Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8352783.1

Orthogroup ID

OG0002553

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 565

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8352783.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggttaaagagattacggagtatgtaacaggagaggaggtcgggactatacatgtttatgaaatggctggttccggcaagacagcagttgtgtcggaaaataaaatggcagagaaattacaaattgatctgaataaagccactgggagtagagcagattcattggcaagtgcattgaaggagttaagatttttgatcattttggatgatatgtggaagaagctgtctcttgagctaatttggattccagtgccaacaagggaaaatggctgcaaggttataatagtatccagatcacttccagtgttcaatgacatcaaaattgacaagaagtttgagatcaaacctctttcagatacagcggcacgagaattgtttgagagggaagctggcattagattctcagacttgagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

138

Amino Acids

15.57

Weight (kDa)

5.93

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002553)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G038400_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G038500_v2.0.a1 Prupe.4G109000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0006451 RchiOBHm_Chr5g0006641
rosa_laevigata	RLG00000010123 RLG00000031358 RLG00000031359 RLG00000031409 RLG00000031412 RLG00000031414 RLG00000031415 RLG00000031416
rosa_multiflora	Rmu_co8352783.1_g000001 Rmu_sc0001972.1_g000012 Rmu_sc0001972.1_g000020 Rmu_sc0001972.1_g000021 Rmu_sc0002972.1_g000002 Rmu_sc0008991.1_g000009 Rmu_sc0031143.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069360
rosa_rugosa	Rorug04G0423500 Rorug04G0423600 Rorug04G0423700
rosa_samantha	Rh5AG051300 Rh5AG264900 Rh5AG265100 Rh5BG050100 Rh5BG050300 Rh5BG050400 Rh5CG058400 Rh5CG058900 Rh5CG079700 Rh5DG049500
rosa_wichuraiana	Rw5G005070 Rw5G005310 Rw5G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AciI	CCGC	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	178, 310
AluBI	AGCT	3 cut(s)	223, 235, 389
AluI	AGCT	3 cut(s)	223, 235, 389
Alw26I	GTCTC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
BauI	CACGAG	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciVI	GTATCC	1 cut(s)	298
BclI	TGATCA	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	2 cut(s)	271, 363
BlsI	GCNGC	2 cut(s)	272, 364
BmiI	GGNNCC	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse1I	ACTGG	3 cut(s)	148, 248, 302
BseGI	GGATG	1 cut(s)	211
BseNI	ACTGG	3 cut(s)	148, 248, 302
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	127, 195, 293, 339
BspACI	CCGC	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	73
BsrI	ACTGG	3 cut(s)	148, 248, 302
BssMI	GATC	4 cut(s)	127, 195, 293, 339
BssSI	CACGAG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	130, 198, 296, 342
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	4 cut(s)	127, 195, 293, 339
BstNSI	RCATGY	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	3 cut(s)	141, 255, 309
Cac8I	GCNNGC	1 cut(s)	391
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	6 cut(s)	68, 140, 223, 235, 270, 389
CviKI_1	RGCY	6 cut(s)	68, 140, 223, 235, 270, 389
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	4 cut(s)	129, 197, 295, 341
DpnII	GATC	4 cut(s)	127, 195, 293, 339
FaeI	CATG	1 cut(s)	56
FaiI	YATR	6 cut(s)	24, 50, 54, 60, 212, 281
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	271, 363
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	271, 363
GluI	GCNGC	2 cut(s)	271, 363
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	3 cut(s)	158, 244, 399
HpaII	CCGG	1 cut(s)	75
Hpy188I	TCNGA	4 cut(s)	97, 132, 355, 406
Hpy188III	TCNNGA	3 cut(s)	43, 230, 291
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	173, 273
HpyF3I	CTNAG	1 cut(s)	403
Hsp92II	CATG	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	127, 195, 293, 339
LpnPI	CCDG	8 cut(s)	15, 54, 88, 129, 261, 304, 315, 375
Lsp1109I	GCAGC	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	4 cut(s)	129, 197, 295, 341
MboI	GATC	4 cut(s)	127, 195, 293, 339
MboII	GAAGA	1 cut(s)	229
MluCI	AATT	5 cut(s)	116, 123, 237, 321, 371
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	28, 31, 357, 375, 405
MseI	TTAA	2 cut(s)	6, 185
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	75
NdeII	GATC	4 cut(s)	127, 195, 293, 339
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	158, 244, 399
PkrI	GCNGC	2 cut(s)	272, 364
PscI	ACATGT	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	6, 185
SatI	GCNGC	2 cut(s)	271, 363
Sau3AI	GATC	4 cut(s)	127, 195, 293, 339
SetI	ASST	6 cut(s)	42, 225, 237, 279, 349, 391
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	2 cut(s)	230, 409
SmoI	CTYRAG	2 cut(s)	230, 409
Sse9I	AATT	5 cut(s)	116, 123, 237, 321, 371
SsiI	CCGC	1 cut(s)	362
TasI	AATT	5 cut(s)	116, 123, 237, 321, 371
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	3 cut(s)	158, 244, 399
Tru1I	TTAA	2 cut(s)	6, 185
Tru9I	TTAA	2 cut(s)	6, 185
TscAI	CASTG	3 cut(s)	148, 255, 309
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	2 cut(s)	75, 150
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	3 cut(s)	148, 255, 309
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.