Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

34897310 .. 34898913

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGATTCAAATGCAGAAACCGTTGCATGTTGTTACCGGCATCGTTGGTTTTCTAATCGTAGTGGTAACTCTGCTATCACCATGTATAAGTGAACCCCTCTCCAAGCGATGCAGCATTTTCAGGAAACGCAAAGAACATCTCGAGGCATTGAAAACTGAAGTGAACATCTTCGAACAACTGAGGGGTGAAGTAGAACAACAGTTTAAGCAGAAGGTGGTGAGAAAGTCTTCAAGAAAATGTGACTGGTTTCAAAAAGCAGATGAATTTATCAATGTCTTTGATCCGGAGCTTGAAGCAGTTAGAATAAGCAAGAATTGCTCTGGTGTACCATACTATAGGTCACAATATAAAGCAGGAAAAGATACTGCAGCAGCAAGAGTTAAACAGAAGTTGACTCTTGAGCTAATTGGGATTCCAGTGCCAACGAGGGAAAATGGCTGCAAGGGTATAATAGTATCCAGATCACTTCCCGTGTTCAGTGATATCAAAATTGAAAAGAAGGTTGAGATCAAACCTCTTTCAGATACAGCGGCACGAGAGTTGTTTGAGAGGGAAGCTGGTGTTAGATTCTCAGACTTCAGCGATGATACTCAAACTCTGGCAGAGAAGATGGTAGATGACTGTGATGGTTTGCCCTTGGCTATTGGCTTTCTCGCTCAGACCTTGAAAGAATTAAAGATTGATGGAGCTGGCAGTGTTGATGCTGCATGGAATGCATCCCTTTTGAAGTTACGGAGTTCTCACTTGGAAAGCATGAATGAAAGGGCATTTGCTTGTCTGAAGTACAACTATGATATGTTGAAGAAAGATGCTCAGCAATGTCTCTTGTATTGTGCCTTATGCCCTTGTGGTCACTACATTGGTAAAAAAGAGCTAGTGGAGTATTGGTTTTGGGAGGGTTTATTGGATAGAAACAAGAGAGATGGTCGGATAGAAGATGTGGTACAAGCAAGAGAGATACTCGATGAGCTTGTAGGAGCTTACTGTTTGGAAACAGTTAGTCAAGAAGATGGCAAGGAATGCATAAAGATGTGCAGATTGGTTGAGCATATGGCAGTCCAGATTACCAAATTAGCAAGTCCTCAGTTTTTCACCAAAGCTGGCATCAGAAAGAAAAGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

374

Amino Acids

42.43

Weight (kDa)

8.53

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	3 cut(s)	177, 562, 800
AfaI	GTAC	3 cut(s)	327, 785, 945
AgsI	TTSAA	9 cut(s)	8, 151, 231, 251, 293, 494, 667, 727, 802
AluBI	AGCT	8 cut(s)	289, 403, 557, 689, 874, 970, 980, 1100
AluI	AGCT	8 cut(s)	289, 403, 557, 689, 874, 970, 980, 1100
Alw26I	GTCTC	1 cut(s)	827
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	283
ApeKI	GCWGC	5 cut(s)	111, 368, 371, 438, 704
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	2 cut(s)	167, 226
AsuHPI	GGTGA	4 cut(s)	69, 197, 229, 1084
AsuII	TTCGAA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	927, 959
BauI	CACGAG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	5 cut(s)	123, 380, 383, 425, 691
BccI	CCATC	5 cut(s)	604, 620, 677, 917, 1004
BciVI	GTATCC	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	827
BfaI	CTAG	2 cut(s)	875, 1123
BfmI	CTRYAG	2 cut(s)	334, 366
BfuI	GTATCC	1 cut(s)	466
BisI	GCNGC	6 cut(s)	112, 369, 372, 439, 531, 705
BlpI	GCTNAGC	1 cut(s)	813
BlsI	GCNGC	6 cut(s)	113, 370, 373, 440, 532, 706
BmeT110I	CYCGRG	1 cut(s)	140
BmsI	GCATC	6 cut(s)	48, 98, 691, 725, 799, 1113
BpiI	GAAGAC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	945, 977
Bpu1102I	GCTNAGC	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	636
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	248, 416
Bse3DI	GCAATG	1 cut(s)	824
BseAI	TCCGGA	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	716
BseMI	GCAATG	1 cut(s)	824
BseMII	CTCAG	5 cut(s)	170, 585, 671, 827, 1097
BseNI	ACTGG	2 cut(s)	248, 416
BseXI	GCAGC	5 cut(s)	123, 380, 383, 425, 691
BsgI	GTGCAG	1 cut(s)	1054
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	36, 284
BsmAI	GTCTC	1 cut(s)	827
BsmI	GAATGC	2 cut(s)	718, 1025
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	280, 461, 507
Bsp1720I	GCTNAGC	1 cut(s)	813
BspACI	CCGC	1 cut(s)	530
BspCNI	CTCAG	5 cut(s)	171, 584, 670, 826, 1096
BspEI	TCCGGA	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	824
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	248, 416
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	3 cut(s)	280, 461, 507
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	1 cut(s)	636
Bst2BI	CACGAG	1 cut(s)	534
Bst4CI	ACNGT	5 cut(s)	21, 201, 623, 986, 997
BstAPI	GCANNNNNTGC	3 cut(s)	315, 713, 1020
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	691, 1102
BstDEI	CTNAG	5 cut(s)	179, 571, 657, 813, 1083
BstF5I	GGATG	1 cut(s)	716
BstKTI	GATC	3 cut(s)	283, 464, 510
BstMAI	GTCTC	1 cut(s)	827
BstMBI	GATC	3 cut(s)	280, 461, 507
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 713, 1020
BstNSI	RCATGY	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	334, 366
BstV1I	GCAGC	5 cut(s)	123, 380, 383, 425, 691
BstV2I	GAAGAC	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	466
BtgZI	GCGATG	2 cut(s)	121, 597
BtsCI	GGATG	1 cut(s)	716
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	3 cut(s)	423, 484, 700
Cac8I	GCNNGC	2 cut(s)	691, 1102
Cfr10I	RCCGGY	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	326, 784, 944
CviAII	CATG	4 cut(s)	26, 81, 708, 754
CviQI	GTAC	3 cut(s)	326, 784, 944
DdeI	CTNAG	5 cut(s)	179, 571, 657, 813, 1083
DpnI	GATC	3 cut(s)	282, 463, 509
DpnII	GATC	3 cut(s)	280, 461, 507
Eco130I	CCWWGG	1 cut(s)	636
Eco32I	GATATC	1 cut(s)	484
Eco57I	CTGAAG	3 cut(s)	177, 562, 800
Eco88I	CYCGRG	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	636
EcoT22I	ATGCAT	2 cut(s)	718, 1025
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	4 cut(s)	29, 84, 711, 757
FatI	CATG	4 cut(s)	25, 80, 707, 753
FauNDI	CATATG	1 cut(s)	1050
Fnu4HI	GCNGC	6 cut(s)	112, 369, 372, 439, 531, 705
FokI	GGATG	1 cut(s)	703
Fsp4HI	GCNGC	6 cut(s)	112, 369, 372, 439, 531, 705
FspBI	CTAG	2 cut(s)	875, 1123
GluI	GCNGC	6 cut(s)	112, 369, 372, 439, 531, 705
HapII	CCGG	2 cut(s)	36, 284
Hin1II	CATG	4 cut(s)	29, 84, 711, 757
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	4 cut(s)	4, 394, 412, 567
HpaII	CCGG	2 cut(s)	36, 284
HphI	GGTGA	4 cut(s)	69, 197, 229, 1084
Hpy166II	GTNNAC	4 cut(s)	92, 163, 326, 393
Hpy188I	TCNGA	6 cut(s)	523, 574, 660, 780, 930, 1109
Hpy188III	TCNNGA	8 cut(s)	121, 140, 231, 284, 398, 459, 1004, 1060
Hpy8I	GTNNAC	4 cut(s)	92, 163, 326, 393
HpyAV	CCTTC	2 cut(s)	205, 493
HpyCH4III	ACNGT	5 cut(s)	21, 201, 623, 986, 997
HpyCH4V	TGCA	9 cut(s)	13, 25, 111, 368, 441, 707, 716, 1023, 1035
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 713, 1020
HpyF3I	CTNAG	5 cut(s)	179, 571, 657, 813, 1083
Hsp92II	CATG	4 cut(s)	29, 84, 711, 757
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	280, 461, 507
LmnI	GCTCC	3 cut(s)	286, 686, 977
Lsp1109I	GCAGC	5 cut(s)	123, 380, 383, 425, 691
LweI	GCATC	6 cut(s)	48, 98, 691, 725, 799, 1113
MaeI	CTAG	2 cut(s)	875, 1123
MaeIII	GTNAC	6 cut(s)	31, 64, 239, 339, 729, 851
MalI	GATC	3 cut(s)	282, 463, 509
MboI	GATC	3 cut(s)	280, 461, 507
MboII	GAAGA	6 cut(s)	160, 219, 619, 814, 947, 1019
MluCI	AATT	6 cut(s)	263, 313, 405, 489, 671, 1070
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	908
MnlI	CCTC	8 cut(s)	107, 136, 174, 420, 525, 543, 889, 1092
Mph1103I	ATGCAT	2 cut(s)	718, 1025
MroI	TCCGGA	1 cut(s)	283
MroXI	GAANNNNTTC	2 cut(s)	167, 226
MseI	TTAA	3 cut(s)	204, 381, 674
MslI	CAYNNNNRTG	1 cut(s)	1028
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	36, 284
Mva1269I	GAATGC	2 cut(s)	718, 1025
MwoI	GCNNNNNNNGC	3 cut(s)	315, 713, 1020
NdeI	CATATG	1 cut(s)	1050
NdeII	GATC	3 cut(s)	280, 461, 507
NlaIII	CATG	4 cut(s)	29, 84, 711, 757
NmuCI	GTSAC	3 cut(s)	239, 339, 851
NsiI	ATGCAT	2 cut(s)	718, 1025
NspI	RCATGY	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	140
PctI	GAATGC	2 cut(s)	718, 1025
PdmI	GAANNNNTTC	2 cut(s)	167, 226
PfeI	GAWTC	3 cut(s)	4, 412, 567
PkrI	GCNGC	6 cut(s)	113, 370, 373, 440, 532, 706
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	3 cut(s)	327, 785, 945
RsaNI	GTAC	3 cut(s)	326, 784, 944
RseI	CAYNNNNRTG	1 cut(s)	1028
SaqAI	TTAA	3 cut(s)	204, 381, 674
SatI	GCNGC	6 cut(s)	112, 369, 372, 439, 531, 705
Sau3AI	GATC	3 cut(s)	280, 461, 507
SchI	GAGTC	1 cut(s)	388
SfaNI	GCATC	6 cut(s)	48, 98, 691, 725, 799, 1113
SfcI	CTRYAG	2 cut(s)	334, 366
Sfr274I	CTCGAG	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	1028
SmlI	CTYRAG	2 cut(s)	140, 398
SmoI	CTYRAG	2 cut(s)	140, 398
Sse9I	AATT	6 cut(s)	263, 313, 405, 489, 671, 1070
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	2 cut(s)	875, 1123
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	5 cut(s)	21, 201, 623, 986, 997
TaqI	TCGA	3 cut(s)	141, 171, 963
TasI	AATT	6 cut(s)	263, 313, 405, 489, 671, 1070
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	3 cut(s)	4, 412, 567
Tru1I	TTAA	3 cut(s)	204, 381, 674
Tru9I	TTAA	3 cut(s)	204, 381, 674
TscAI	CASTG	3 cut(s)	423, 484, 700
TseFI	GTSAC	3 cut(s)	239, 339, 851
TseI	GCWGC	5 cut(s)	111, 368, 371, 438, 704
Tsp45I	GTSAC	3 cut(s)	239, 339, 851
TspDTI	ATGAA	3 cut(s)	276, 770, 774
TspGWI	ACGGA	1 cut(s)	748
TspRI	CASTG	3 cut(s)	423, 484, 700
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	140
XmnI	GAANNNNTTC	2 cut(s)	167, 226
XspI	CTAG	2 cut(s)	875, 1123
Zsp2I	ATGCAT	2 cut(s)	718, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.