) 147, 318, 533, 744
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 5 cut(s) 65, 269, 618, 657, 896
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 3 cut(s) 690, 813, 841
TspGWI ACGGA 2 cut(s) 107, 418
XbaI TCTAGA 1 cut(s) 865
XspI CTAG 2 cut(s) 758, 866
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.