Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031143.1

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

1584 .. 6334

Gene Structure 4751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031143.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3018 bp

ctgaatgagctggaacagaaaaggagtaaggtagatcaggaatctaaggagaatgtggtgcgtaagtttgtgagaagttctgagtggttgcaagagacagagaatattatcaaggaagctgctgcatggaagtttgaggagagtatacataagaagtattgctgtggtctacccaactataggtcacagtataaagctggaaaacaaatttctgaaagaattgaccggttggttgaactaataaccgaaggcgaaaaattcattaatatgcaggggtctgatgtggtcgggaaaatgatacgcggaagcaagctcatgggggagacggcaaatgctacagttgaagagataaagaagtgtgtatcaggagaagaggttgggacgatacgtgtttatggaatggctggtttaggcaagtcaaatattgtatcgcaagttaatgacctgatattacatgaggaagatgttgatgataacagcacaggaaatggccattttgataaagttctttttgtgactgtaaagaatgagctcggatcaaccaaggcatccgttgaggatctgcagaagcagattgcagataaattacaaattgatcttcacaaggaaaatggaagtagtgcagatgatgcattggcaagttccttggccaagttaagatttctgatcattttggatgatattcagacagaactctcttttgaggcaatcggcattccaaggccaaacaaagagaatcgctgcaaggttataattgtatccagatcacttccggtgtgcagcgacatccacgttgataaaaagtttgagatcaaacctttatctgctgcagaggcacaagaactgtttgagagtgaagctggaattaaattttcaaatctaggggaggatactcgagccattgcaaaggagatgatagatgaatatggttttcccatcacaattatcttgctggcacgaaacttgaagcaattgatgaccaatgattctgatgatgttgataaagtatggaagacagctttgactaagctgaaggattctccagttcgtttagaaagcatgactaagagggcatttactcgtttgaagcatagttatgaaatgttgagtaaagaagctcagcaatgtttcctctattgtgcattgtacccgtctggccatgaaatcgaaaaaagagagttggtggagtattggttttgggagggtttattggataccagaaagagagatggaaggatagaagatatgatacaagcaaaagagatcctcgatgagctcgcagcatcttaccttctggaaacagtcagtcaggaagggggtaaagaatccattaagatgcgcagcttagctaagcatatggcaatccacctgaccaaaacaagccctcagtttctcatcaaagctggagaagagctagaaatgtttcctttgcaaggggagtggcttcaagatgttgagagagcctcgttgatgagaaaccagtttaagtttcttcagggagaacccaaatggcccaagctaaccacattacttctgcagcataaccccataggtttatacttgcatgagaatttctttcgtagtatgcctaatctcaatgttcttgacctttcttacactgatatcacttcccttccacagtcatctttttctaaattgacaaaactgagtgcacttctcttgcatcattgtcgcaacctaaaaaccctaccttctttagaacagtccaagaaactccttgttcttgaccttgctgatactcctgtagcagaattaccagccgggatgaagaaaatgaccaaacttattcgcctaaacctatctcgcaccaatgtgaagatatttccatctaagttagcacctgcattaggacacctggaagaactgttgatgataattaatgactctgaaacatttgttagctatgttgataagcatctttgtccgcctagtttcaggttcggtgtgggtggctcttgtgaagaaaagttacctgaaaacagcatagttttcaagggtaacttcctagtgaatggagaactagtctcactcccagaacacacatccgaactgcatgtcataagcaatgaggatctaccttgcttgcaagttgattgtcatctaaagaacctgaaggtcattaacatttgtgactgcagatgtttggtccatttattcaccactgacatgttggggaatcttccaaaccttgaaaccattttagtcgagaaatgtccaaagattgtgagcttgatagagccagaagaatctgatgacatgattaaatctcgtctgaaacacctaaaggtcattcgtatctctgactgcgaaagtttggtctacttattcaacaatgagatgctgcactacttcccggagctcctagagatctccatcaaacgatgccagatgatagaagttgtaatagggtcaaaagagccaaatgtctaccctgcaattcttccaaagttacaggagttggtattggctgatttgcaagaattaaaatgcatctataatggagaaatgaagtggaactctcgcgaaacaatttggaactgtccagctctaaagatgccaatgataacttctctacctgcagaactgcttcacaggccaaggttaactggcctgccaccctccctgcctgcagtagactcgcgtccggcagcccgcgccttgcacaccccgcctcctcacctgcaacggcgctgctgcacctcacccagatcggattcgtcagctccccaccgtcgcagcacccagatcagcgacgacgtagcagcccactcatccccaatccccgccagcccacacgggcctcagccttgtccagcgttgcaccccaggcctccgcaaccccgcctgacagcatccacgctcgcccgaccttgcctccctgcaaaccatccatcgctgcagaccagaaggaaggaaaagggagaaaagaaagaagaagatggagatggtttcggtggaggagaagaagaggatggagatgaggatggtttcagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

1005

Amino Acids

113.38

Weight (kDa)

6.05

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	752
AarI	CACCTGC	2 cut(s)	1870, 2709
Acc16I	TGCGCA	1 cut(s)	1340
Acc36I	ACCTGC	3 cut(s)	1870, 2605, 2709
AccI	GTMKAC	5 cut(s)	145, 169, 2340, 2448, 2655
AccII	CGCG	4 cut(s)	303, 2544, 2662, 2676
AciI	CCGC	7 cut(s)	303, 1946, 2674, 2690, 2805, 2855, 2863
AclWI	GGATC	4 cut(s)	544, 567, 1258, 2100
AcoI	YGGCCR	3 cut(s)	490, 648, 1156
AcsI	RAATTY	4 cut(s)	207, 257, 869, 1570
AcuI	CTGAAG	3 cut(s)	1052, 1478, 2153
AfaI	GTAC	1 cut(s)	1148
AfiI	CCNNNNNNNGG	3 cut(s)	180, 1433, 1868
AflIII	ACRYGT	2 cut(s)	388, 2187
AgeI	ACCGGT	1 cut(s)	225
AgsI	TTSAA	9 cut(s)	236, 344, 876, 967, 1087, 1448, 2014, 2213, 2350
AhlI	ACTAGT	1 cut(s)	2041
AjnI	CCWGG	2 cut(s)	1875, 2846
AjuI	GAANNNNNNNTTGG	2 cut(s)	2572, 2604
AleI	CACNNNNGTG	1 cut(s)	1832
Alw21I	GWGCWC	4 cut(s)	534, 1278, 1675, 2382
Alw26I	GTCTC	3 cut(s)	89, 317, 2050
Alw44I	GTGCAC	1 cut(s)	1671
AlwI	GGATC	4 cut(s)	544, 567, 1258, 2100
Ama87I	CYCGRG	1 cut(s)	894
AoxI	GGCC	9 cut(s)	490, 648, 722, 1156, 1511, 2615, 2629, 2819, 2849
ApaLI	GTGCAC	1 cut(s)	1671
ApoI	RAATTY	4 cut(s)	207, 257, 869, 1570
ArsI	GACNNNNNNTTYG	4 cut(s)	2061, 2093, 2322, 2354
AseI	ATTAAT	2 cut(s)	264, 1899
AsiGI	ACCGGT	1 cut(s)	225
Asp700I	GAANNNNTTC	2 cut(s)	1422, 2607
AspLEI	GCGC	3 cut(s)	1341, 2678, 2712
AspS9I	GGNCC	3 cut(s)	1512, 2167, 2819
AsuC2I	CCSGG	2 cut(s)	1783, 2375
AsuHPI	GGTGA	3 cut(s)	2170, 2690, 2715
AvaI	CYCGRG	1 cut(s)	894
AvaII	GGWCC	1 cut(s)	2167
BaeGI	GKGCMC	1 cut(s)	1675
BaeI	ACNNNNGTAYC	2 cut(s)	1749, 1782
BalI	TGGCCA	3 cut(s)	492, 650, 1158
BanII	GRGCYC	3 cut(s)	534, 1278, 2382
BarI	GAAGNNNNNNTAC	4 cut(s)	1233, 1265, 1974, 2006
BbsI	GAAGAC	1 cut(s)	1019
Bbv12I	GWGCWC	4 cut(s)	534, 1278, 1675, 2382
BbvCI	CCTCAGC	1 cut(s)	2823
BceAI	ACGGC	2 cut(s)	342, 2723
BcgI	CGANNNNNNTGC	4 cut(s)	1673, 1707, 2640, 2674
BciT130I	CCWGG	2 cut(s)	1877, 2848
BciVI	GTATCC	3 cut(s)	769, 883, 1207
BclI	TGATCA	1 cut(s)	666
BcnI	CCSGG	2 cut(s)	1783, 2375
BcoDI	GTCTC	3 cut(s)	89, 317, 2050
BcuI	ACTAGT	1 cut(s)	2041
BfaI	CTAG	6 cut(s)	881, 1415, 1950, 2027, 2042, 2384
BfoI	RGCGCY	1 cut(s)	2713
BfuAI	ACCTGC	3 cut(s)	1870, 2605, 2709
BfuI	GTATCC	3 cut(s)	769, 883, 1207
BglII	AGATCT	1 cut(s)	2388
BlpI	GCTNAGC	3 cut(s)	1119, 1345, 1350
Bme1390I	CCNGG	4 cut(s)	1783, 1877, 2375, 2848
Bme18I	GGWCC	1 cut(s)	2167
BmeT110I	CYCGRG	1 cut(s)	894
BmgT120I	GGNCC	3 cut(s)	1512, 2167, 2819
BmrFI	CCNGG	4 cut(s)	1783, 1877, 2375, 2848
BoxI	GACNNNNGTC	1 cut(s)	2661
BpiI	GAAGAC	1 cut(s)	1019
BplI	GAGNNNNNCTC	2 cut(s)	1448, 1480
BpmI	CTGGAG	2 cut(s)	1026, 1425
Bpu10I	CCTNAGC	1 cut(s)	2823
Bpu1102I	GCTNAGC	3 cut(s)	1119, 1345, 1350
BpuMI	CCSGG	2 cut(s)	1783, 2375
BsaAI	YACGTR	1 cut(s)	389
BsaBI	GATNNNNATC	3 cut(s)	1935, 2118, 2393
BsaJI	CCNNGG	5 cut(s)	543, 645, 719, 2618, 2846
BsaWI	WCCGGW	2 cut(s)	225, 772
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 1433, 1868
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	3 cut(s)	1043, 1480, 2632
Bse3DI	GCAATG	3 cut(s)	900, 1130, 2092
Bse8I	GATNNNNATC	3 cut(s)	1935, 2118, 2393
BseBI	CCWGG	2 cut(s)	1877, 2848
BseDI	CCNNGG	5 cut(s)	543, 645, 719, 2618, 2846
BseJI	GATNNNNATC	3 cut(s)	1935, 2118, 2393
BseLI	CCNNNNNNNGG	3 cut(s)	180, 1433, 1868
BseMI	GCAATG	3 cut(s)	900, 1130, 2092
BseMII	CTCAG	5 cut(s)	72, 1133, 1400, 1658, 2837
BseNI	ACTGG	3 cut(s)	1043, 1480, 2632
BseRI	GAGGAG	3 cut(s)	152, 2685, 2994
BseSI	GKGCMC	1 cut(s)	1675
BsgI	GTGCAG	4 cut(s)	642, 799, 2348, 2701
Bsh1236I	CGCG	4 cut(s)	303, 2544, 2662, 2676
BshFI	GGCC	9 cut(s)	492, 650, 724, 1158, 1513, 2617, 2631, 2821, 2851
BshTI	ACCGGT	1 cut(s)	225
BsiHKAI	GWGCWC	4 cut(s)	534, 1278, 1675, 2382
BsiHKCI	CYCGRG	1 cut(s)	894
BsiSI	CCGG	5 cut(s)	226, 773, 1782, 2375, 2666
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	3 cut(s)	180, 1433, 1868
BsmAI	GTCTC	3 cut(s)	89, 317, 2050
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	9 cut(s)	492, 650, 724, 1158, 1513, 2617, 2631, 2821, 2851
BsoBI	CYCGRG	1 cut(s)	894
Bsp1286I	GDGCHC	4 cut(s)	534, 1278, 1675, 2382
Bsp1720I	GCTNAGC	3 cut(s)	1119, 1345, 1350
Bsp68I	TCGCGA	1 cut(s)	2544
BspACI	CCGC	7 cut(s)	303, 1946, 2674, 2690, 2805, 2855, 2863
BspANI	GGCC	9 cut(s)	492, 650, 724, 1158, 1513, 2617, 2631, 2821, 2851
BspCNI	CTCAG	5 cut(s)	73, 1132, 1399, 1659, 2836
BspFNI	CGCG	4 cut(s)	303, 2544, 2662, 2676
BspMAI	CTGCAG	7 cut(s)	567, 832, 1539, 2159, 2602, 2653, 2922
BspMI	ACCTGC	3 cut(s)	1870, 2605, 2709
BspPI	GGATC	4 cut(s)	544, 567, 1258, 2100
BspQI	GCTCTTC	1 cut(s)	1404
BsrDI	GCAATG	3 cut(s)	900, 1130, 2092
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	1043, 1480, 2632
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	5 cut(s)	543, 645, 719, 2618, 2846
BssNAI	GTATAC	1 cut(s)	146
BssT1I	CCWWGG	4 cut(s)	543, 645, 719, 2618
Bst1107I	GTATAC	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	1877, 2848
Bst6I	CTCTTC	4 cut(s)	339, 366, 1404, 2982
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	9 cut(s)	311, 954, 1278, 2105, 2633, 2649, 2674, 2809, 2883
BstENI	CCTNNNNNAGG	2 cut(s)	1431, 1866
BstFNI	CGCG	4 cut(s)	303, 2544, 2662, 2676
BstH2I	RGCGCY	1 cut(s)	2713
BstHHI	GCGC	3 cut(s)	1341, 2678, 2712
BstMAI	GTCTC	3 cut(s)	89, 317, 2050
BstMWI	GCNNNNNNNGC	6 cut(s)	629, 833, 2614, 2675, 2689, 2848
BstNI	CCWGG	2 cut(s)	1877, 2848
BstNSI	RCATGY	2 cut(s)	2078, 2191
BstPAI	GACNNNNGTC	1 cut(s)	2661
BstSCI	CCNGG	4 cut(s)	1781, 1875, 2373, 2846
BstSLI	GKGCMC	1 cut(s)	1675
BstUI	CGCG	4 cut(s)	303, 2544, 2662, 2676
BstV2I	GAAGAC	1 cut(s)	1019
BstX2I	RGATCY	4 cut(s)	559, 1263, 2092, 2388
BstYI	RGATCY	4 cut(s)	559, 1263, 2092, 2388
BstZ17I	GTATAC	1 cut(s)	146
BsuI	GTATCC	3 cut(s)	769, 883, 1207
BsuRI	GGCC	9 cut(s)	492, 650, 724, 1158, 1513, 2617, 2631, 2821, 2851
BtgZI	GCGATG	1 cut(s)	2898
BtsIMutI	CAGTG	2 cut(s)	1617, 2181
BtuMI	TCGCGA	1 cut(s)	2544
BveI	ACCTGC	3 cut(s)	1870, 2605, 2709
Cac8I	GCNNGC	9 cut(s)	311, 954, 1278, 2105, 2633, 2649, 2674, 2809, 2883
CfoI	GCGC	3 cut(s)	1341, 2678, 2712
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	3 cut(s)	1512, 2167, 2819
CseI	GACGC	1 cut(s)	2651
Csp6I	GTAC	1 cut(s)	1147
CspAI	ACCGGT	1 cut(s)	225
CspCI	CAANNNNNGTGG	2 cut(s)	1421, 1456
CviAII	CATG	9 cut(s)	126, 316, 455, 1060, 1160, 1565, 2075, 2188, 2278
CviQI	GTAC	1 cut(s)	1147
EaeI	YGGCCR	3 cut(s)	490, 648, 1156
Eam1104I	CTCTTC	4 cut(s)	339, 366, 1404, 2982
EarI	CTCTTC	4 cut(s)	339, 366, 1404, 2982
EciI	GGCGGA	1 cut(s)	1935
Ecl136II	GAGCTC	3 cut(s)	532, 1276, 2380
Eco130I	CCWWGG	4 cut(s)	543, 645, 719, 2618
Eco147I	AGGCCT	1 cut(s)	2851
Eco24I	GRGCYC	3 cut(s)	534, 1278, 2382
Eco32I	GATATC	1 cut(s)	1624
Eco47I	GGWCC	1 cut(s)	2167
Eco53kI	GAGCTC	3 cut(s)	532, 1276, 2380
Eco57I	CTGAAG	3 cut(s)	1052, 1478, 2153
Eco88I	CYCGRG	1 cut(s)	894
EcoICRI	GAGCTC	3 cut(s)	532, 1276, 2380
EcoNI	CCTNNNNNAGG	2 cut(s)	1431, 1866
EcoRII	CCWGG	2 cut(s)	1875, 2846
EcoRV	GATATC	1 cut(s)	1624
EcoT14I	CCWWGG	4 cut(s)	543, 645, 719, 2618
EcoT22I	ATGCAT	2 cut(s)	634, 2513
EcoT38I	GRGCYC	3 cut(s)	534, 1278, 2382
ErhI	CCWWGG	4 cut(s)	543, 645, 719, 2618
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	9 cut(s)	129, 319, 458, 1063, 1163, 1568, 2078, 2191, 2281
FalI	AAGNNNNNCTT	2 cut(s)	2006, 2038
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	9 cut(s)	125, 315, 454, 1059, 1159, 1564, 2074, 2187, 2277
FauI	CCCGC	4 cut(s)	2681, 2697, 2812, 2870
FauNDI	CATATG	1 cut(s)	1356
FbaI	TGATCA	1 cut(s)	666
FblI	GTMKAC	5 cut(s)	145, 169, 2340, 2448, 2655
FokI	GGATG	9 cut(s)	535, 689, 773, 1798, 2050, 2779, 2860, 2895, 3005
FriOI	GRGCYC	3 cut(s)	534, 1278, 2382
FspBI	CTAG	6 cut(s)	881, 1415, 1950, 2027, 2042, 2384
FspI	TGCGCA	1 cut(s)	1340
GlaI	GCGC	3 cut(s)	1340, 2677, 2711
GsuI	CTGGAG	2 cut(s)	1026, 1425
HaeII	RGCGCY	1 cut(s)	2713
HaeIII	GGCC	9 cut(s)	492, 650, 724, 1158, 1513, 2617, 2631, 2821, 2851
HapII	CCGG	5 cut(s)	226, 773, 1782, 2375, 2666
HgaI	GACGC	1 cut(s)	2651
HhaI	GCGC	3 cut(s)	1341, 2678, 2712
Hin1II	CATG	9 cut(s)	129, 319, 458, 1063, 1163, 1568, 2078, 2191, 2281
Hin6I	GCGC	3 cut(s)	1339, 2676, 2710
HinP1I	GCGC	3 cut(s)	1339, 2676, 2710
HincII	GTYRAC	1 cut(s)	2625
HindII	GTYRAC	1 cut(s)	2625
HpaI	GTTAAC	1 cut(s)	2625
HpaII	CCGG	5 cut(s)	226, 773, 1782, 2375, 2666
HphI	GGTGA	3 cut(s)	2170, 2690, 2715
Hpy166II	GTNNAC	7 cut(s)	146, 170, 1673, 2341, 2449, 2625, 2656
Hpy8I	GTNNAC	7 cut(s)	146, 170, 1673, 2341, 2449, 2625, 2656
Hpy99I	CGWCG	3 cut(s)	2757, 2777, 2780
HpyCH4IV	ACGT	3 cut(s)	388, 792, 2778
HpyF10VI	GCNNNNNNNGC	6 cut(s)	629, 833, 2614, 2675, 2689, 2848
HpySE526I	ACGT	3 cut(s)	388, 792, 2778
Hsp92II	CATG	9 cut(s)	129, 319, 458, 1063, 1163, 1568, 2078, 2191, 2281
HspAI	GCGC	3 cut(s)	1339, 2676, 2710
Ksp22I	TGATCA	1 cut(s)	666
KspAI	GTTAAC	1 cut(s)	2625
LguI	GCTCTTC	1 cut(s)	1404
LmnI	GCTCC	3 cut(s)	2377, 2385, 2749
MaeI	CTAG	6 cut(s)	881, 1415, 1950, 2027, 2042, 2384
MaeII	ACGT	3 cut(s)	388, 792, 2778
MaeIII	GTNAC	6 cut(s)	183, 514, 1989, 2018, 2150, 2469
MfeI	CAATTG	1 cut(s)	971
MflI	RGATCY	4 cut(s)	559, 1263, 2092, 2388
MhlI	GDGCHC	4 cut(s)	534, 1278, 1675, 2382
MlsI	TGGCCA	3 cut(s)	492, 650, 1158
MluNI	TGGCCA	3 cut(s)	492, 650, 1158
MlyI	GAGTC	2 cut(s)	1898, 2651
Mox20I	TGGCCA	3 cut(s)	492, 650, 1158
Mph1103I	ATGCAT	2 cut(s)	634, 2513
MroXI	GAANNNNTTC	2 cut(s)	1422, 2607
MscI	TGGCCA	3 cut(s)	492, 650, 1158
MslI	CAYNNNNRTG	5 cut(s)	266, 1095, 1334, 1832, 2186
Msp20I	TGGCCA	3 cut(s)	492, 650, 1158
MspI	CCGG	5 cut(s)	226, 773, 1782, 2375, 2666
MspR9I	CCNGG	4 cut(s)	1783, 1877, 2375, 2848
MunI	CAATTG	1 cut(s)	971
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	1877, 2848
MvnI	CGCG	4 cut(s)	303, 2544, 2662, 2676
MwoI	GCNNNNNNNGC	6 cut(s)	629, 833, 2614, 2675, 2689, 2848
NciI	CCSGG	2 cut(s)	1783, 2375
NdeI	CATATG	1 cut(s)	1356
NlaIII	CATG	9 cut(s)	129, 319, 458, 1063, 1163, 1568, 2078, 2191, 2281
NmuCI	GTSAC	3 cut(s)	183, 514, 2150
NruI	TCGCGA	1 cut(s)	2544
NsbI	TGCGCA	1 cut(s)	1340
NsiI	ATGCAT	2 cut(s)	634, 2513
NspI	RCATGY	2 cut(s)	2078, 2191
OliI	CACNNNNGTG	1 cut(s)	1832
PaeR7I	CTCGAG	1 cut(s)	894
PaqCI	CACCTGC	2 cut(s)	1870, 2709
PceI	AGGCCT	1 cut(s)	2851
PciI	ACATGT	1 cut(s)	2187
PciSI	GCTCTTC	1 cut(s)	1404
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	2 cut(s)	1422, 2607
PfeI	GAWTC	8 cut(s)	41, 736, 986, 1037, 1325, 2197, 2267, 2735
PfoI	TCCNGGA	1 cut(s)	2373
PinAI	ACCGGT	1 cut(s)	225
PleI	GAGTC	2 cut(s)	1898, 2651
PpsI	GAGTC	2 cut(s)	1898, 2651
Ppu21I	YACGTR	1 cut(s)	389
PscI	ACATGT	1 cut(s)	2187
PshAI	GACNNNNGTC	1 cut(s)	2661
PshBI	ATTAAT	2 cut(s)	264, 1899
PsiI	TTATAA	1 cut(s)	752
Psp124BI	GAGCTC	3 cut(s)	534, 1278, 2382
Psp6I	CCWGG	2 cut(s)	1875, 2846
PspGI	CCWGG	2 cut(s)	1875, 2846
PspPI	GGNCC	3 cut(s)	1512, 2167, 2819
PspXI	VCTCGAGB	1 cut(s)	894
PstI	CTGCAG	7 cut(s)	567, 832, 1539, 2159, 2602, 2653, 2922
PsuI	RGATCY	4 cut(s)	559, 1263, 2092, 2388
RruI	TCGCGA	1 cut(s)	2544
RsaI	GTAC	1 cut(s)	1148
RsaNI	GTAC	1 cut(s)	1147
RseI	CAYNNNNRTG	5 cut(s)	266, 1095, 1334, 1832, 2186
SacI	GAGCTC	3 cut(s)	534, 1278, 2382
SapI	GCTCTTC	1 cut(s)	1404
Sau96I	GGNCC	3 cut(s)	1512, 2167, 2819
SchI	GAGTC	2 cut(s)	1898, 2651
ScrFI	CCNGG	4 cut(s)	1783, 1877, 2375, 2848
SduI	GDGCHC	4 cut(s)	534, 1278, 1675, 2382
Sfr274I	CTCGAG	1 cut(s)	894
SinI	GGWCC	1 cut(s)	2167
SlaI	CTCGAG	1 cut(s)	894
SmiMI	CAYNNNNRTG	5 cut(s)	266, 1095, 1334, 1832, 2186
SmlI	CTYRAG	1 cut(s)	894
SmoI	CTYRAG	1 cut(s)	894
SpeI	ACTAGT	1 cut(s)	2041
SseBI	AGGCCT	1 cut(s)	2851
SsiI	CCGC	7 cut(s)	303, 1946, 2674, 2690, 2805, 2855, 2863
SspI	AATATT	2 cut(s)	106, 424
SspMI	CTAG	6 cut(s)	881, 1415, 1950, 2027, 2042, 2384
SstI	GAGCTC	3 cut(s)	534, 1278, 2382
StuI	AGGCCT	1 cut(s)	2851
StyD4I	CCNGG	4 cut(s)	1781, 1875, 2373, 2846
StyI	CCWWGG	4 cut(s)	543, 645, 719, 2618
TaiI	ACGT	3 cut(s)	391, 795, 2781
TaqI	TCGA	4 cut(s)	895, 1167, 1269, 2226
TfiI	GAWTC	8 cut(s)	41, 736, 986, 1037, 1325, 2197, 2267, 2735
TscAI	CASTG	2 cut(s)	1624, 2188
TseFI	GTSAC	3 cut(s)	183, 514, 2150
Tsp45I	GTSAC	3 cut(s)	183, 514, 2150
TspDTI	ATGAA	6 cut(s)	250, 936, 1113, 1176, 1802, 2543
TspGWI	ACGGA	1 cut(s)	541
TspRI	CASTG	2 cut(s)	1624, 2188
VneI	GTGCAC	1 cut(s)	1671
VpaK11BI	GGWCC	1 cut(s)	2167
VspI	ATTAAT	2 cut(s)	264, 1899
XagI	CCTNNNNNAGG	2 cut(s)	1431, 1866
XapI	RAATTY	4 cut(s)	207, 257, 869, 1570
XceI	RCATGY	2 cut(s)	2078, 2191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2188
XhoI	CTCGAG	1 cut(s)	894
XmiI	GTMKAC	5 cut(s)	145, 169, 2340, 2448, 2655
XmnI	GAANNNNTTC	2 cut(s)	1422, 2607
XspI	CTAG	6 cut(s)	881, 1415, 1950, 2027, 2042, 2384
Zsp2I	ATGCAT	2 cut(s)	634, 2513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.